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Search of human proteins with 239757619
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens] 237 1e-63
gi|239752110 PREDICTED: hypothetical protein XP_002348113 [Homo ... 237 1e-63
gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo ... 204 2e-53
gi|239743812 PREDICTED: similar to hCG1644292 [Homo sapiens] 204 2e-53
gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens] 198 9e-52
gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens] 186 3e-48
gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens] 185 8e-48
gi|222537750 ankyrin repeat domain 30B [Homo sapiens] 170 3e-43
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 144 1e-35
gi|221316624 dystonin isoform 4 [Homo sapiens] 31 0.24
gi|221316622 dystonin isoform 3 [Homo sapiens] 31 0.24
gi|221316618 dystonin isoform 2 [Homo sapiens] 31 0.24
gi|34577047 dystonin isoform 1 [Homo sapiens] 31 0.24
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 31 0.24
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 31 0.24
gi|239756223 PREDICTED: ankyrin repeat domain-containing protein... 30 0.31
gi|169209369 PREDICTED: similar to Putative ankyrin repeat domai... 30 0.31
gi|239745040 PREDICTED: ankyrin repeat domain-containing protein... 30 0.31
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 30 0.31
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens] 30 0.31
gi|39812378 RAN binding protein 9 [Homo sapiens] 29 0.70
gi|148276977 melanoma antigen family A, 1 [Homo sapiens] 28 2.0
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 28 2.0
gi|38176300 nestin [Homo sapiens] 27 2.6
gi|5803121 protein disulfide isomerase A5 [Homo sapiens] 27 2.6
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 27 3.5
gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 27 3.5
>gi|239757619 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 118
Score = 237 bits (605), Expect = 1e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATKASTNGKMLE 118
QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATKASTNGKMLE
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATKASTNGKMLE 118
>gi|239752110 PREDICTED: hypothetical protein XP_002348113 [Homo
sapiens]
Length = 118
Score = 237 bits (605), Expect = 1e-63
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATKASTNGKMLE 118
QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATKASTNGKMLE
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATKASTNGKMLE 118
>gi|239743843 PREDICTED: hypothetical protein XP_002342968 [Homo
sapiens]
Length = 139
Score = 204 bits (518), Expect = 2e-53
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
>gi|239743812 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 139
Score = 204 bits (518), Expect = 2e-53
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
>gi|239758143 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 115
Score = 198 bits (503), Expect = 9e-52
Identities = 98/105 (93%), Positives = 100/105 (95%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVERT EAAPLVEGTSDEVQCLGKTISGK E+SA ETPRKITRPVKETSEKFAWP
Sbjct: 1 MAESLVERTQHEAAPLVEGTSDEVQCLGKTISGKIEESAGETPRKITRPVKETSEKFAWP 60
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK 105
QERPTKTTWEEKETSVKTECVAGVTSNK EVLEEGT+KMITCPTK
Sbjct: 61 QERPTKTTWEEKETSVKTECVAGVTSNKTEVLEEGTSKMITCPTK 105
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 20 TSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEK 56
TS + +C+ S KTE T + IT P K+ +K
Sbjct: 74 TSVKTECVAGVTSNKTEVLEEGTSKMITCPTKKQLQK 110
>gi|239749791 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 186 bits (473), Expect = 3e-48
Identities = 94/120 (78%), Positives = 105/120 (87%), Gaps = 2/120 (1%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVE+ PDEAAPLVEGT+D++QCLGK SGK EQSA ETP+KI R KETSEKFAWP
Sbjct: 552 MAESLVEKPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETPKKIMRTAKETSEKFAWP 611
Query: 61 -QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK-TATKASTNGKMLE 118
+ERP K TWEEKETSVKTECVAGV NK EVLE+GT++M+TCPTK T+TKASTNGKMLE
Sbjct: 612 AKERPRKITWEEKETSVKTECVAGVIPNKTEVLEKGTSEMLTCPTKETSTKASTNGKMLE 671
>gi|239755296 PREDICTED: similar to hCG1644292 [Homo sapiens]
Length = 671
Score = 185 bits (469), Expect = 8e-48
Identities = 93/120 (77%), Positives = 105/120 (87%), Gaps = 2/120 (1%)
Query: 1 MAESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP 60
MAESLVE+ PDEAAPLVEGT+D++QCLGK SGK EQSA ETP+KI R KETS+KFAWP
Sbjct: 552 MAESLVEKPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETPKKIMRTAKETSKKFAWP 611
Query: 61 -QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK-TATKASTNGKMLE 118
+ERP K TWEEKETSVKTECVAGV NK EVLE+GT++M+TCPTK T+TKASTNGKMLE
Sbjct: 612 AKERPRKITWEEKETSVKTECVAGVIPNKTEVLEKGTSEMLTCPTKETSTKASTNGKMLE 671
>gi|222537750 ankyrin repeat domain 30B [Homo sapiens]
Length = 1392
Score = 170 bits (430), Expect = 3e-43
Identities = 87/114 (76%), Positives = 96/114 (84%), Gaps = 2/114 (1%)
Query: 2 AESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWP- 60
AESL+E+TPDEAA LVEGTS ++QCLGK SGK EQS ETPRKI RP KETSEKF+WP
Sbjct: 295 AESLLEKTPDEAARLVEGTSAKIQCLGKATSGKFEQSTEETPRKILRPTKETSEKFSWPA 354
Query: 61 QERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTK-TATKASTN 113
+ER K TWEEKETSVKTECVAGVT NK EVLE+GT+ MI CPTK T+TKASTN
Sbjct: 355 KERSRKITWEEKETSVKTECVAGVTPNKTEVLEKGTSNMIACPTKETSTKASTN 408
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 144 bits (363), Expect = 1e-35
Identities = 81/148 (54%), Positives = 92/148 (62%), Gaps = 36/148 (24%)
Query: 2 AESLVERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWPQ 61
AESLVE+TPDEAA LVEGTSD++QCL K SGK EQSA ETPR+IT P KETSEKF WP
Sbjct: 261 AESLVEKTPDEAASLVEGTSDKIQCLEKATSGKFEQSAEETPREITSPAKETSEKFTWPA 320
Query: 62 E-----------------------------------RPTKTTWEEKETSVKTECVAGVTS 86
+ RP K WE+KET VKT CVA VTS
Sbjct: 321 KGRPRKIAWEKKEDTPREIMSPAKETSEKFTWAAKGRPRKIAWEKKETPVKTGCVARVTS 380
Query: 87 NKIEVLEEGTAKMITCPTK-TATKASTN 113
NK +VLE+G +KMI CPTK ++TKAS N
Sbjct: 381 NKTKVLEKGRSKMIACPTKESSTKASAN 408
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 26 CLGKTISGKTEQSARETPRKITRPVKETSEKFAWPQER-PTKTTWEEKE 73
C+ + S KT+ + + I P KE+S K + +R P+++ EE E
Sbjct: 374 CVARVTSNKTKVLEKGRSKMIACPTKESSTKASANDQRFPSESKQEEDE 422
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K EQS +E + +T +KE +EK A
Sbjct: 1659 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1710
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K EQS +E + +T +KE +EK A
Sbjct: 1670 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1721
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K EQS +E + +T +KE +EK A
Sbjct: 1808 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1859
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K EQS +E + +T +KE +EK A
Sbjct: 1630 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1681
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFA 58
E+ E L+E +E + + ++ K EQS +E + +T +KE +EK A
Sbjct: 1304 EKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKKELDKVVTTAIKEETEKVA 1355
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 10 PDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWPQERPTKTTW 69
P + P + ++ +T+S +T ++ P+K+ + ++++F WP+ T +T
Sbjct: 600 PTQKIPETKALKHKLSTTSETVSQRT--IGKKQPKKVEK--NTSTDEFTWPKPNITSSTP 655
Query: 70 EEKET 74
+EKE+
Sbjct: 656 KEKES 660
>gi|239756223 PREDICTED: ankyrin repeat domain-containing protein
ENSP00000383090-like [Homo sapiens]
Length = 270
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 3 ESLVERTPDEAAPLVEGTSDEVQCL 27
E E TPDEAAPLVE T D + L
Sbjct: 239 EGTSEGTPDEAAPLVERTPDMAESL 263
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 AESLVERTPDEAAPLVEGTSDE 23
A LVERTPD A LVE T DE
Sbjct: 249 AAPLVERTPDMAESLVERTPDE 270
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 1 MAESLVERTPDE 12
MAESLVERTPDE
Sbjct: 259 MAESLVERTPDE 270
>gi|169209369 PREDICTED: similar to Putative ankyrin repeat
domain-containing protein ENSP00000383090 [Homo sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 3 ESLVERTPDEAAPLVEGTSDEVQCL 27
E E TPDEAAPLVE T D + L
Sbjct: 162 EGTSEGTPDEAAPLVERTPDMAESL 186
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 AESLVERTPDEAAPLVEGTSDE 23
A LVERTPD A LVE T DE
Sbjct: 172 AAPLVERTPDMAESLVERTPDE 193
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 1 MAESLVERTPDE 12
MAESLVERTPDE
Sbjct: 182 MAESLVERTPDE 193
>gi|239745040 PREDICTED: ankyrin repeat domain-containing protein
ENSP00000383090-like [Homo sapiens]
Length = 270
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 3 ESLVERTPDEAAPLVEGTSDEVQCL 27
E E TPDEAAPLVE T D + L
Sbjct: 239 EGTSEGTPDEAAPLVERTPDMAESL 263
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 AESLVERTPDEAAPLVEGTSDE 23
A LVERTPD A LVE T DE
Sbjct: 249 AAPLVERTPDMAESLVERTPDE 270
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 1 MAESLVERTPDE 12
MAESLVERTPDE
Sbjct: 259 MAESLVERTPDE 270
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 50 VKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTSNKIEVLEEGTAKMITCPTKTATK 109
VK TS +E P KT EE ETS C+A +K E E+ + T ++T
Sbjct: 649 VKRTSSPHK--EESPKKTKTEEDETSEDANCLALSGHDKTEAKEQLDTETSTTQSETIQT 706
Query: 110 AST 112
A++
Sbjct: 707 AAS 709
>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 29 KTISGKTEQSARETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTSNK 88
KT+S + ++ +ET RKI + + E+ + ER W++ T + E + + K
Sbjct: 163 KTVSSSSLKAEKETMRKIEQEKNQALEQ-SKLMERELNPYWKDGGTGLPPEDCSVSSITK 221
Query: 89 IEVLEEG 95
+ V+E+G
Sbjct: 222 VSVVEDG 228
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 4 SLVERTPD--------EAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRP 49
SL+ER P+ + +V GT EV+CLG S K++ S +PR + P
Sbjct: 432 SLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGGR-SPKSQDSYPVSPRPFSSP 484
>gi|148276977 melanoma antigen family A, 1 [Homo sapiens]
Length = 309
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 6 VERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKI--TRPVKETSEKFAWPQER 63
V+ ++PLV GT +EV G T ++ Q A P I TR Q +
Sbjct: 28 VQAATSSSSPLVLGTLEEVPTAGSTDPPQSPQGASAFPTTINFTR------------QRQ 75
Query: 64 PTKTTWEEKETSVKTECV 81
P++ + +E T C+
Sbjct: 76 PSEGSSSREEEGPSTSCI 93
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis critical
region 1 [Homo sapiens]
Length = 1400
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 29 KTISGKTEQSARETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTSNK 88
KT++ ++ + T + V T+ K E PT +T + T++ T+ +
Sbjct: 1157 KTMTTASKTTTTSTITSLPTTVFTTTSKITAGSEIPTASTTDSATTAISTKASGTTVESA 1216
Query: 89 IEVLEEGTAKMITC--PTKTATKASTN 113
A+ T PT T+T S N
Sbjct: 1217 PSTAPPTPAETTTASVPTTTSTTGSEN 1243
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 33 GKTEQSARETPRKIT-RPVKETSEKFAWPQERPTKTTWEEKETSVKTECVAGVTSNKIEV 91
G+ +Q P K+ P+K ++ A RP + +E S+K E V V S + E+
Sbjct: 770 GEQDQMTLRPPEKVDLEPLKSLDQEIA----RPLENENQEFLKSLKEESVEAVKSLETEI 825
Query: 92 LE 93
LE
Sbjct: 826 LE 827
>gi|5803121 protein disulfide isomerase A5 [Homo sapiens]
Length = 519
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 45 KITRPVKETSEKFA-WPQER----PTKTTWEEKETSV 76
K PV T +KF W Q P + TWEE++TSV
Sbjct: 363 KYAVPVLRTKKKFLEWMQNPEAPPPPEPTWEEQQTSV 399
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 8 RTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSE-KFAWPQERPTK 66
R P +P EGTSD + + + ++A PR RPV + KF PQ P
Sbjct: 346 RLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGS 405
Query: 67 TTWE 70
+ E
Sbjct: 406 SACE 409
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 8 RTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSE-KFAWPQERPTK 66
R P +P EGTSD + + + ++A PR RPV + KF PQ P
Sbjct: 346 RLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGS 405
Query: 67 TTWE 70
+ E
Sbjct: 406 SACE 409
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 8 RTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSE-KFAWPQERPTK 66
R P +P EGTSD + + + ++A PR RPV + KF PQ P
Sbjct: 346 RLPLLRSPGPEGTSDAARAPAPGLRDRDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGS 405
Query: 67 TTWE 70
+ E
Sbjct: 406 SACE 409
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 36 EQSARETPRKITRPVKETSEKFAWPQERPTKTTWEEKETSVKTE 79
EQ A+E R I + +E ++K QER K WEE++ + E
Sbjct: 79 EQKAQEEFR-IKKEKEEAAKKRQEEQERKLKEQWEEQQRKEREE 121
>gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog C
[Homo sapiens]
Length = 766
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 7 ERTPDEAAPLVEGTSDEVQCLGKTISGKTEQSARETPRKITRPVKETSEKFAWPQERP 64
E P+EA PL+ S+ VQ L + E + +++ RPV E + P RP
Sbjct: 489 EPAPEEAEPLLLQRSERVQTLEELEELGKEDCFQN--KELPRPVLEGQQSERTPNNRP 544
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.119 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,384,076
Number of Sequences: 37866
Number of extensions: 176259
Number of successful extensions: 523
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 92
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.