Guide to the Human Genome
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Name: LOC100293168 Sequence: fasta or formatted (144aa) NCBI GI: 239757315
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         21           4
 C cysteine            1.4          2           1
 D aspartate           2.1          3           1
 E glutamate           1.4          2           1
 F phenylalanine       0.0          0           0
 G glycine             7.6         11           2
 H histidine           2.8          4           1
 I isoleucine          1.4          2           1
 K lysine              1.4          2           1
 L leucine             4.9          7           1
 M methionine          0.7          1           1
 N asparagine          1.4          2           1
 P proline            22.2         32           3
 Q glutamine           4.9          7           1
 R arginine           12.5         18           3
 S serine             11.8         17           2
 T threonine           2.8          4           1
 V valine              2.8          4           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287177          1.000   PREDICTED: hypothetical protein 
LOC100287177          1.000   PREDICTED: hypothetical protein XP_002343692 
LOC100286967          0.096   PREDICTED: hypothetical protein XP_002342247 
WIPF3                 0.092   WAS/WASL interacting protein family, member 3 [Homo...
LOC100131102          0.089   PREDICTED: hypothetical protein 
LOC100131102          0.085   PREDICTED: hypothetical protein 
LOC100131102          0.085   PREDICTED: hypothetical protein 
SYNPO                 0.085   synaptopodin isoform A 
PDCD7                 0.082   programmed cell death 7 
SAMD1                 0.082   sterile alpha motif domain containing 1 
DBP                   0.074   D site of albumin promoter (albumin D-box) binding p...
SRRM1                 0.071   serine/arginine repetitive matrix 1 
CPSF6                 0.071   cleavage and polyadenylation specific factor 6, 68 ...
SFPQ                  0.071   splicing factor proline/glutamine rich (polypyrimidin...
FMN1                  0.067   formin 1 
FLJ22184              0.067   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.067   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.067   PREDICTED: hypothetical protein LOC80164 
SETD1A                0.067   SET domain containing 1A 
ARHGEF15              0.067   Rho guanine exchange factor 15 
C15orf39              0.067   hypothetical protein LOC56905 
NACA                  0.067   nascent polypeptide-associated complex alpha subuni...
WIPF2                 0.067   WIRE protein 
MUC7                  0.064   mucin 7, secreted precursor 
MUC7                  0.064   mucin 7, secreted precursor 
MUC7                  0.064   mucin 7, secreted precursor 
SF3A2                 0.064   splicing factor 3a, subunit 2 
PRR12                 0.064   proline rich 12 
WAS                   0.064   Wiskott-Aldrich syndrome protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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