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Search of human proteins with 239757315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757315 PREDICTED: hypothetical protein [Homo sapiens] 307 2e-84
gi|239751820 PREDICTED: hypothetical protein [Homo sapiens] 307 2e-84
gi|239746311 PREDICTED: hypothetical protein XP_002343692 [Homo ... 307 2e-84
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 52 2e-07
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 51 3e-07
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 50 7e-07
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 49 1e-06
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 49 1e-06
gi|40353727 synaptopodin isoform A [Homo sapiens] 49 1e-06
gi|22027541 programmed cell death 7 [Homo sapiens] 48 2e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 48 3e-06
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 46 9e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 45 2e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 45 2e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 45 2e-05
gi|157168329 formin 1 [Homo sapiens] 44 4e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 6e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 6e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 44 6e-05
gi|55741677 SET domain containing 1A [Homo sapiens] 44 6e-05
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 44 6e-05
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 44 6e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 44 6e-05
gi|18959210 WIRE protein [Homo sapiens] 44 6e-05
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 43 8e-05
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 43 8e-05
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 43 8e-05
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 43 8e-05
gi|153792074 proline rich 12 [Homo sapiens] 43 8e-05
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 43 1e-04
>gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 307 bits (787), Expect = 2e-84
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR
Sbjct: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR
Sbjct: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
Query: 121 RWGHPQDAQKGGSGHRLPSPPTQS 144
RWGHPQDAQKGGSGHRLPSPPTQS
Sbjct: 121 RWGHPQDAQKGGSGHRLPSPPTQS 144
>gi|239751820 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 307 bits (787), Expect = 2e-84
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR
Sbjct: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR
Sbjct: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
Query: 121 RWGHPQDAQKGGSGHRLPSPPTQS 144
RWGHPQDAQKGGSGHRLPSPPTQS
Sbjct: 121 RWGHPQDAQKGGSGHRLPSPPTQS 144
>gi|239746311 PREDICTED: hypothetical protein XP_002343692 [Homo
sapiens]
Length = 144
Score = 307 bits (787), Expect = 2e-84
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR
Sbjct: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR
Sbjct: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
Query: 121 RWGHPQDAQKGGSGHRLPSPPTQS 144
RWGHPQDAQKGGSGHRLPSPPTQS
Sbjct: 121 RWGHPQDAQKGGSGHRLPSPPTQS 144
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 52.0 bits (123), Expect = 2e-07
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 38/169 (22%)
Query: 6 AEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPT------------NWVSP----- 48
A P A P P R P AA AP G LP P +W
Sbjct: 166 APAPAARPSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAPLGHGGVDWAENKERPR 225
Query: 49 -LQYRSSEDVSYRPQKAGPRSAIAP-----PQPPPAPPVPARARSPQPGPASRC-HSNAL 101
L+ RS +RP G + P P+P P P +P RAR PQPG RC A+
Sbjct: 226 RLRLRSQR---FRPPSPGAARSQLPETARRPRPRPRPALPRRAREPQPGSGRRCRRDTAV 282
Query: 102 R--SSIPSSAR---LASGGRRRARRWGHPQDAQKGGSGHRLP-SPPTQS 144
R P S+R L GR + WGH + HRL SP ++S
Sbjct: 283 RWPRQAPYSSRGHDLERPGRCKTGLWGH-----SAHTSHRLRISPKSES 326
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 51.2 bits (121), Expect = 3e-07
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAP-APTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
PA DA+ PPAPP PP LP A+ +P A PLP + + PL +S
Sbjct: 282 PAQDAQEPPAPP--PP--LPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPS-FQAP 336
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPG 91
PQKAG ++ APP PP + P + R +PG
Sbjct: 337 PQKAGAQALPAPPAPPGSQPFLQKKRHGRPG 367
Score = 36.2 bits (82), Expect = 0.010
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 23/156 (14%)
Query: 9 PPAPPLGPPARLPVTAAAAP--APTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP-QKAG 65
PP PP PPA + A P AP P+P P + P Y + P Q A
Sbjct: 231 PPTPPPLPPASVLSDKAVKPQLAPLHLPPIPP---PLPLLPPCGYPGLKAEPASPAQDAQ 287
Query: 66 PRSAIAPPQPP----------PAPPVP---ARARSPQPGPASRCHSNALRSSIPSSARLA 112
A PP PP PAPP+P + + +P P P A + A A
Sbjct: 288 EPPAPPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPA 347
Query: 113 ----SGGRRRARRWGHPQDAQKGGSGHRLPSPPTQS 144
G + ++ H + GG + P+PP +S
Sbjct: 348 PPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPARS 383
Score = 35.8 bits (81), Expect = 0.013
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
P A PP PP PP P +++P T PL VSP + ++ P
Sbjct: 169 PNVPAPPPPTPPPPPPPLPPPLPSSSPIKT---PL---------VSPPGPLTKGNL---P 213
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSI 105
A P PP PPP PP P P PAS A++ +
Sbjct: 214 VVAPPVPCAPPPPPPPPPPTP-----PPLPPASVLSDKAVKPQL 252
Score = 32.0 bits (71), Expect = 0.18
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 15 GPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIAPPQ 74
GP +R P + P T PL + P + + ++ RP P PP
Sbjct: 125 GPGSRAP--SPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPP 182
Query: 75 PPPAPPVPARARSP-------QPGPASRCHSNALRSSIP 106
PPP PP P + SP PGP ++ + + +P
Sbjct: 183 PPPLPP-PLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVP 220
Score = 31.6 bits (70), Expect = 0.24
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 70 IAPPQPPPAPPVPARARSPQPGPAS 94
+ PP PPP PP P +P P P S
Sbjct: 3 VPPPPPPPLPPPPPPLGAPPPPPPS 27
Score = 30.0 bits (66), Expect = 0.70
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 72 PPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPS--SARLA 112
PP PPP PP+ A P P +++LR + P SA LA
Sbjct: 9 PPLPPPPPPLGAPPPPPPSAPPVSTDTSSLRRADPKGRSALLA 51
Score = 26.6 bits (57), Expect = 7.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 72 PPQPPPAPPVPARARSPQPGPAS 94
PP PP PP P P P P++
Sbjct: 6 PPPPPLPPPPPPLGAPPPPPPSA 28
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 50.1 bits (118), Expect = 7e-07
Identities = 40/106 (37%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PA A HPPAP PA ++A AA P R P P + SPL P
Sbjct: 50 PAPAAAHPPAPR-ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPL-----------P 97
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPS 107
PR A A P P P+PAR SP P P S A +SS+P+
Sbjct: 98 PALQPRGAPAVPAAPSPGPLPARPSSPPPSPPSPPVPTA-QSSLPA 142
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 48.9 bits (115), Expect = 1e-06
Identities = 41/111 (36%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PA A HPPAP PA ++A AA P R P P + SPL P
Sbjct: 50 PAPAAAHPPAPR-ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPL-----------P 97
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLA 112
PR A A P P P+PAR SP P P+ S R +P SA A
Sbjct: 98 PALQPRGAPAVPAAPSPGPLPARPSSPPPRPS--LPSGPHRPVLPPSALAA 146
Score = 34.3 bits (77), Expect = 0.037
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 1 MPAGDAEHPPAP--PLGPPAR-LPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDV 57
+PA + PP P P GP LP +A AAP P RPLP S V
Sbjct: 117 LPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGS----------------V 160
Query: 58 SYRPQKAGPRSAIAPPQPPPAPPVPA 83
+ R Q+ PRS P PV A
Sbjct: 161 TAREQEQRPRSRRRAGAPEALGPVHA 186
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 48.9 bits (115), Expect = 1e-06
Identities = 41/111 (36%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PA A HPPAP PA ++A AA P R P P + SPL P
Sbjct: 50 PAPAAAHPPAPR-ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPL-----------P 97
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLA 112
PR A A P P P+PAR SP P P+ S R +P SA A
Sbjct: 98 PALQPRGAPAVPAAPSPGPLPARPSSPPPRPS--LPSGPHRPVLPPSALAA 146
Score = 34.3 bits (77), Expect = 0.037
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 1 MPAGDAEHPPAP--PLGPPAR-LPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDV 57
+PA + PP P P GP LP +A AAP P RPLP S V
Sbjct: 117 LPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGS----------------V 160
Query: 58 SYRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRR 117
+ R Q+ PRS P P R + + S L + S+A + + G R
Sbjct: 161 TAREQEQRPRSRRRAGAPEALGPALTRIHNVEGSKDSWNCGQGLLLLMLSAAPVRTPGLR 220
Query: 118 RARRWG 123
A G
Sbjct: 221 LASSAG 226
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 48.9 bits (115), Expect = 1e-06
Identities = 40/112 (35%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
PP PP PP P + + +P R P P+ + L R+ + + R + A PRS
Sbjct: 720 PPLPP--PPPMSPSWSERSVSPLR--PETEARPPSRQLQALLARNIINAARR-KSASPRS 774
Query: 69 A-----------IAPPQPPPAPPVPARARSPQPG-PASRCHSNALRSSIPSS 108
A APP PPP PP P R RSPQP P S A + IP S
Sbjct: 775 AGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRS 826
Score = 34.7 bits (78), Expect = 0.028
Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 6 AEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAG 65
A PP PP PP R+ A P + P + P AG
Sbjct: 788 APPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRS----------------PLPAG 831
Query: 66 PRSAIAPPQPPPAPPVP-ARARSPQPGPAS 94
P S +P P PAPP P RSP S
Sbjct: 832 PSSCTSPRSPLPAPPRPFLYRRSPTDSDVS 861
Score = 27.3 bits (59), Expect = 4.5
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 57 VSYRPQKAGPRSAIA--PPQPPPAPPVPA---RARSP-----QPGPASRCHSNALRSSIP 106
VS P + G S+++ PP PPP P P+ R+ SP + P SR L +I
Sbjct: 703 VSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNII 762
Query: 107 SSARLASGGRRRARRWGHPQDAQKGGSGHRLPSPP 141
++AR S R A + + S R P PP
Sbjct: 763 NAARRKSASPRSA-----GAENPRPFSPPRAPPPP 792
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 48.1 bits (113), Expect = 2e-06
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSP---LQYRSSEDVSYRPQKAG 65
PPAP PP LP A P P R P P S P ++ P LQ R+S + S + G
Sbjct: 21 PPAPFGCPPPPLPSPAFPPPLPQRPGPFPGASAP--FLQPPLALQPRASAEAS---RGGG 75
Query: 66 PRSAIAPPQPPPAPPVPARARSPQPG 91
A P PPP PP P + R P PG
Sbjct: 76 GAGAFYPVPPPPLPPPPPQCR-PFPG 100
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.8 bits (112), Expect = 3e-06
Identities = 33/91 (36%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
PPAPP P AAAAP PT P P P +P R +A +
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPP--PAPVAAAAPA----------RAPRAAAAA 155
Query: 69 AIAPPQPPPAPPVPARAR-----SPQPGPAS 94
A APP P PA P P R +P P PA+
Sbjct: 156 ATAPPSPGPAQPGPRAQRAAPLAAPPPAPAA 186
Score = 40.8 bits (94), Expect = 4e-04
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 9 PPAP-PLGPPARLPVTAAAA------PAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PPAP PAR P AAAA P P + P R+ P +P ++ P
Sbjct: 136 PPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPL--AAPPPAPAAPPAVAPP 193
Query: 62 QKAGPRSA-----------IAPPQPPPAPPVPARARSPQPGP 92
AGPR A + PP PPAPP + PQP P
Sbjct: 194 --AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQP 233
Score = 36.2 bits (82), Expect = 0.010
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 28 PAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR--PQKAGPRSAIAPPQPPPAP---PVP 82
P P R R + V + Y+ S +SYR + PR PP PP AP P
Sbjct: 64 PEPERTRAELEKLIQQRAVLRVSYKGS--ISYRNAARVQPPRRGATPPAPPRAPRGAPAA 121
Query: 83 ARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRWGHPQDAQKGGSGHR---LPS 139
A A +P P PA + ++ P+ A A+ A P AQ G R L +
Sbjct: 122 AAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP--PSPGPAQPGPRAQRAAPLAA 179
Query: 140 PP 141
PP
Sbjct: 180 PP 181
Score = 29.6 bits (65), Expect = 0.91
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 49 LQYRSSEDVSYRPQKAGPRSA-IAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPS 107
+Q R+ VSY+ + +A + PP+ PP P RA P A+ + P
Sbjct: 77 IQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPP 136
Query: 108 SARLASGGRRRARRWGHPQDAQKGGSGHRLPSPPTQ 143
A +A+ RA R G P P Q
Sbjct: 137 PAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQ 172
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 46.2 bits (108), Expect = 9e-06
Identities = 44/131 (33%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRS----CPTNWVSPLQYRSSED 56
+PA P GP A P A RGRP P + P W L + D
Sbjct: 58 LPAATTPGPGLETAGP-ADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPFG---D 113
Query: 57 VSYRPQKAGPRSAIAPPQPPPA-----PPVPARARSPQPGPASRCHSNALRSS---IPSS 108
V Y A PP PPP P PAR +P PGP S C S + RSS P+
Sbjct: 114 VEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS-CGSASPRSSPGHAPAR 172
Query: 109 ARLASGGRRRA 119
A L + RA
Sbjct: 173 AALGTASGHRA 183
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 45.4 bits (106), Expect = 2e-05
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 29/163 (17%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGR------------PLPYRSCPT--NWVS 47
P G P+PP P R + + AP P R R P P R P+ +
Sbjct: 542 PRGRRRRSPSPP---PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598
Query: 48 PLQYRSSEDVSYRPQKAGPRSAIAPPQPP-----PAPPVPAR-ARSPQPGPASRCHSNAL 101
P+Q R Y P R +PP PP P+PP R + SP P S +
Sbjct: 599 PIQRR------YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRR 652
Query: 102 RSSIPSSARLASGGRRRARRWGHPQDAQKGGSGHRLPSPPTQS 144
S+ S R S R R PQ ++ R +P T S
Sbjct: 653 SPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSS 695
Score = 38.5 bits (88), Expect = 0.002
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 19/154 (12%)
Query: 2 PAGDAEHPPAP----PLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVS--PLQYRSSE 55
P + H P+P P + PV A+ +P R + + P VS P + +
Sbjct: 676 PQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKK 735
Query: 56 DVSYRPQK----AGPRSAIAPPQP----PPAPPVPARARSPQPG-----PASRCHSNALR 102
S PQ + RS P+P PPAPP P +++SP P + S
Sbjct: 736 AASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPS 795
Query: 103 SSIPSSARLASGGRRRARRWGHPQDAQKGGSGHR 136
S P ++ GG+++ ++ K H+
Sbjct: 796 PSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHK 829
Score = 32.3 bits (72), Expect = 0.14
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 28 PAPTRGRPLPYRSCPTNWVSP------------LQYRSSEDVSYRPQKAGPRSAIAPPQP 75
P+P R RP P R P + P + RSS +S + + +PP+
Sbjct: 315 PSPRR-RPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKK 373
Query: 76 PP----APPVPARARSPQPGPASRCHSNALRSSIPSSAR 110
PP +PP R SP P R H + ++ P R
Sbjct: 374 PPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTR 412
Score = 30.4 bits (67), Expect = 0.54
Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 22/117 (18%)
Query: 10 PAPPLGPPARLPVTAAAAPAPTRGR----PLPYRSCPTNWVSPLQYRSSEDVSYRPQKAG 65
P+P P R P P R R P+ R + +S SS S P K
Sbjct: 315 PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKP 374
Query: 66 PRSAIAPPQP------------------PPAPPVPARARSPQPGPASRCHSNALRSS 104
P+ +PP+ PPA P P SP P ++R + + S
Sbjct: 375 PKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVS 431
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 45.1 bits (105), Expect = 2e-05
Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PAG PP PPLGPP P P P + P P P P +
Sbjct: 231 PAGQT--PPRPPLGPPG--PPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQ 286
Query: 62 QKAGPRSAIAPPQ-----PPPAPPVPARARSPQPGP 92
GP PP PPP PP P + P PGP
Sbjct: 287 PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322
Score = 41.2 bits (95), Expect = 3e-04
Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 1 MPAGDAEHPPAPPLGPPARLPV--TAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
+P GD PA P GPP P T P G P P P V P +
Sbjct: 211 VPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRG 270
Query: 59 YRPQKAGPRSAIAPPQP---------PPAPPVPARARSPQPGP 92
RP P + P QP PP PP P P PGP
Sbjct: 271 DRP----PPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP 309
Score = 35.0 bits (79), Expect = 0.022
Identities = 26/85 (30%), Positives = 29/85 (34%), Gaps = 22/85 (25%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
PP P GPP P P +G P P P PL GP
Sbjct: 298 PPVPGYGPPP-------GPPPPQQGPPPPPGPFPPRPPGPL---------------GPPL 335
Query: 69 AIAPPQPPPAPPVPARARSPQPGPA 93
+APP P PP A +P PA
Sbjct: 336 TLAPPPHLPGPPPGAPPPAPHVNPA 360
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 45.1 bits (105), Expect = 2e-05
Identities = 40/146 (27%), Positives = 47/146 (32%), Gaps = 23/146 (15%)
Query: 4 GDAEHPPAPPLGPPARLPVTAA---AAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
G PPA PPA P + A + P PT P S P
Sbjct: 120 GVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPG---------------A 164
Query: 61 PQKAGPRSAI--APPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRR 118
P P S + PPQ PP PA P PGP + GG
Sbjct: 165 PPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGL 224
Query: 119 ARRWGHPQDAQKGGS---GHRLPSPP 141
+ GHP+ +GG G R PP
Sbjct: 225 STPGGHPKPPHRGGGEPRGGRQHHPP 250
Score = 28.9 bits (63), Expect = 1.6
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
M G + P PP+ PP P P P + P P + P
Sbjct: 47 MGPGPGQSGPKPPIPPPP--PHQQQQQPPPQQ--PPPQQPPPHQ---------------P 87
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSS 108
P P PP PP P A+ P P P A S+ P++
Sbjct: 88 PPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPAT 135
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 44.3 bits (103), Expect = 4e-05
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 22/93 (23%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAP--TRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
+P A PP PPL P+ L + A P P + G PLP P
Sbjct: 645 LPPPPASIPPPPPL--PSGLGSLSPAPPMPPVSAGPPLPPPPPP---------------- 686
Query: 59 YRPQKAGPRSAIAPPQPPPAPPVPARARSPQPG 91
P P S+ PP PPP PP+P P PG
Sbjct: 687 --PPPLPPPSSAGPPPPPPPPPLPNSPAPPNPG 717
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 43.5 bits (101), Expect = 6e-05
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 15/152 (9%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRS-SEDVSY 59
+P+ A P P P A LP++ A P P + P + P V P S +
Sbjct: 531 LPSPPASFPGQAPFSPSASLPMSPLATPPP---QAPPVLAAPLLQVPPSPPASPTLQAPR 587
Query: 60 RPQKAGPRSAIAPPQ------PPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLAS 113
RP GP ++++ P+ P P PP S GP HS++ +S P R
Sbjct: 588 RPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSS-ATSTPEELRGYD 646
Query: 114 GGRRRARRWGHPQDAQKG----GSGHRLPSPP 141
G P DA+ + R P+PP
Sbjct: 647 SGPEGGAAASPPPDAELAACHPAAWSRGPAPP 678
Score = 40.8 bits (94), Expect = 4e-04
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
P +PP PP + P + A+P + P ++ P+ PLQ S S P + S
Sbjct: 439 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPAS--PPMS--PS 494
Query: 69 AIAPPQPPP---APPVPARARSPQPGPA 93
A PPQ PP APP+ PQ PA
Sbjct: 495 ATPPPQAPPPLAAPPLQLAKPPPQAPPA 522
Score = 40.8 bits (94), Expect = 4e-04
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 29/113 (25%)
Query: 9 PPAPPLGPPARLPVTAAA-APAPTRGRPL-----PYRSCPTNWVSPLQYRSSEDVSY--- 59
PP+PP PP T AP P PL P ++ P PLQ S S+
Sbjct: 482 PPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQ 541
Query: 60 ---RPQKAGPRSAIA-----------------PPQPPPAPPVPARARSPQPGP 92
P + P S +A PP PP +P + A R P PGP
Sbjct: 542 APFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP 594
Score = 39.3 bits (90), Expect = 0.001
Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 10 PAPPLGPPARLPVTAAAAPA--PTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPR 67
P+PPL P A P A A A P + P P S P +SPL S + P
Sbjct: 382 PSPPLSPLATPPPQAPPALALPPLQAPPSPPASPP---LSPLATPSPQ----APNALAVH 434
Query: 68 SAIAPPQPPPAPPVPARARSPQPGPAS 94
AP PPP+PPV A P P S
Sbjct: 435 LLQAPFSPPPSPPVQAPFSPPASPPVS 461
Score = 35.8 bits (81), Expect = 0.013
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 9 PP--APPLGPPARLPVTAAAAPAPTRGRPL-------PYRSCPTNWV-SPLQYRSSEDVS 58
PP APP PPA P++ A P+P L P+ P+ V +P +S VS
Sbjct: 403 PPLQAPP-SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS 461
Query: 59 ---YRPQKAGPRSAIAPPQPPPAPPV-PARARSPQPGP 92
P +A P A P Q PP+PP P + S P P
Sbjct: 462 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP 499
Score = 35.0 bits (79), Expect = 0.022
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVS-PLQYRSSEDVSYR 60
P+ + P +PP PP T + P+ P P + P+ S P+ ++
Sbjct: 444 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP-PLQVPPSPPASPPMSPSATPPPQAP 502
Query: 61 PQKAGPRSAIA--PPQPPPAPPVPARARSPQPGPAS 94
P A P +A PPQ PPA P P P PAS
Sbjct: 503 PPLAAPPLQLAKPPPQAPPALATPPLQALPSP-PAS 537
Score = 34.3 bits (77), Expect = 0.037
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 6 AEHPPAPPLGPPARLPVTAAAAP-----APTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
A P +P PP++ P + AA P +P P+ + P P ++
Sbjct: 456 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKP 515
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
P +A P A P Q P+PP ++P AS
Sbjct: 516 PPQAPPALATPPLQALPSPPASFPGQAPFSPSAS 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 13 PLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDV-SYRPQKAGPRSAIA 71
PL PP+ +AP + P P + P+ + L + + S+ P A
Sbjct: 339 PLAPPS------PSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATP 392
Query: 72 PPQPPPAPPVPARARSPQPGPAS 94
PPQ PPA +P P P PAS
Sbjct: 393 PPQAPPALALPPLQAPPSP-PAS 414
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.5 bits (101), Expect = 6e-05
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 15/152 (9%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRS-SEDVSY 59
+P+ A P P P A LP++ A P P + P + P V P S +
Sbjct: 800 LPSPPASFPGQAPFSPSASLPMSPLATPPP---QAPPVLAAPLLQVPPSPPASPTLQAPR 856
Query: 60 RPQKAGPRSAIAPPQ------PPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLAS 113
RP GP ++++ P+ P P PP S GP HS++ +S P R
Sbjct: 857 RPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSS-ATSTPEELRGYD 915
Query: 114 GGRRRARRWGHPQDAQKG----GSGHRLPSPP 141
G P DA+ + R P+PP
Sbjct: 916 SGPEGGAAASPPPDAELAACHPAAWSRGPAPP 947
Score = 41.2 bits (95), Expect = 3e-04
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAP-----APTRGRPLPYRSCPTNWVSPLQYRSSED 56
P+ A P +P PP + P AA P +P P+ + P V PL
Sbjct: 708 PSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQ 767
Query: 57 VSYRPQKAGPRSAIA--PPQPPPAPPVPARARSPQPGPAS 94
V P + P S +A PPQ PPA P P P PAS
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSP-PAS 806
Score = 40.8 bits (94), Expect = 4e-04
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS-------YRP 61
P +PP PP + P + A+P + P ++ P+ PLQ S S P
Sbjct: 664 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPP 723
Query: 62 QKAGPRSAIAPPQPPPAPPV-PARARSPQPGP 92
+A P A P Q PP+PP P + S P P
Sbjct: 724 PQAPPPLAAPPLQVPPSPPASPPMSPSATPPP 755
Score = 40.0 bits (92), Expect = 7e-04
Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 34/125 (27%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAP-----APTRGRPL------PYRSCPTNWVSPLQ 50
P+ A P +P PP R+P AA P +P P+ P ++ P PLQ
Sbjct: 739 PSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQ 798
Query: 51 YRSSEDVSY------RPQKAGPRSAIA-----------------PPQPPPAPPVPARARS 87
S S+ P + P S +A PP PP +P + A R
Sbjct: 799 ALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRP 858
Query: 88 PQPGP 92
P PGP
Sbjct: 859 PTPGP 863
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 9 PPAPPL----GPPARLPVTAAAAP---APTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PP+PP+ PPA PV+ +A P AP P + P+ SP S+ P
Sbjct: 668 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 727
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGP 92
PP PP +PP+ A P P
Sbjct: 728 PPLAAPPLQVPPSPPASPPMSPSATPPPRVP 758
Score = 37.4 bits (85), Expect = 0.004
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 22/83 (26%)
Query: 11 APPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAI 70
AP LGP + P+ A +P+ T+ RP+P P N +PL A
Sbjct: 293 APALGPLSSSPL-ATPSPSGTKARPVPP---PDNAATPLP------------------AT 330
Query: 71 APPQPPPAPPVPARARSPQPGPA 93
PP PP A P+P SP P+
Sbjct: 331 LPPSPPLATPLPLAPPSPSAPPS 353
Score = 37.4 bits (85), Expect = 0.004
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 10 PAPPLGPPARLPVTAAAAPA--PTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPR 67
P+PPL P A P A A P + P P S P +SPL S + P
Sbjct: 607 PSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPP---LSPLATPSPQ----APNALAVH 659
Query: 68 SAIAPPQPPPAPPVPARARSPQPGPAS 94
AP PPP+PPV A P P S
Sbjct: 660 LLQAPFSPPPSPPVQAPFSPPASPPVS 686
Score = 35.8 bits (81), Expect = 0.013
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 9 PP--APPLGPPARLPVTAAAAPAPTRGRPL-------PYRSCPTNWV-SPLQYRSSEDVS 58
PP APP PPA P++ A P+P L P+ P+ V +P +S VS
Sbjct: 628 PPLQAPP-SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS 686
Query: 59 ---YRPQKAGPRSAIAPPQPPPAPPV-PARARSPQPGP 92
P +A P A P Q PP+PP P + S P P
Sbjct: 687 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP 724
Score = 32.7 bits (73), Expect = 0.11
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
P+G P PP A P+ A P+P PLP P + +P ++ P
Sbjct: 309 PSGTKARPVPPP--DNAATPLPATLPPSPPLATPLPL--APPSPSAPPSLQTLPSPPATP 364
Query: 62 QKAGPRSAIAPP-QPPPA----PP--VPARARSP 88
P S PP Q PP+ PP VP SP
Sbjct: 365 PSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSP 398
Score = 32.3 bits (72), Expect = 0.14
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 2 PAGDAEHPP--APP--LGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDV 57
P + PP APP PP ++P + A+P + P ++ P PLQ S
Sbjct: 684 PVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPS--- 740
Query: 58 SYRPQKAGPRSAIA--PPQPPPAPPVPARARSPQPGPAS 94
P + P S A PP+ PP P P P PAS
Sbjct: 741 ---PPASPPMSPSATPPPRVPPLLAAPPLQVPPSP-PAS 775
Score = 30.8 bits (68), Expect = 0.41
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
PP+PPL P L + +AP + P P + P+ ++ ++ P +A P
Sbjct: 332 PPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPS--------QAPPSMTTPPMQAPPSL 383
Query: 69 AIAPP-QPPPAPPVPARARSPQP 90
PP Q P + P+ P P
Sbjct: 384 QTIPPIQVPHSLTSPSLQAPPSP 406
Score = 30.8 bits (68), Expect = 0.41
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 2 PAGDAEHPPA---PPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
P PP P L PP P+ A+AP T P CP PLQ S ++
Sbjct: 526 PPASLTTPPLENLPSLAPP---PLQTASAPLTTPHLETP--PCPAP--CPLQAPPSP-LT 577
Query: 59 YRPQKAGPRSAIAPPQPPPAPPVPARARSPQP 90
P + A PPQ PPA P P P
Sbjct: 578 TPPPETPSSIATPPPQAPPALASPPLQGLPSP 609
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 43.5 bits (101), Expect = 6e-05
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 15/152 (9%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRS-SEDVSY 59
+P+ A P P P A LP++ A P P + P + P V P S +
Sbjct: 492 LPSPPASFPGQAPFSPSASLPMSPLATPPP---QAPPVLAAPLLQVPPSPPASPTLQAPR 548
Query: 60 RPQKAGPRSAIAPPQ------PPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLAS 113
RP GP ++++ P+ P P PP S GP HS++ +S P R
Sbjct: 549 RPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSS-ATSTPEELRGYD 607
Query: 114 GGRRRARRWGHPQDAQKG----GSGHRLPSPP 141
G P DA+ + R P+PP
Sbjct: 608 SGPEGGAAASPPPDAELAACHPAAWSRGPAPP 639
Score = 40.8 bits (94), Expect = 4e-04
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
P +PP PP + P + A+P + P ++ P+ PLQ S S P S
Sbjct: 400 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPAS---PPMSP-S 455
Query: 69 AIAPPQPPP---APPVPARARSPQPGPA 93
A PPQ PP APP+ PQ PA
Sbjct: 456 ATPPPQAPPPLAAPPLQLAKPPPQAPPA 483
Score = 40.8 bits (94), Expect = 4e-04
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 29/113 (25%)
Query: 9 PPAPPLGPPARLPVTAAA-APAPTRGRPL-----PYRSCPTNWVSPLQYRSSEDVSY--- 59
PP+PP PP T AP P PL P ++ P PLQ S S+
Sbjct: 443 PPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQ 502
Query: 60 ---RPQKAGPRSAIA-----------------PPQPPPAPPVPARARSPQPGP 92
P + P S +A PP PP +P + A R P PGP
Sbjct: 503 APFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP 555
Score = 39.3 bits (90), Expect = 0.001
Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 10 PAPPLGPPARLPVTAAAAPA--PTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPR 67
P+PPL P A P A A A P + P P S P +SPL S + P
Sbjct: 343 PSPPLSPLATPPPQAPPALALPPLQAPPSPPASPP---LSPLATPSPQ----APNALAVH 395
Query: 68 SAIAPPQPPPAPPVPARARSPQPGPAS 94
AP PPP+PPV A P P S
Sbjct: 396 LLQAPFSPPPSPPVQAPFSPPASPPVS 422
Score = 35.8 bits (81), Expect = 0.013
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 9 PP--APPLGPPARLPVTAAAAPAPTRGRPL-------PYRSCPTNWV-SPLQYRSSEDVS 58
PP APP PPA P++ A P+P L P+ P+ V +P +S VS
Sbjct: 364 PPLQAPP-SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS 422
Query: 59 ---YRPQKAGPRSAIAPPQPPPAPPV-PARARSPQPGP 92
P +A P A P Q PP+PP P + S P P
Sbjct: 423 PSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP 460
Score = 35.0 bits (79), Expect = 0.022
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVS-PLQYRSSEDVSYR 60
P+ + P +PP PP T + P+ P P + P+ S P+ ++
Sbjct: 405 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP-PLQVPPSPPASPPMSPSATPPPQAP 463
Query: 61 PQKAGPRSAIA--PPQPPPAPPVPARARSPQPGPAS 94
P A P +A PPQ PPA P P P PAS
Sbjct: 464 PPLAAPPLQLAKPPPQAPPALATPPLQALPSP-PAS 498
Score = 34.3 bits (77), Expect = 0.037
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 6 AEHPPAPPLGPPARLPVTAAAAP-----APTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
A P +P PP++ P + AA P +P P+ + P P ++
Sbjct: 417 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKP 476
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
P +A P A P Q P+PP ++P AS
Sbjct: 477 PPQAPPALATPPLQALPSPPASFPGQAPFSPSAS 510
Score = 30.4 bits (67), Expect = 0.54
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 11 APPLGPPARLPVTA---AAAPAPT-----RGRPLPYRSCPTNWVSPLQYRSSEDV-SYRP 61
AP LGP + P+ +A P+P+ + P P + P+ + L + + S+ P
Sbjct: 284 APALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLP 343
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
A PPQ PPA +P P P PAS
Sbjct: 344 SPPLSPLATPPPQAPPALALPPLQAPPSP-PAS 375
Score = 28.1 bits (61), Expect = 2.7
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPA----PTRGRPL-------PYRSCPTNWVSPLQ 50
PA + A PL PAR +A P P++ +P P + P +P
Sbjct: 228 PASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPAL 287
Query: 51 YRSSEDVSYRPQKAGPRSAIAPP--QPPPAPPV--PARARSPQPGPASRCHSNALRSSIP 106
S P + P S APP Q P+PP P++A + P + A S +P
Sbjct: 288 GPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQ----ATHSFLP 343
Query: 107 S 107
S
Sbjct: 344 S 344
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 43.5 bits (101), Expect = 6e-05
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 2 PAGDAEH-PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
PAG E PP+ PL PP P APAP RP S P + P + R + VS+
Sbjct: 1118 PAGPTEESPPSAPLRPPE--PPAGPPAPAP---RPDERPSSPIPLLPPPKKRR-KTVSFS 1171
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRAR 120
+ P P+PPPA P A+ PGPASR + +I L +
Sbjct: 1172 AIEVVPA-----PEPPPATPPQAKF----PGPASRKAPRGVERTI---RNLPLDHASLVK 1219
Query: 121 RWGHPQDAQKGG 132
W P++ +GG
Sbjct: 1220 SW--PEEVSRGG 1229
Score = 39.7 bits (91), Expect = 9e-04
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 1 MPAGDAEHPPAPPLGPPARLPV--TAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
+P+G P PP P V T + P TR P ++ N SP ++S
Sbjct: 530 VPSGSGHGPCTPPPAPANFEDVAPTGSGEPGATRESP---KANGQNQASPCSSGDDMEIS 586
Query: 59 YRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGP 92
+ P A PPQ PP PP P P P P
Sbjct: 587 DDDRGGSPPPAPTPPQQPPPPPPP-----PPPPP 615
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 5 DAEHPPAPPLG--PPARLPVTAAA---APAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSY 59
+ E P A P PP +PV A P P R P P SP + + S
Sbjct: 1067 EEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEES- 1125
Query: 60 RPQKAGPRSAIAPPQPPPAPPVPARARSPQP 90
P + + PP+PP PP PA +P
Sbjct: 1126 -----PPSAPLRPPEPPAGPPAPAPRPDERP 1151
Score = 30.4 bits (67), Expect = 0.54
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 16 PPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKA-GPRSAIAPPQ 74
PPA P P P P PY + PL Y + P + GP PP
Sbjct: 595 PPAPTPPQQPPPPPPPPPPPPPYLAS-----LPLGYPPHQPAYLLPPRPDGPPPPEYPPP 649
Query: 75 PPPAPPV 81
PPP P +
Sbjct: 650 PPPPPHI 656
Score = 29.3 bits (64), Expect = 1.2
Identities = 33/121 (27%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 8 HPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPR 67
H PP P A A P Y T+++ P R + D YRP P
Sbjct: 379 HTSYPPRRATREEPPGAPFAENTAERFPPSY----TSYLPPEPSRPT-DQDYRP----PA 429
Query: 68 SAIAPPQPP---------------------PAPPVPARARSPQPGPASRCHSNALRSSIP 106
S PP+PP P P PAR+ SP P + A SS+
Sbjct: 430 SEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPARSGSPAPETTNESVPFAQHSSLD 489
Query: 107 S 107
S
Sbjct: 490 S 490
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 43.5 bits (101), Expect = 6e-05
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
PPA L PPA LP +A+ A ++ P S PT SP+ RS+ P+ A PRS
Sbjct: 65 PPAASLKPPALLPPSASRASLDSQTSPDSPSSTPT--PSPVSRRSAS-----PEPA-PRS 116
Query: 69 AIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRWGHPQDA 128
+ PP+P +P P P G ++ N S+ + RLA GR G QDA
Sbjct: 117 PVPPPKPSGSPCTPL---LPMAGVLAQ---NGSASAPGTVRRLA--GRFEGGAEGRAQDA 168
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 43.5 bits (101), Expect = 6e-05
Identities = 36/91 (39%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 10 PAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSA 69
PAP P A +P T +APAPT+ P P S P Q S + P A
Sbjct: 659 PAPL--PAAVVPSTPTSAPAPTQPAPTP-TSGPIGLRILAQQPLSVTCFSLALPSPPAVA 715
Query: 70 IAPPQPPPAP-PVPARA------RSPQPGPA 93
+A P P PAP P PARA R P P PA
Sbjct: 716 VASPAPAPAPSPAPARAQAPASARDPAPAPA 746
Score = 30.8 bits (68), Expect = 0.41
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 33 GRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIAPPQPPPAPPV-------PARA 85
G P+ R P P + + PQK R PP PP P + P R
Sbjct: 459 GPPIVIRDSPVPCTPPALPPCARECQSLPQKEDAR----PPSSPPMPVIDNVFSLAPYRD 514
Query: 86 RSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRWGHPQDAQKGGSGHR 136
P P + ++ + P SA S G+ + R P AQ+G SG +
Sbjct: 515 YLDVPAPEATTEPDSATAE-PDSAPATSEGQDKGCRGTLP--AQEGPSGSK 562
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.5 bits (101), Expect = 6e-05
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 2 PAGDAEHPPAPPLGP---PARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
P GD P PL P PA PVT A P++G P P + + +
Sbjct: 1398 PKGDPTSPAVIPLSPKKAPAT-PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGP 1456
Query: 59 YRPQKAGPRS--AIAPPQP--PPAPPVPARARSPQPGPASRCHSNA--LRSSIPSSAR 110
P G + A+ PP P PPAP A + SP+ PA+ A L + IPSS +
Sbjct: 1457 ATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPK 1514
Score = 37.4 bits (85), Expect = 0.004
Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 2 PAGDAEHPPAPPLGP----PARLPVTAAAAPAPTRGRPL--PYRSCPTNWVSPLQYRSSE 55
P A PP+P GP P P AA P +G P + PT +
Sbjct: 940 PTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG 999
Query: 56 DVSYRPQKAGPRSAIAPPQP---PPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLA 112
+ P+ A A+ PP P P A P P A +P + + +P A
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTT 1059
Query: 113 SGGRRRARRWGHPQDAQKGGSGHRLPSPPT 142
+ + G + KG +PP+
Sbjct: 1060 PAATLPSPKGGPATPSLKGAPTPPAATPPS 1089
Score = 35.4 bits (80), Expect = 0.017
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 2 PAGDAEHPPAPPLG----PPARLPVTAAAAPAPTRGRPL--PYRSCPTN-WVSPLQYRSS 54
P A PP+P G P P T AA P +G P P + PT +P +
Sbjct: 1218 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGG 1277
Query: 55 EDVSYRPQKAGPRSAIAPP---------QPPPAPPVPARARSPQP 90
++ P K P A+ P PP P P A P P
Sbjct: 1278 --LATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSP 1320
Score = 35.0 bits (79), Expect = 0.022
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 2 PAGDAEHPPAPP----LGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSE-- 55
P A PP+P PP P A P +G P + P++ P S E
Sbjct: 1310 PTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGP 1369
Query: 56 --DVSYRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
+ K GP A+ PP P P +P SP+ P S
Sbjct: 1370 TPPAATPSHKGGP--AMTPPSPKRGPAIP----SPKGDPTS 1404
Score = 34.7 bits (78), Expect = 0.028
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 8 HPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPR 67
H P PP P P +A P +G LP + PT V L + P+
Sbjct: 854 HSPTPP--SPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPF--------------PK 897
Query: 68 SAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSA 109
A P P AP + + SP+ A+ S P A
Sbjct: 898 EGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGA 939
Score = 33.9 bits (76), Expect = 0.048
Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
P A PP+P GP P A PA T P + P + +P ++
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAAT------- 1132
Query: 62 QKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARR 121
P+ +A P P AP PA A P P L + P A + +
Sbjct: 1133 -PPSPKGGLATPPPKGAPTTPA-ATPPSP-------KGGLATPPPKGAPTTPAATPPSPK 1183
Query: 122 WGHPQDAQKGGSGHRLPSPPT 142
G + KG +PP+
Sbjct: 1184 GGLATPSPKGAPTTPAATPPS 1204
Score = 33.9 bits (76), Expect = 0.048
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRS 68
PP+P GP P A PA T P P P+ A
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPP-----------------PKGAPTPP 1336
Query: 69 AIAPPQPPPAPPVPARARSPQPGPAS 94
A+ PP P P +PA S + GP +
Sbjct: 1337 AVTPPSPKGTPTLPATTPSSKGGPTT 1362
Score = 32.7 bits (73), Expect = 0.11
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 2 PAGDAEHPPAPPLG----PPARLPVTAAAAPAPTRG---RPLPYRSCPTNWVSPLQYRSS 54
P A PP+P G P P T AA P +G P P + PT +
Sbjct: 1172 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP-KGAPTTPAATPPSPKG 1230
Query: 55 EDVSYRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
+ P+ A A PP P P P +P P A+
Sbjct: 1231 GLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270
Score = 32.3 bits (72), Expect = 0.14
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 2 PAGDAEHPPAPPLGP-PARLPVTAAA--APAPTRGRPLPYRSCPTNWVSPLQYRSSEDV- 57
PA P P P P P T ++ A +P P Y+ P SP + V
Sbjct: 1551 PAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAP----SPKELLIPPAVT 1606
Query: 58 SYRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
S P++A A+ PP P P PA +P P +
Sbjct: 1607 SPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVT 1643
Score = 30.8 bits (68), Expect = 0.41
Identities = 36/133 (27%), Positives = 45/133 (33%), Gaps = 49/133 (36%)
Query: 5 DAEHPPAPPLGPP---ARLPVTAAA-------------APAPTRGRPLPYRSCPTNWVSP 48
DA H P PL PP A P+TAAA + AP+ LP P + P
Sbjct: 1753 DASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVPTLPP 1812
Query: 49 LQYRSSEDVSYRPQKAG-----PRSAIAP-------PQPPPAP--------------PVP 82
Q + P G P +AP P PP P P P
Sbjct: 1813 KQ-------QFLPSSPGLVLESPSKPLAPADEDELLPLIPPEPISGGVPFQSVLVNMPTP 1865
Query: 83 ARARSPQPGPASR 95
A P P P+++
Sbjct: 1866 KSAGIPVPTPSAK 1878
Score = 28.1 bits (61), Expect = 2.7
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 10 PAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSA 69
P PL P A L + G PLP ++ SPL SS V AGP SA
Sbjct: 580 PEIPLSPEATLAKKSL-------GEPLPIGKPASSMTSPLGVNSSASVIKTDSYAGPDSA 632
Score = 26.9 bits (58), Expect = 5.9
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 28 PAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIAPPQPPPAPPVPARARS 87
P+ G P + + P+Q SS+ + P+ +APP+ + P+ A A
Sbjct: 1720 PSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFE 1779
Query: 88 ---PQPGPAS 94
P+P AS
Sbjct: 1780 KVLPKPESAS 1789
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 43.5 bits (101), Expect = 6e-05
Identities = 47/158 (29%), Positives = 56/158 (35%), Gaps = 26/158 (16%)
Query: 7 EHPPAPPLGPPARLPVTAAAAPA--PTRGRPLPYR---------SCPTNWVSP-LQYRSS 54
E PPAPP P PV P+ P PYR S PTN +P L R +
Sbjct: 222 EGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHN 281
Query: 55 EDVSYRPQKAGPRSAIAPPQPPPA--------PPVPAR---ARSPQPGPASRCHSNALRS 103
S + GP +APP P A PP PAR +R P P N R
Sbjct: 282 ---SLHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARD 338
Query: 104 SIPSSARLASGGRRRARRWGHPQDAQKGGSGHRLPSPP 141
+ P G R P + +G P PP
Sbjct: 339 APPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPP 376
Score = 39.3 bits (90), Expect = 0.001
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 9 PPAPPLG-----PPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQ- 62
PP PP G PP LP+ ++ APA R +PLP P + P + +P
Sbjct: 177 PPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLP--PTPGQRLHPGREGPPAPPPVKPPP 234
Query: 63 -----KAGPR-SAIAPPQPP--PAPPVPARARSP--QPGPASRCHSNALRSSIPSSAR 110
+ GP ++APP PP P VP SP + P N+L P R
Sbjct: 235 SPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVR 292
Score = 34.7 bits (78), Expect = 0.028
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYR--------- 52
P+G + PP PP P +P ++P LP R + +P R
Sbjct: 243 PSGQSLAPPPPPYRQPPGVP-NGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTS 301
Query: 53 -SSEDVSYRPQKAG---PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSN 99
S +S RP P APP PPP AR +P P P R H +
Sbjct: 302 ASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGAR-DAPPPPPPYRMHGS 351
Score = 32.3 bits (72), Expect = 0.14
Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 12 PPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA 71
PP PPAR P + AAP P P+ P YR K P +
Sbjct: 311 PP--PPARDPPSRGAAPPPPP--PVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRT 366
Query: 72 PPQPPPAPPVPAR 84
P PPP PP P R
Sbjct: 367 PAGPPPPPPPPLR 379
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.1 bits (100), Expect = 8e-05
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAG--- 65
PP PP PA P +++A P T P P + P +PL + + + P
Sbjct: 215 PPTPPATTPA--PPSSSAPPETTAAPPTPSATTP----APLSSSAPPETTAVPPTPSATT 268
Query: 66 --PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSA 109
P SA APP+ APP P+ P + + A + P+S+
Sbjct: 269 LDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSS 314
Score = 33.9 bits (76), Expect = 0.048
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 13 PLGPPARLPVTAAAAPAPTRGRPLP-YRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA 71
P+ PA TAA P P+ P P S P + S+ + A P + A
Sbjct: 156 PVNSPAPQDTTAAP-PTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA 214
Query: 72 PPQPPPAPPVPARARSP 88
PP PP P P + +P
Sbjct: 215 PPTPPATTPAPPSSSAP 231
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 66 PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSS 108
P S+ APP+ APP P+ P ++ + A + P++
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT 221
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.1 bits (100), Expect = 8e-05
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAG--- 65
PP PP PA P +++A P T P P + P +PL + + + P
Sbjct: 215 PPTPPATTPA--PPSSSAPPETTAAPPTPSATTP----APLSSSAPPETTAVPPTPSATT 268
Query: 66 --PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSA 109
P SA APP+ APP P+ P + + A + P+S+
Sbjct: 269 LDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSS 314
Score = 33.9 bits (76), Expect = 0.048
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 13 PLGPPARLPVTAAAAPAPTRGRPLP-YRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA 71
P+ PA TAA P P+ P P S P + S+ + A P + A
Sbjct: 156 PVNSPAPQDTTAAP-PTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA 214
Query: 72 PPQPPPAPPVPARARSP 88
PP PP P P + +P
Sbjct: 215 PPTPPATTPAPPSSSAP 231
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 66 PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSS 108
P S+ APP+ APP P+ P ++ + A + P++
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT 221
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.1 bits (100), Expect = 8e-05
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 9 PPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAG--- 65
PP PP PA P +++A P T P P + P +PL + + + P
Sbjct: 215 PPTPPATTPA--PPSSSAPPETTAAPPTPSATTP----APLSSSAPPETTAVPPTPSATT 268
Query: 66 --PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSA 109
P SA APP+ APP P+ P + + A + P+S+
Sbjct: 269 LDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSS 314
Score = 33.9 bits (76), Expect = 0.048
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 13 PLGPPARLPVTAAAAPAPTRGRPLP-YRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA 71
P+ PA TAA P P+ P P S P + S+ + A P + A
Sbjct: 156 PVNSPAPQDTTAAP-PTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA 214
Query: 72 PPQPPPAPPVPARARSP 88
PP PP P P + +P
Sbjct: 215 PPTPPATTPAPPSSSAP 231
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 66 PRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSS 108
P S+ APP+ APP P+ P ++ + A + P++
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT 221
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 43.1 bits (100), Expect = 8e-05
Identities = 34/105 (32%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 2 PAGDAEHPPAPPLGPPA---RLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
P HPPAP + PPA P PAP P P PT+ V P
Sbjct: 282 PPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA-------- 333
Query: 59 YRPQKAGPRSAIAPPQP---PPAPPVPARARSPQPGPASRCHSNA 100
P P + PP P PPAP V A P P++ H A
Sbjct: 334 --PGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQA 376
Score = 37.4 bits (85), Expect = 0.004
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 1 MPAGD--AEHPPAPPL-GPPARLPVTAAAAPAPTRGRPL----PYRSCPTNWVSPLQYRS 53
+PAG + PP P + G P R P+ + P P G PL P P+ P Q
Sbjct: 223 LPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPP 282
Query: 54 SEDVSYRPQKA--GPRSAIAPPQPPPAPPVPARARSPQPG---PASRCHSNA 100
+ P P S + PP P PP P P PG P S H A
Sbjct: 283 PAPGVHPPAPVVHPPASGVHPPAPGVHPPAPG-VHPPAPGVHPPTSGVHPPA 333
Score = 33.5 bits (75), Expect = 0.063
Identities = 30/97 (30%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
P HPPAP + PPA PAP P P P V P P
Sbjct: 324 PPTSGVHPPAPGVHPPA----PGVHPPAPGVHPPAPGVHPPAPGVHP-----PPSAGVHP 374
Query: 62 QKAGPRSAI------APPQPPPAPPVPARARSPQPGP 92
Q G A AP PPAP + +A P P
Sbjct: 375 QAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQP 411
Score = 29.6 bits (65), Expect = 0.91
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 19/95 (20%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRP 61
PA A HP AP + PPA P AP P P P + S+ V +P
Sbjct: 381 PAAPAVHPQAPGVHPPA--PGMHPQAPGV---HPQP----------PGVHPSAPGVHPQP 425
Query: 62 QKAGPRS-AIAPPQPPP---APPVPARARSPQPGP 92
P + + PP P P PP+P+ P P
Sbjct: 426 PGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPP 460
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 43.1 bits (100), Expect = 8e-05
Identities = 46/170 (27%), Positives = 58/170 (34%), Gaps = 40/170 (23%)
Query: 3 AGDAEHPPAP---------PLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRS 53
AG A PP P LG PA T A+ A G P + P Y
Sbjct: 400 AGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQ 459
Query: 54 ------SEDVSYRPQKAGPRSAIAPPQPPPAPPVPARAR------------------SPQ 89
++D+S P +G PPQPP PP P A P
Sbjct: 460 GFGGGQAQDLSKAPSYSG-----GPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPY 514
Query: 90 PGPASRCHSNALRSSIPSSARLASGGRRRARRWGHPQDAQKGGSGHRLPS 139
PGPA+ HS L ++ PS + + G + GG G PS
Sbjct: 515 PGPAA--HSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPS 562
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 4 GDAEHPPAPPLGPPAR------LPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDV 57
GD + PP GPPA P A+ A T G L P V
Sbjct: 972 GDPKAGAGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPP---------ELPSTV 1022
Query: 58 SYRPQ---KAGPRSAIAPPQPPPAPPVPARARSPQPGPAS 94
+ P ++GP A APP PPP PP PA A P+ G S
Sbjct: 1023 NAEPLGLIQSGPHQA-APPPPPPPPPPPAPASEPKGGLTS 1061
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 1 MPAGDAEHPPAPPL---GPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDV 57
+P+ ++ P PPL PP P P P P P + P SP
Sbjct: 1439 LPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALP----SP--------- 1485
Query: 58 SYRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGP 92
P P + PP P P PP PA P P P
Sbjct: 1486 ---PPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPP 1517
Score = 32.7 bits (73), Expect = 0.11
Identities = 30/102 (29%), Positives = 34/102 (33%), Gaps = 29/102 (28%)
Query: 5 DAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKA 64
D P PPL P A +P P P G P S +N
Sbjct: 1415 DTSTPDGPPLAPAAAVP-----GPPPLPGLP----SANSNGT------------------ 1447
Query: 65 GPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIP 106
P + +PPP PP PA PQP P AL S P
Sbjct: 1448 -PEPPLLEEKPPPTPP-PAPTPQPQPPPPPPPPQPALPSPPP 1487
Score = 30.0 bits (66), Expect = 0.70
Identities = 43/154 (27%), Positives = 54/154 (35%), Gaps = 29/154 (18%)
Query: 9 PPAPPLGPPARLPV-------TAAAAPAPTRGRPLPYRSCPTNWVSPLQYRS---SEDVS 58
PP PP PP LP ++AAA A + P Y P R+ + V
Sbjct: 231 PPDPP-PPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPPERALPRQDTVI 289
Query: 59 YRPQKAGPRSAIAPPQPPPA-------------PPVPARAR---SPQPGPASRCHSNALR 102
Q+ P SA PP PPPA P + RA SP G +
Sbjct: 290 KHYQR--PASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPS 347
Query: 103 SSIPSSARLASGGRRRARRWGHPQDAQKGGSGHR 136
+ PS A + GR A GG G+R
Sbjct: 348 KAGPSGATAGASGRATGPEAAGGGGAGGGGGGYR 381
Score = 30.0 bits (66), Expect = 0.70
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 1 MPAGDAEHPPAPPLGPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYR 60
+ AG + P P PP LP + AP+P+ S V L+ + +
Sbjct: 783 LEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSP-------SASKVGVHLLEPATRDGAPQP 835
Query: 61 PQKAGPRSAIAPPQPPPAPPVP 82
P PP PPP PP+P
Sbjct: 836 P----------PPPPPPPPPMP 847
Score = 28.9 bits (63), Expect = 1.6
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 63 KAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRW 122
+AG ++PP+ P P VPAR PQP PA+ + P S GG A
Sbjct: 1300 QAGLTPPLSPPKSVP-PSVPARGLQPQP-PATPAVPHP-----PPSGAFGLGGALEA--- 1349
Query: 123 GHPQDAQKGGSGHRLPSP 140
A+ G G PSP
Sbjct: 1350 -----AESEGLGLGCPSP 1362
Score = 28.9 bits (63), Expect = 1.6
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 16/110 (14%)
Query: 9 PPAPPL-GPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPR 67
PP P A+ PV+A + AP P P P + S +P + P
Sbjct: 1670 PPVPVRRSGQAKNPVSAGGSSAPPPKAPAP---------PPKPETPEKTTSEKPPEQTPE 1720
Query: 68 SAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRR 117
+A+ P PP P + +P + R P A+ GR+
Sbjct: 1721 TAM------PEPPAPEKPSLLRPVEKEKEKEKVTRGERPLRGERATSGRQ 1764
Score = 28.1 bits (61), Expect = 2.7
Identities = 43/159 (27%), Positives = 56/159 (35%), Gaps = 28/159 (17%)
Query: 6 AEHPPAPPLGPPARLPVTAAA-------APAPTRGRPLPYRSCPTNWVSPLQYRSSEDVS 58
A PP PP PP +P+ A PA R P S + E +
Sbjct: 832 APQPPPPPPPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLP 891
Query: 59 YRPQKAGPRSAIAPPQPPPAPPVPA-RARSPQPGPASR-------CHSNAL-----RSSI 105
P G + PP P A R+ SPQ A R C ++L RS
Sbjct: 892 PAPGDTG----VGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFF 947
Query: 106 PSSARLASGGRR-RARRWGHPQDA--QKGGSGHRLPSPP 141
P+ + GG + G P+D K G+G P PP
Sbjct: 948 PTMEEMFGGGAADDYGKAGPPEDEGDPKAGAGPP-PGPP 985
Score = 27.3 bits (59), Expect = 4.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 2 PAGDAEHPPAPPLGPPARLPVTAAAAPAP 30
PA + PP PP P P AAP+P
Sbjct: 1507 PAMPSPPPPPPPAAAPLAAPPEEPAAPSP 1535
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 61 PQKAGPRSAIAPPQPPPAPPVPARARSPQPG 91
P AGP+ P PP AP P PG
Sbjct: 1408 PPLAGPKDTSTPDGPPLAPAAAVPGPPPLPG 1438
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 42.7 bits (99), Expect = 1e-04
Identities = 44/155 (28%), Positives = 53/155 (34%), Gaps = 23/155 (14%)
Query: 2 PAGDAEHPPAPPL--------GPPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRS 53
P+ P PP+ GP +P+ A P RG P P R P P RS
Sbjct: 319 PSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPATGRS 378
Query: 54 SEDVSYRPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLAS 113
P GP PP PPP P+ P P P L ++ + LA
Sbjct: 379 GPLPPPPPGAGGPPMPPPPPPPPPP---PSSGNGPAPPP--------LPPALVPAGGLAP 427
Query: 114 GGRRRAR----RWGHPQDAQKGGSGHRLPSPPTQS 144
GG R A R G + G PP QS
Sbjct: 428 GGGRGALLDQIRQGIQLNKTPGAPESSALQPPPQS 462
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,557,183
Number of Sequences: 37866
Number of extensions: 661880
Number of successful extensions: 17010
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 1347
Number of HSP's that attempted gapping in prelim test: 6789
Number of HSP's gapped (non-prelim): 7289
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.