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Search of human proteins with 239757244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757244 PREDICTED: hypothetical protein [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757244 PREDICTED: hypothetical protein [Homo sapiens] 399 e-112
gi|239751752 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|239746252 PREDICTED: hypothetical protein XP_002343716 [Homo ... 394 e-110
gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 47 1e-05
gi|41152074 steroid-sensitive protein 1 [Homo sapiens] 47 1e-05
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|120587019 zinc finger protein 318 [Homo sapiens] 41 5e-04
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 41 7e-04
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|53832005 calcium channel, voltage-dependent, R type, alpha 1E... 39 0.003
gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|169167899 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|169167609 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|239756603 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 37 0.013
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 37 0.013
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 37 0.013
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 36 0.023
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 36 0.023
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 36 0.023
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 36 0.023
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 36 0.023
gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ... 35 0.030
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.030
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 35 0.039
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 35 0.039
>gi|239757244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 399 bits (1025), Expect = e-112
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MGSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQP 60
MGSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQP
Sbjct: 1 MGSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQP 60
Query: 61 RPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQ 120
RPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQ
Sbjct: 61 RPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQ 120
Query: 121 VVGGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRC 180
VVGGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRC
Sbjct: 121 VVGGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRC 180
Query: 181 SAPACAAAHL 190
SAPACAAAHL
Sbjct: 181 SAPACAAAHL 190
>gi|239751752 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 394 bits (1011), Expect = e-110
Identities = 187/188 (99%), Positives = 188/188 (100%)
Query: 3 SGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP 62
+GRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP
Sbjct: 24 TGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP 83
Query: 63 TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV 122
TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV
Sbjct: 84 TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV 143
Query: 123 GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRCSA 182
GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRCSA
Sbjct: 144 GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRCSA 203
Query: 183 PACAAAHL 190
PACAAAHL
Sbjct: 204 PACAAAHL 211
>gi|239746252 PREDICTED: hypothetical protein XP_002343716 [Homo
sapiens]
Length = 211
Score = 394 bits (1011), Expect = e-110
Identities = 187/188 (99%), Positives = 188/188 (100%)
Query: 3 SGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP 62
+GRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP
Sbjct: 24 TGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP 83
Query: 63 TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV 122
TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV
Sbjct: 84 TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV 143
Query: 123 GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRCSA 182
GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRCSA
Sbjct: 144 GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRDLHPAPPRCSA 203
Query: 183 PACAAAHL 190
PACAAAHL
Sbjct: 204 PACAAAHL 211
>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 46.6 bits (109), Expect = 1e-05
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 19/192 (9%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPR 61
G+GRP ++ DPR+A +R + +R L P PP+ RA L P
Sbjct: 300 GAGRP-SLGSEKKKEDPRRAQVPPTRESRVKVLRKLAATAPAL--PQPPSTPRATTLPPA 356
Query: 62 PTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQV 121
P +T RS+ RA T P T TA + ++ +T S + + P + + +R + +
Sbjct: 357 PATTVT-RSTSRAVTVAARPMTTTAFPTTQRPWTPSPSHR-PPTTTEVITARRPSVSENL 414
Query: 122 VGGERGG--AERSQLGLQQPLAEAL----------VKEASGRRKSGQRGRGAAQPRRLHR 169
R ER Q + A +L + E S R R R RR H
Sbjct: 415 YPPSRKDQHRERPQTTRRPSKATSLESFTNAPPTTISEPSTRAAGPGRFRDNRMDRREHG 474
Query: 170 HRD--LHPAPPR 179
HRD + P PP+
Sbjct: 475 HRDPNVVPGPPK 486
>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 46.6 bits (109), Expect = 1e-05
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 19/192 (9%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPR 61
G+GRP ++ DPR+A +R + +R L P PP+ RA L P
Sbjct: 300 GAGRP-SLGSEKKKEDPRRAQVPPTRESRVKVLRKLAATAPAL--PQPPSTPRATTLPPA 356
Query: 62 PTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQV 121
P +T RS+ RA T P T TA + ++ +T S + + P + + +R + +
Sbjct: 357 PATTVT-RSTSRAVTVAARPMTTTAFPTTQRPWTPSPSHR-PPTTTEVITARRPSVSENL 414
Query: 122 VGGERGG--AERSQLGLQQPLAEAL----------VKEASGRRKSGQRGRGAAQPRRLHR 169
R ER Q + A +L + E S R R R RR H
Sbjct: 415 YPPSRKDQHRERPQTTRRPSKATSLESFTNAPPTTISEPSTRAAGPGRFRDNRMDRREHG 474
Query: 170 HRD--LHPAPPR 179
HRD + P PP+
Sbjct: 475 HRDPNVVPGPPK 486
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 46.2 bits (108), Expect = 2e-05
Identities = 56/208 (26%), Positives = 71/208 (34%), Gaps = 25/208 (12%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPR 61
GS SR P R GG G R R G G +G APP A P R
Sbjct: 18 GSRPSSAVGEGSRVPGRRLDEGGGVQGRWKNRGRGTYRGAGPGAGSAPPGETPA-PYTRR 76
Query: 62 PTPR-LTGRSSW--------------RACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSA 106
PR T R +W AC++ SP G +E W S
Sbjct: 77 SGPRSRTWRRTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGW-AST 135
Query: 107 WHLGDGQRHAGCAQVVGGER------GGAERSQ-LGLQQPLAEALVKEASGRRKSGQRGR 159
+ G +H G G A +S+ +G +P + S + + R
Sbjct: 136 FLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARR 195
Query: 160 GAAQPRRLHRHRDLHP-APPRCSAPACA 186
PRR RHR APP C PAC+
Sbjct: 196 VFTDPRRHTRHRTRRSVAPPGCFCPACS 223
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 3 SGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPR 61
SG G AR S P P GS T ARR R+ G G + P+PP RR P PR
Sbjct: 29 SGSSSGPARRSSPPPP---PSGSSSRTPARRPRSPSGHRGRRASPSPPRGRRVSPSPPR 84
Score = 28.1 bits (61), Expect = 4.8
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 7 RGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQP 60
R AR R P + S R RR+ P P+PP RR +P P
Sbjct: 51 RTPARRPRSPSGHRGRRASPSPPRGRRVSPSP-PRARRGSPSPPRGRRLFPPGP 103
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 40.8 bits (94), Expect = 7e-04
Identities = 23/49 (46%), Positives = 23/49 (46%)
Query: 7 RGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRA 55
RG A R A G DGG RR A PGG GG SG P RRA
Sbjct: 56 RGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRA 104
Score = 28.1 bits (61), Expect = 4.8
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 24 GSDGGTRARRIRAHPGGEGGLSGPA------PPARRRAYPLQPRPTPRLTGRSSW 72
G G RAR G+ GP PP R+R P P P R G ++W
Sbjct: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPAR--GAAAW 61
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 39.7 bits (91), Expect = 0.002
Identities = 52/199 (26%), Positives = 70/199 (35%), Gaps = 28/199 (14%)
Query: 14 RQPDPRQAAG---GSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRPTPRL-TGR 69
R+ +P + G S G R R G G +G APP A P R PR T R
Sbjct: 214 RELEPHRMKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPGETPA-PYTRRSGPRSRTWR 272
Query: 70 SSW--------------RACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRH 115
+W AC++ SP G +E W S + G +H
Sbjct: 273 RTWCWTGDSAAVGAAAVLACSARLSPADGFGAEEGPLAHLEERSEGW-ASTFLSAPGPQH 331
Query: 116 AGCAQVVGGER------GGAERSQ-LGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLH 168
G G A +S+ +G +P + S + + R PRR
Sbjct: 332 PPTPPACSGAATRREPPGNARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFTDPRRHT 391
Query: 169 RHRDLHP-APPRCSAPACA 186
RHR APP C PAC+
Sbjct: 392 RHRTRRSVAPPGCFCPACS 410
>gi|53832005 calcium channel, voltage-dependent, R type, alpha 1E
subunit [Homo sapiens]
Length = 2270
Score = 38.9 bits (89), Expect = 0.003
Identities = 50/180 (27%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Query: 7 RGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPA----------RRRAY 56
RGT P+ RQ+ S+G ++ + G G LS + P+ RR+
Sbjct: 2062 RGTQADWESPERRQSRSPSEGRSQTPNRQ----GTGSLSESSIPSVSDTSTPRRSRRQLP 2117
Query: 57 PLQPRPTPRLTGRSSWRACTSTC---------SPTTLTAISSGEKCFTSSSTEKWPGSAW 107
P+ P+P P L+ S R S SP T A+ S C T SS P +
Sbjct: 2118 PVPPKPRPLLSYSSLIRHAGSISPPADGSEEGSPLTSQALESNNACLTESSNSPHPQQSQ 2177
Query: 108 HLGDGQRHAGCAQVVGGERGGAERSQLGLQQPLA-EALVKEASGRRKSGQRGRGAAQPRR 166
H QR+ + E A S G ++ L EA V + GR + G+A P R
Sbjct: 2178 H-ASPQRYISEPYLALHEDSHA--SDCGEEETLTFEAAVATSLGRSNT----IGSAPPLR 2230
>gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 37.7 bits (86), Expect = 0.006
Identities = 41/127 (32%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 5 RPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEG-GLSGPAPPARRRAYPLQPRPT 63
R R SR P P + SD + R+R G G G SGP P+ P P P
Sbjct: 62 RQRKIKPDSRSPTPVPPSFASD---QRARVRVCAGANGAGASGPRGPS-----PGSPPPP 113
Query: 64 PRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVVG 123
+ R R C+S C S F W AW L AGC Q G
Sbjct: 114 GLSSSRRRHRHCSSRCCRCRRRRRSLALLLF------PWLRPAWQL------AGC-QAWG 160
Query: 124 GERGGAE 130
GERG E
Sbjct: 161 GERGRGE 167
>gi|169167899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 37.7 bits (86), Expect = 0.006
Identities = 41/127 (32%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 5 RPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEG-GLSGPAPPARRRAYPLQPRPT 63
R R SR P P + SD + R+R G G G SGP P+ P P P
Sbjct: 62 RQRKIKPDSRSPTPVPPSFASD---QRARVRVCAGANGAGASGPRGPS-----PGSPPPP 113
Query: 64 PRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVVG 123
+ R R C+S C S F W AW L AGC Q G
Sbjct: 114 GLSSSRRRHRHCSSRCCRCRRRRRSLALLLF------PWLRPAWQL------AGC-QAWG 160
Query: 124 GERGGAE 130
GERG E
Sbjct: 161 GERGRGE 167
>gi|169167609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 37.7 bits (86), Expect = 0.006
Identities = 41/127 (32%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 5 RPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEG-GLSGPAPPARRRAYPLQPRPT 63
R R SR P P + SD + R+R G G G SGP P+ P P P
Sbjct: 62 RQRKIKPDSRSPTPVPPSFASD---QRARVRVCAGANGAGASGPRGPS-----PGSPPPP 113
Query: 64 PRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVVG 123
+ R R C+S C S F W AW L AGC Q G
Sbjct: 114 GLSSSRRRHRHCSSCCCRCRRRRRSLALLLF------PWLRPAWQL------AGC-QAWG 160
Query: 124 GERGGAE 130
GERG E
Sbjct: 161 GERGRGE 167
>gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 14 RQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPP----------------ARRRAYP 57
R P+P Q GS GG R +R R P G L GPAPP AR R P
Sbjct: 63 RPPEPVQG-WGSGGGWR-KRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARPRVKP 120
Query: 58 LQ-PRPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPG 104
+ PR + W+ C + + L+A+ G + + +W G
Sbjct: 121 GRFPRAPSSVPASDDWKGCPCSAAFGDLSALEEGH--LKAGARGEWEG 166
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.013
Identities = 55/190 (28%), Positives = 65/190 (34%), Gaps = 29/190 (15%)
Query: 10 ARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRPTPRLTGR 69
AR ++ P P A GS GG P GLS PP+ R P PRP P
Sbjct: 115 ARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAG 174
Query: 70 SSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVVGGERGGA 129
+ A GEK + +A LGD R A AQ G
Sbjct: 175 GKGEGGGKESAVLWKGAEGGGEKGNRNM-------AAAPLGDPAREAAQAQT-----GLR 222
Query: 130 ERSQLGL-------QQPLAEALVKEASGRRKSG-----QRGRGAAQPRRLHRHRDLHPAP 177
R L L P A GR + G ++ G A R L R + PAP
Sbjct: 223 RRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRK---PAP 279
Query: 178 PRCSAPACAA 187
C ACAA
Sbjct: 280 --CPRGACAA 287
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 36.6 bits (83), Expect = 0.013
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
Query: 10 ARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRPTPRLTGR 69
A+ + P R+ G++G R AHP ++ PAPP A +P P PR
Sbjct: 145 AQRGKSPACRETGVGAEG-CRVLTAEAHPV----MALPAPPPSPAARQPEPPPMPRAA-- 197
Query: 70 SSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVVGGERGGA 129
S RA T+ + + E+ S + + G A A+VVGGE
Sbjct: 198 RSARAATAARAAAAEREEAREERARGCSEASRTSSDS-----GPSRAPAARVVGGEAAAT 252
Query: 130 ERSQLGLQQPLA-----EALVKEASGRRKSG-QRGRGAAQP 164
++ + PLA ++A+ R +G Q G G P
Sbjct: 253 AAARARPRAPLAAGSPVPVRPQDAAARSAAGMQPGHGRRPP 293
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.013
Identities = 55/190 (28%), Positives = 65/190 (34%), Gaps = 29/190 (15%)
Query: 10 ARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPRPTPRLTGR 69
AR ++ P P A GS GG P GLS PP+ R P PRP P
Sbjct: 115 ARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAG 174
Query: 70 SSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVVGGERGGA 129
+ A GEK + +A LGD R A AQ G
Sbjct: 175 GKGEGGGKESAVLWKGAEGGGEKGNRNM-------AAAPLGDPAREAAQAQT-----GLR 222
Query: 130 ERSQLGL-------QQPLAEALVKEASGRRKSG-----QRGRGAAQPRRLHRHRDLHPAP 177
R L L P A GR + G ++ G A R L R + PAP
Sbjct: 223 RRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRK---PAP 279
Query: 178 PRCSAPACAA 187
C ACAA
Sbjct: 280 --CPRGACAA 287
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.2 bits (82), Expect = 0.017
Identities = 50/165 (30%), Positives = 60/165 (36%), Gaps = 43/165 (26%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHP--------------GGEGGLSG- 46
G G PRG A AA GG A R+ H G EGG G
Sbjct: 163 GLGAPRGGA----------AAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGA 212
Query: 47 -PAPPARRRAYPLQPRP--------TPRLTGRSSWRACTSTCSPTTLTAISS-GEKCFTS 96
P+PP R+ +PRP R TGR++ P SS G TS
Sbjct: 213 RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATS 272
Query: 97 SSTEKWP---GSAWH-LGDGQRHAGCAQVVGGERGGAERSQLGLQ 137
S P G+ H DG+ GCAQ+ R G + GLQ
Sbjct: 273 VSAAARPTRGGARGHRRADGRARGGCAQL----RAGTPSAPGGLQ 313
Score = 29.3 bits (64), Expect = 2.1
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 4 GRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARR-----RAYPL 58
GR RG R P G D R AHP G P P A R + PL
Sbjct: 292 GRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPL 351
Query: 59 -QPRPTPRL 66
QP P P+L
Sbjct: 352 PQPPPPPKL 360
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.2 bits (82), Expect = 0.017
Identities = 50/165 (30%), Positives = 60/165 (36%), Gaps = 43/165 (26%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHP--------------GGEGGLSG- 46
G G PRG A AA GG A R+ H G EGG G
Sbjct: 163 GLGAPRGGA----------AAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGA 212
Query: 47 -PAPPARRRAYPLQPRP--------TPRLTGRSSWRACTSTCSPTTLTAISS-GEKCFTS 96
P+PP R+ +PRP R TGR++ P SS G TS
Sbjct: 213 RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATS 272
Query: 97 SSTEKWP---GSAWH-LGDGQRHAGCAQVVGGERGGAERSQLGLQ 137
S P G+ H DG+ GCAQ+ R G + GLQ
Sbjct: 273 VSAAARPTRGGARGHRRADGRARGGCAQL----RAGTPSAPGGLQ 313
Score = 29.3 bits (64), Expect = 2.1
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 4 GRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARR-----RAYPL 58
GR RG R P G D R AHP G P P A R + PL
Sbjct: 292 GRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPL 351
Query: 59 -QPRPTPRL 66
QP P P+L
Sbjct: 352 PQPPPPPKL 360
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.2 bits (82), Expect = 0.017
Identities = 50/165 (30%), Positives = 60/165 (36%), Gaps = 43/165 (26%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHP--------------GGEGGLSG- 46
G G PRG A AA GG A R+ H G EGG G
Sbjct: 163 GLGAPRGGA----------AAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGA 212
Query: 47 -PAPPARRRAYPLQPRP--------TPRLTGRSSWRACTSTCSPTTLTAISS-GEKCFTS 96
P+PP R+ +PRP R TGR++ P SS G TS
Sbjct: 213 RPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATS 272
Query: 97 SSTEKWP---GSAWH-LGDGQRHAGCAQVVGGERGGAERSQLGLQ 137
S P G+ H DG+ GCAQ+ R G + GLQ
Sbjct: 273 VSAAARPTRGGARGHRRADGRARGGCAQL----RAGTPSAPGGLQ 313
Score = 29.3 bits (64), Expect = 2.1
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 4 GRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARR-----RAYPL 58
GR RG R P G D R AHP G P P A R + PL
Sbjct: 292 GRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPL 351
Query: 59 -QPRPTPRL 66
QP P P+L
Sbjct: 352 PQPPPPPKL 360
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 35.8 bits (81), Expect = 0.023
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 2 GSGRPRGTARTSRQPDPRQAAG--GSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQ 59
G+ PRG A S++ P A G G+ GG + +R R G GG G R+ Q
Sbjct: 478 GAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQ 537
Query: 60 PRPTPRLTGRSSW 72
P R T +W
Sbjct: 538 PDSKRRQTNNQNW 550
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 35.8 bits (81), Expect = 0.023
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 2 GSGRPRGTARTSRQPDPRQAAG--GSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQ 59
G+ PRG A S++ P A G G+ GG + +R R G GG G R+ Q
Sbjct: 513 GAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQ 572
Query: 60 PRPTPRLTGRSSW 72
P R T +W
Sbjct: 573 PDSKRRQTNNQNW 585
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 35.8 bits (81), Expect = 0.023
Identities = 50/178 (28%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPR 61
G+G RG R R+P A DG + + A PG E G G PARR
Sbjct: 144 GTGALRGDFRQCREPARTPQAASRDGDGASPALSA-PGREPGRGGR--PARR-------- 192
Query: 62 PTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQV 121
++ RA +S+ P S G S P W LG R +
Sbjct: 193 --------TTQRAASSSLPPRR----SEGHPDAPHRSPR--PLYRW-LGPPPRRDWMRED 237
Query: 122 VGGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRR-LHRHRDLHPAPP 178
G GG + + L++ +EA +G R G+A+ RR R R L P PP
Sbjct: 238 GVGAGGGPQEPRFPLRR-------REARSAVVAGPRREGSARSRRAARRRRQLQPGPP 288
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 35.8 bits (81), Expect = 0.023
Identities = 50/178 (28%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 2 GSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLSGPAPPARRRAYPLQPR 61
G+G RG R R+P A DG + + A PG E G G PARR
Sbjct: 136 GTGALRGDFRQCREPARTPQAASRDGDGASPALSA-PGREPGRGGR--PARR-------- 184
Query: 62 PTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQV 121
++ RA +S+ P S G S P W LG R +
Sbjct: 185 --------TTQRAASSSLPPRR----SEGHPDAPHRSPR--PLYRW-LGPPPRRDWMRED 229
Query: 122 VGGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRR-LHRHRDLHPAPP 178
G GG + + L++ +EA +G R G+A+ RR R R L P PP
Sbjct: 230 GVGAGGGPQEPRFPLRR-------REARSAVVAGPRREGSARSRRAARRRRQLQPGPP 280
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 35.8 bits (81), Expect = 0.023
Identities = 42/143 (29%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 52 RRRAYPLQPRPTPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPG-SAWHLG 110
+R PL P L RS+WR+ S SP L + +G +ST + P A L
Sbjct: 627 QRGPLPLSPDSPATLLARSAWRSAGSPASP--LVPVRAG----PWASTSRLPAPPARTLH 680
Query: 111 DGQRHAGCAQVV--------GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAA 162
AG +QV GG R G L QP +L + A+G G++G G+
Sbjct: 681 ASLSRAGRSQVSLLGPPPGGGGRRLGPRGRPLSASQP---SLPQRATGDGSPGRKGSGSE 737
Query: 163 Q--PRRLHRHRDLHPAPPRCSAP 183
+ P L PPR P
Sbjct: 738 RLPPSGLLAKPPRTAQPPRPPVP 760
>gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo
sapiens]
Length = 252
Score = 35.4 bits (80), Expect = 0.030
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 5 RPRGTARTSRQPDPRQAAGG----------SDGGTRARRIRAHP----GGEGGL-SGPAP 49
R G AR +R P P G + T A R RA P G+ GL SG
Sbjct: 129 REAGAARAARAPKPPAPGSGQALPADPLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALG 188
Query: 50 PARRRAYPLQPRPTPRLTGRSSWRAC 75
RR +P TPR R W+ C
Sbjct: 189 LGRREKLAARPAATPRRASRPPWQGC 214
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 35.4 bits (80), Expect = 0.030
Identities = 45/202 (22%), Positives = 69/202 (34%), Gaps = 25/202 (12%)
Query: 6 PRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLS------GPAPPA-------- 51
P +A + QP P+ A + G + A GEG L PAPPA
Sbjct: 421 PAASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGL 480
Query: 52 --------RRRAYPLQPRPTPRLTGRSSWRACTSTCSPTTLTAISSG---EKCFTSSSTE 100
+RR Q P+P + A T + SG E +SS T+
Sbjct: 481 DLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQ 540
Query: 101 KWPGSAWHLGDGQRHAGCAQVVGGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRG 160
P + D ++H + G + R + + + S R+ G R
Sbjct: 541 PAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRS 600
Query: 161 AAQPRRLHRHRDLHPAPPRCSA 182
++ +R R R P P S+
Sbjct: 601 RSREKRRRRRRSASPPPATSSS 622
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 35.0 bits (79), Expect = 0.039
Identities = 52/184 (28%), Positives = 67/184 (36%), Gaps = 12/184 (6%)
Query: 4 GRPRGTARTSRQPDPRQAAGGSDGGTR-ARRIRAHPGGEGGLSGPAPPARRRAYPLQPRP 62
G PR R+P PR+ S G R A RA P + L+ P R ++P
Sbjct: 102 GAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSLARCLP--RSVGSCVRPSV 159
Query: 63 TPRLTGRSSWRACTSTCSPTTLTAISSGEKCFTSSSTEKWPGSAWHLGDGQRHAGCAQVV 122
P L R R C C L + S+S P A L G R +
Sbjct: 160 GPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASP---PRLAAPLA-GSRAPSLSPFP 215
Query: 123 GGERGGAERSQLGLQQPLAEALVKEASGRRKSGQRGRGAAQPRRLHRHRD--LHPAPPRC 180
R AERS G PL +L + G G R R + RR+ R +PP
Sbjct: 216 RRCRRRAERSPAGHGLPLPRSL---SRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIP 272
Query: 181 SAPA 184
+ PA
Sbjct: 273 AGPA 276
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 35.0 bits (79), Expect = 0.039
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 25/195 (12%)
Query: 11 RTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLS-----GPAPPARRRAYPLQPRPTPR 65
+ S +P +A+ S + AR+ PG G ++ G PPA+R P + +
Sbjct: 215 KPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPEEESESSE 274
Query: 66 LTGRSSWRACTSTCSPTTLTAISSGEKCF----TSSSTEKWPGS-AWHLGDGQRHAGCAQ 120
S A T S + + EK S+ + PG A G+ A +Q
Sbjct: 275 EGSESEEEAPAGTRSQ-----VKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVASQ 329
Query: 121 VVGG------ERGGAERSQLGLQQPLAEALVK-EASGRRKSGQRGRGAAQPRRLHRHRDL 173
G E E S + P A+AL++ +ASG K+ Q G +A P + +
Sbjct: 330 TKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG--KTSQVGAASA-PAKESPRKGA 386
Query: 174 HPAPPRCSAPACAAA 188
PAPP + PA A A
Sbjct: 387 APAPPGKTGPAVAKA 401
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 35.0 bits (79), Expect = 0.039
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 25/195 (12%)
Query: 11 RTSRQPDPRQAAGGSDGGTRARRIRAHPGGEGGLS-----GPAPPARRRAYPLQPRPTPR 65
+ S +P +A+ S + AR+ PG G ++ G PPA+R P + +
Sbjct: 215 KPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPEEESESSE 274
Query: 66 LTGRSSWRACTSTCSPTTLTAISSGEKCF----TSSSTEKWPGS-AWHLGDGQRHAGCAQ 120
S A T S + + EK S+ + PG A G+ A +Q
Sbjct: 275 EGSESEEEAPAGTRSQ-----VKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVASQ 329
Query: 121 VVGG------ERGGAERSQLGLQQPLAEALVK-EASGRRKSGQRGRGAAQPRRLHRHRDL 173
G E E S + P A+AL++ +ASG K+ Q G +A P + +
Sbjct: 330 TKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASG--KTSQVGAASA-PAKESPRKGA 386
Query: 174 HPAPPRCSAPACAAA 188
PAPP + PA A A
Sbjct: 387 APAPPGKTGPAVAKA 401
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,195,907
Number of Sequences: 37866
Number of extensions: 599397
Number of successful extensions: 4507
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 4179
Number of HSP's gapped (non-prelim): 619
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.