Guide to the Human Genome
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Name: LOC100287250 Sequence: fasta or formatted (300aa) NCBI GI: 239747100
Description:

PREDICTED: hypothetical protein XP_002344493

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         49           4
 C cysteine            3.3         10           1
 D aspartate           4.3         13           1
 E glutamate           7.7         23           2
 F phenylalanine       1.3          4           1
 G glycine            10.0         30           2
 H histidine           2.7          8           1
 I isoleucine          0.7          2           1
 K lysine              3.0          9           1
 L leucine             5.0         15           1
 M methionine          2.3          7           1
 N asparagine          1.0          3           1
 P proline            10.0         30           3
 Q glutamine           3.7         11           1
 R arginine           11.0         33           2
 S serine              7.3         22           2
 T threonine           5.3         16           1
 V valine              4.0         12           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344493 
SAMD1                 0.041   sterile alpha motif domain containing 1 
LOC100131455          0.041   PREDICTED: hypothetical protein 
LOC100131455          0.041   PREDICTED: hypothetical protein 
LOC100131455          0.041   PREDICTED: hypothetical protein 
GPRIN1                0.039   G protein-regulated inducer of neurite outgrowth 1 ...
FAM48B1               0.037   hypothetical protein LOC100130302 
MAZ                   0.037   MYC-associated zinc finger protein isoform 2 
MAZ                   0.037   MYC-associated zinc finger protein isoform 1 
FGF2                  0.035   fibroblast growth factor 2 
LOC100292845          0.035   PREDICTED: hypothetical protein 
LOC100289230          0.035   PREDICTED: hypothetical protein XP_002342600 
FOXD2                 0.035   forkhead box D2 
LOC100127930          0.034   PREDICTED: hypothetical protein 
HCN2                  0.034   hyperpolarization activated cyclic nucleotide-gated...
SETD1A                0.034   SET domain containing 1A 
MARCKS                0.034   myristoylated alanine-rich protein kinase C substra...
DACT3                 0.034   thymus expressed gene 3-like 
LOC100290023          0.032   PREDICTED: hypothetical protein XP_002348147 
KLF14                 0.032   Kruppel-like factor 14 
SRRM2                 0.032   splicing coactivator subunit SRm300 
LOC730060             0.032   PREDICTED: hypothetical protein 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
LOC730060             0.032   PREDICTED: hypothetical protein 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
LOC730060             0.032   PREDICTED: hypothetical protein 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
MLL4                  0.032   myeloid/lymphoid or mixed-lineage leukemia 4 
APC2                  0.032   adenomatosis polyposis coli 2 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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