Guide to the Human Genome
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Name: LOC100292612 Sequence: fasta or formatted (191aa) NCBI GI: 239756603
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         21           2
 C cysteine            2.6          5           2
 D aspartate           3.1          6           2
 E glutamate           3.1          6           2
 F phenylalanine       2.1          4           1
 G glycine            12.0         23           3
 H histidine           1.0          2           1
 I isoleucine          0.0          0           0
 K lysine              3.1          6           1
 L leucine             9.9         19           3
 M methionine          1.0          2           1
 N asparagine          0.5          1           1
 P proline            13.6         26           2
 Q glutamine           1.0          2           1
 R arginine           16.2         31           3
 S serine              7.9         15           2
 T threonine           2.6          5           1
 V valine              5.2         10           1
 W tryptophan          3.7          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132261          0.042   PREDICTED: similar to hCG2023245 
LOC441086             0.039   PREDICTED: hypothetical protein 
LOC441086             0.039   PREDICTED: hypothetical protein 
LOC100292143          0.039   PREDICTED: hypothetical protein 
LOC100292745          0.031   PREDICTED: hypothetical protein 
LOC100290074          0.031   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.031   PREDICTED: hypothetical protein XP_002342693 
WBP11                 0.031   WW domain binding protein 11 
LOC100293176          0.031   PREDICTED: hypothetical protein 
LOC100289054          0.031   PREDICTED: hypothetical protein 
LOC100289054          0.031   PREDICTED: hypothetical protein XP_002343716 
LOC100291828          0.029   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.029   PREDICTED: hypothetical protein XP_002343509 
CPSF6                 0.029   cleavage and polyadenylation specific factor 6, 68 ...
LOC100292591          0.029   PREDICTED: hypothetical protein 
GRIN2C                0.029   N-methyl-D-aspartate receptor subunit 2C precursor [...
LOC643153             0.026   PREDICTED: hypothetical protein 
LOC643153             0.026   PREDICTED: hypothetical protein 
LOC100287920          0.026   PREDICTED: hypothetical protein XP_002344198 
LOC643153             0.026   PREDICTED: hypothetical protein 
RBM15B                0.026   RNA binding motif protein 15B 
ANKRD34A              0.026   ankyrin repeat domain 34 
C17orf96              0.026   hypothetical protein LOC100170841 
MEX3A                 0.026   MEX3A protein 
LOC729991-MEF2B       0.024   myocyte enhancer factor 2B isoform b 
LOC100292934          0.024   PREDICTED: hypothetical protein 
LOC100290359          0.024   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.024   PREDICTED: hypothetical protein XP_002342114 
RAVER1                0.024   RAVER1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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