Guide to the Human Genome
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Name: LOC100289054 Sequence: fasta or formatted (211aa) NCBI GI: 239746252
Description:

PREDICTED: hypothetical protein XP_002343716

Not currently referenced in the text

Other entries for this name:
alt mRNA {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         26           3
 C cysteine            2.8          6           1
 D aspartate           1.9          4           1
 E glutamate           3.8          8           1
 F phenylalanine       0.5          1           1
 G glycine            13.7         29           2
 H histidine           3.3          7           1
 I isoleucine          0.9          2           1
 K lysine              1.9          4           1
 L leucine             7.1         15           1
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline            11.8         25           3
 Q glutamine           4.7         10           2
 R arginine           14.2         30           3
 S serine              8.1         17           3
 T threonine           7.1         15           2
 V valine              2.4          5           2
 W tryptophan          2.4          5           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343716 
LOC100289054          1.000   PREDICTED: hypothetical protein 
LOC100293176          0.874   PREDICTED: hypothetical protein 
LOC728351             0.050   PREDICTED: hypothetical protein 
CCDC80                0.047   steroid-sensitive protein 1 
CCDC80                0.047   steroid-sensitive protein 1 
LOC728351             0.045   PREDICTED: hypothetical protein 
LOC284988             0.043   PREDICTED: hypothetical protein 
LOC100131455          0.040   PREDICTED: hypothetical protein 
LOC100131455          0.040   PREDICTED: hypothetical protein 
LOC100131455          0.038   PREDICTED: hypothetical protein 
ZNF318                0.038   zinc finger protein 318 
RFX5                  0.033   regulatory factor X, 5 
RFX5                  0.033   regulatory factor X, 5 
CACNA1E               0.033   calcium channel, voltage-dependent, R type, alpha 1E...
LOC100291533          0.033   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.033   PREDICTED: hypothetical protein XP_002342946 
LOC100132249          0.031   PREDICTED: hypothetical protein 
LOC643395             0.031   PREDICTED: hypothetical protein 
LOC100129630          0.031   PREDICTED: hypothetical protein 
LOC643355             0.031   PREDICTED: hypothetical protein 
LOC100129630          0.031   PREDICTED: hypothetical protein 
LOC100129630          0.031   PREDICTED: hypothetical protein 
SHANK1                0.031   SH3 and multiple ankyrin repeat domains 1 
SYNJ1                 0.028   synaptojanin 1 isoform a 
SYNJ1                 0.028   synaptojanin 1 isoform b 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC338758             0.028   PREDICTED: hypothetical protein 
HTRA2                 0.028   HtrA serine peptidase 2 isoform 1 preproprotein [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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