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Search of human proteins with 239757195
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757195 PREDICTED: hypothetical protein [Homo sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757195 PREDICTED: hypothetical protein [Homo sapiens] 174 1e-44
gi|239751702 PREDICTED: hypothetical protein XP_002347969 [Homo ... 174 1e-44
gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo ... 174 1e-44
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 37 0.004
gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo sap... 35 0.010
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 34 0.022
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 34 0.022
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 34 0.022
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 34 0.022
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 34 0.022
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 33 0.049
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 33 0.049
gi|169207410 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 33 0.049
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 33 0.064
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 33 0.064
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|51479192 ring finger protein 1 [Homo sapiens] 33 0.064
gi|239756276 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|113205091 BAI1-associated protein 2-like 2 [Homo sapiens] 32 0.083
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 32 0.11
gi|45387951 transmembrane protein 108 [Homo sapiens] 32 0.14
gi|210147493 transmembrane protein 108 [Homo sapiens] 32 0.14
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 31 0.19
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 31 0.24
gi|23510323 nephroretinin [Homo sapiens] 31 0.24
gi|194473700 Src homology 3 domain-containing guanine nucleotide... 31 0.24
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 0.24
>gi|239757195 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 174 bits (442), Expect = 1e-44
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS
Sbjct: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83
VSPGLRGHVGKGGARGCHPGSRL
Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83
>gi|239751702 PREDICTED: hypothetical protein XP_002347969 [Homo
sapiens]
Length = 83
Score = 174 bits (442), Expect = 1e-44
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS
Sbjct: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83
VSPGLRGHVGKGGARGCHPGSRL
Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83
>gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo
sapiens]
Length = 83
Score = 174 bits (442), Expect = 1e-44
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS
Sbjct: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83
VSPGLRGHVGKGGARGCHPGSRL
Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKG-GARGCHPGSR 82
PDP P L T RG+G R GLRG G+ ARG PGSR
Sbjct: 841 PDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPARGRKPGSR 883
>gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 209
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 39 RQPDPAAPPLPTPRGTGLGSRSVSPGL--RGHVGKGGARGCHP 79
R+ AAPP P P GT S +SPGL RG + GAR HP
Sbjct: 144 REGQRAAPP-PRPSGTFAASARLSPGLAGRGSPARPGARASHP 185
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
P P APP PRG G +R+ PG R GARGC S+L
Sbjct: 107 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 146
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
P P APP PRG G +R+ PG R GARGC S+L
Sbjct: 90 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 129
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
P P APP PRG G +R+ PG R GARGC S+L
Sbjct: 98 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 137
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
P P APP PRG G +R+ PG R GARGC S+L
Sbjct: 90 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 129
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
P P APP PRG G +R+ PG R GARGC S+L
Sbjct: 98 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 137
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 29 PIDAPELRGSR-QPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
P A RG+ QP PA PP P G G +PG +G G GARG
Sbjct: 337 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARG 384
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 41 PDPAAPPLPT----PRG----TGLGSRSVSPGLRGHVGKGGARGCHPG 80
P P PP P+ P+G +G R+ PGL+G G G +G PG
Sbjct: 914 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG-EPG 960
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 32 APELRGSR-QPDPAAPP-LPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
AP G R P P PP L P G R SPG G G+ GA G
Sbjct: 1009 APGASGDRGPPGPVGPPGLTGPAGEP--GREGSPGADGPPGRDGAAG 1053
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 29 PIDAPELRGSR-QPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
P A RG+ QP PA PP P G G +PG +G G GARG
Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARG 315
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 41 PDPAAPPLPT----PRG----TGLGSRSVSPGLRGHVGKGGARGCHPG 80
P P PP P+ P+G +G R+ PGL+G G G +G PG
Sbjct: 845 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG-EPG 891
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 32 APELRGSR-QPDPAAPP-LPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
AP G R P P PP L P G R SPG G G+ GA G
Sbjct: 940 APGASGDRGPPGPVGPPGLTGPAGEP--GREGSPGADGPPGRDGAAG 984
>gi|169207410 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77
P+ PE RG R P +PT G+ S + +PG HVG GG+RG
Sbjct: 44 PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99
Query: 78 HP 79
HP
Sbjct: 100 HP 101
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 42 DPAAPPLPTPRGTGL----GSRSVSPGLRGHVGKGGARGC-----HPGSR 82
DP AP LP P G G G R SPGL G +G G RG PGSR
Sbjct: 453 DPGAPGLPGPPGKGKDGEPGLRG-SPGLPGPLGTKGDRGAPGIPGSPGSR 501
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 26 GVQPIDAPELRGSRQPDPAAPPLPTPRGT-GL----GSRSVSPGLRGHVGKGGARG 76
G+ I E + R P P P G GL G+R PG +GH G GA G
Sbjct: 681 GLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARG-PPGFKGHTGDSGAPG 735
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77
P+ PE RG R P +PT G+ S + +PG HVG GG+RG
Sbjct: 44 PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99
Query: 78 HP 79
HP
Sbjct: 100 HP 101
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 33 PELRGS------RQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGA 74
PE RGS R P PP +PRG+ + SPG G G GGA
Sbjct: 114 PERRGSLQDRLGRASRPGCPP--SPRGSRQERGANSPGRSGARGCGGA 159
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77
P+ PE RG R P +PT G+ S + +PG HVG GG+RG
Sbjct: 44 PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99
Query: 78 HP 79
HP
Sbjct: 100 HP 101
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 33 PELRGS------RQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGA 74
PE RGS R P PP +PRG+ + SPG G G GGA
Sbjct: 114 PERRGSLQDRLGRASRPGCPP--SPRGSRQERGANSPGRSGARGCGGA 159
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 35 LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76
LR SR P PA PLP TP GT G S + P RG G ARG
Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 35 LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76
LR SR P PA PLP TP GT G S + P RG G ARG
Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 35 LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76
LR SR P PA PLP TP GT G S + P RG G ARG
Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 31 DAPELRGSRQPDPAAPPLPT-PRGTGLGSRSVSPGLRGHVGKGGARG 76
D ++ PD A P P PRG G G SV G G G GG G
Sbjct: 182 DGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAG 228
>gi|239756276 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 32.3 bits (72), Expect = 0.083
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 3 SRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVS 62
S AA W +R +AC +G+QP DAP L G P P P G+R +
Sbjct: 67 SSGAARHAPW-LRPAASYACPGLGLQPRDAPRLLG---------PAPLPGQPASGARGTA 116
Query: 63 PGLRGH 68
R H
Sbjct: 117 QPSRRH 122
>gi|113205091 BAI1-associated protein 2-like 2 [Homo sapiens]
Length = 529
Score = 32.3 bits (72), Expect = 0.083
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 38 SRQPDPAAPPLPTPRGTGLGSRSVSPGLR 66
SR P PA PPLP+ R + +GS +V+ ++
Sbjct: 461 SRAPSPAPPPLPSSRRSSMGSTAVATDVK 489
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 29 PIDAPELRGSRQPDPAAPP-LPTP------RGTGLGSRSVSPGLRGHVGKGGARG 76
P+ AP L+G P P LP P RG G PG+RG G G RG
Sbjct: 628 PVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRG 682
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 28 QPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHV-GKGGARGCHPGS 81
+P AP +R+P PP + +G G SR V P GH K G RG +P S
Sbjct: 152 RPTTAPPRTTTRRPP--RPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSS 204
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 28 QPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHV-GKGGARGCHPGS 81
+P AP +R+P PP + +G G SR V P GH K G RG +P S
Sbjct: 152 RPTTAPPRTTTRRPP--RPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSS 204
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 38 SRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
S P P PPLP P T R ++P R HVG G G
Sbjct: 526 SGSPPPDGPPLPLP--TVAPERWITPAQREHVGMKGQAG 562
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/55 (34%), Positives = 22/55 (40%)
Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
P AP S P +PP P R S PGL +G G A PG+ L
Sbjct: 839 PPPAPYYFDSGPPPAFSPPPPPGRAYDTVRSSFKPGLEARLGAGAAGLYEPGAAL 893
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 38 SRQPDPAAPPLPTPRGTGLGSRSVSPG 64
+R P P APP P PRG S PG
Sbjct: 463 ARFPAPPAPPAPPPRGPKRKLYSAVPG 489
>gi|23510323 nephroretinin [Homo sapiens]
Length = 1426
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 23 VDVGVQPIDAP--ELRGSRQP--DPAAPPLPTPRGTGLGSRS-VSPGL 65
+D +P+ P E R SR+P P++PP P PR S V PGL
Sbjct: 455 LDAPTEPVSGPKVERRPSRKPPTSPSSPPAPVPRVLAAPQNSPVGPGL 502
>gi|194473700 Src homology 3 domain-containing guanine nucleotide
exchange factor [Homo sapiens]
Length = 871
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 29 PIDAPELRGSRQPDPAAP-------------PLPTPRGTGLGSRSVSPG---LRGHVGKG 72
P P LR R P+ AP P+P+P GL + + SPG G K
Sbjct: 138 PPPPPVLRPPRTPNAPAPCTPEEDLTGLTASPVPSPTANGLAANNDSPGSGSQSGRKAKD 197
Query: 73 GARGCHPG 80
RG PG
Sbjct: 198 PERGLFPG 205
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 26 GVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
G P P LRGS P P P GL PG++G G+ G G
Sbjct: 673 GTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAG 723
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,750
Number of Sequences: 37866
Number of extensions: 260282
Number of successful extensions: 2974
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 606
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.