Guide to the Human Genome
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Name: LOC100290680 Sequence: fasta or formatted (83aa) NCBI GI: 239751702
Description:

PREDICTED: hypothetical protein XP_002347969

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6          8           2
 C cysteine            2.4          2           1
 D aspartate           3.6          3           1
 E glutamate           2.4          2           1
 F phenylalanine       2.4          2           1
 G glycine            14.5         12           2
 H histidine           2.4          2           1
 I isoleucine          2.4          2           1
 K lysine              2.4          2           1
 L leucine             7.2          6           1
 M methionine          2.4          2           1
 N asparagine          0.0          0           0
 P proline            12.0         10           2
 Q glutamine           2.4          2           1
 R arginine           10.8          9           1
 S serine              9.6          8           1
 T threonine           4.8          4           1
 V valine              7.2          6           1
 W tryptophan          1.2          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347969 
LOC100292564          1.000   PREDICTED: hypothetical protein 
LOC100288184          1.000   PREDICTED: hypothetical protein XP_002343662 
MBD6                  0.081   methyl-CpG binding domain protein 6 
LOC100292183          0.067   PREDICTED: hypothetical protein isoform 1 
ARTN                  0.060   neurotrophic factor artemin isoform 2 
ARTN                  0.060   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.060   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.060   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.060   neurotrophic factor artemin isoform 3 precursor [Ho...
COL2A1                0.054   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.054   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC400236             0.054   PREDICTED: hypothetical protein 
LOC100293055          0.054   PREDICTED: similar to COL22A1 protein 
LOC400236             0.054   PREDICTED: hypothetical protein 
LOC400236             0.054   PREDICTED: hypothetical protein 
LOC100291071          0.054   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.054   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.054   PREDICTED: hypothetical protein 
RING1                 0.054   ring finger protein 1 
LOC100292197          0.047   PREDICTED: hypothetical protein 
BAIAP2L2              0.047   BAI1-associated protein 2-like 2 
COL28A1               0.047   collagen, type XXVIII precursor 
TMEM108               0.047   transmembrane protein 108 
TMEM108               0.047   transmembrane protein 108 
COL15A1               0.040   alpha 1 type XV collagen precursor 
SHANK3                0.040   SH3 and multiple ankyrin repeat domains 3 
NPHP4                 0.040   nephroretinin 
SGEF                  0.040   Src homology 3 domain-containing guanine nucleotide...
COL24A1               0.040   collagen, type XXIV, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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