Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292197 Sequence: fasta or formatted (141aa) NCBI GI: 239756276
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         22           2
 C cysteine            2.1          3           1
 D aspartate           1.4          2           1
 E glutamate           1.4          2           2
 F phenylalanine       2.8          4           1
 G glycine             9.2         13           2
 H histidine           2.8          4           1
 I isoleucine          0.0          0           0
 K lysine              2.1          3           2
 L leucine             8.5         12           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           2
 P proline            11.3         16           1
 Q glutamine           4.3          6           1
 R arginine           12.1         17           2
 S serine             14.2         20           2
 T threonine           5.0          7           4
 V valine              1.4          2           1
 W tryptophan          1.4          2           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
CITED4                0.049   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
LOC100131251          0.042   PREDICTED: hypothetical protein 
LOC100131251          0.042   PREDICTED: hypothetical protein 
LOC100130360          0.038   PREDICTED: hypothetical protein 
LOC100133305          0.038   PREDICTED: hypothetical protein 
LOC100133305          0.038   PREDICTED: hypothetical protein 
LOC100291076          0.034   PREDICTED: hypothetical protein XP_002347846 
LOC100287104          0.034   PREDICTED: hypothetical protein XP_002343630 
ACIN1                 0.030   apoptotic chromatin condensation inducer 1 
LOC100289284          0.030   PREDICTED: hypothetical protein XP_002342335 
LOC100294335          0.030   PREDICTED: similar to c114 SLIT-like testicular pro...
LOC100294335          0.030   PREDICTED: similar to c114 SLIT-like testicular pro...
LRRC37A2              0.030   c114 SLIT-like testicular protein 
LRRC37A               0.030   leucine rich repeat containing 37A 
LOC100289126          0.030   PREDICTED: hypothetical protein XP_002343381 
HIVEP3                0.030   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.030   human immunodeficiency virus type I enhancer bindin...
DYRK1B                0.026   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.026   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.026   dual-specificity tyrosine-(Y)-phosphorylation regulat...
LOC100292564          0.026   PREDICTED: hypothetical protein 
LOC100291624          0.026   PREDICTED: hypothetical protein XP_002345876 
LOC100293818          0.026   PREDICTED: hypothetical protein 
LOC100290680          0.026   PREDICTED: hypothetical protein XP_002347969 
LOC100289712          0.026   PREDICTED: hypothetical protein XP_002346761 
LOC100288184          0.026   PREDICTED: hypothetical protein XP_002343662 
LOC100287455          0.026   PREDICTED: hypothetical protein XP_002342583 
DMRTB1                0.026   DMRT-like family B with proline-rich C-terminal, 1 [...
HEY1                  0.026   hairy/enhancer-of-split related with YRPW motif 1 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press