Guide to the Human Genome
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Name: LOC100292463 Sequence: fasta or formatted (270aa) NCBI GI: 239757187
Description:

PREDICTED: similar to growth differentiation factor 15

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         27           2
 C cysteine            3.7         10           2
 D aspartate           5.6         15           2
 E glutamate           2.2          6           1
 F phenylalanine       1.1          3           1
 G glycine             6.3         17           2
 H histidine           4.4         12           1
 I isoleucine          2.2          6           1
 K lysine              1.9          5           1
 L leucine            12.6         34           2
 M methionine          1.5          4           1
 N asparagine          1.5          4           1
 P proline             9.3         25           3
 Q glutamine           4.1         11           1
 R arginine           11.1         30           3
 S serine              8.5         23           3
 T threonine           5.2         14           1
 V valine              5.9         16           2
 W tryptophan          2.2          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to growth differentiation factor... 
GDF15                 0.791   growth differentiation factor 15 
GDF1                  0.102   growth differentiation factor 1 
BMP6                  0.102   bone morphogenetic protein 6 preproprotein 
BMP5                  0.097   bone morphogenetic protein 5 preproprotein 
BMP7                  0.093   bone morphogenetic protein 7 precursor 
GDF7                  0.093   growth differentiation factor 7 preproprotein 
GDF6                  0.091   growth differentiation factor 6 precursor 
BMP8A                 0.086   bone morphogenetic protein 8A 
BMP8B                 0.086   bone morphogenetic protein 8B preproprotein 
INHBE                 0.084   activin beta E 
GDF9                  0.082   growth differentiation factor 9 precursor 
GDF2                  0.082   growth differentiation factor 2 
GDF5                  0.080   growth differentiation factor 5 preproprotein 
NODAL                 0.078   nodal precursor 
GDF3                  0.071   growth differentiation factor 3 precursor 
TGFB2                 0.069   transforming growth factor, beta 2 isoform 1 
TGFB2                 0.069   transforming growth factor, beta 2 isoform 2 
BMP15                 0.067   bone morphogenetic protein 15 precursor 
BMP4                  0.065   bone morphogenetic protein 4 preproprotein 
BMP4                  0.065   bone morphogenetic protein 4 preproprotein 
BMP4                  0.065   bone morphogenetic protein 4 preproprotein 
TGFB3                 0.065   transforming growth factor, beta 3 
BMP3                  0.063   bone morphogenetic protein 3 preproprotein 
GDF10                 0.061   growth differentiation factor 10 precursor 
TGFB1                 0.061   transforming growth factor, beta 1 
INHBC                 0.061   inhibin beta C chain preproprotein 
BMP2                  0.058   bone morphogenetic protein 2 preproprotein 
INHBA                 0.054   inhibin beta A precursor 
GDF11                 0.052   growth differentiation factor 11 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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