Guide to the Human Genome
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Name: GDF10 Sequence: fasta or formatted (478aa) NCBI GI: 4826740
Description:

growth differentiation factor 10 precursor

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         53           3
 C cysteine            1.7          8           2
 D aspartate           5.9         28           1
 E glutamate           4.0         19           2
 F phenylalanine       3.3         16           2
 G glycine             5.9         28           3
 H histidine           2.5         12           1
 I isoleucine          2.9         14           2
 K lysine              4.0         19           2
 L leucine            10.0         48           6
 M methionine          2.3         11           1
 N asparagine          3.1         15           2
 P proline            10.9         52           3
 Q glutamine           4.6         22           1
 R arginine            9.2         44           2
 S serine              5.9         28           1
 T threonine           2.9         14           1
 V valine              5.9         28           2
 W tryptophan          1.5          7           1
 Y tyrosine            2.5         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth differentiation factor 10 precursor 
BMP3                  0.331   bone morphogenetic protein 3 preproprotein 
BMP2                  0.092   bone morphogenetic protein 2 preproprotein 
BMP4                  0.091   bone morphogenetic protein 4 preproprotein 
BMP4                  0.091   bone morphogenetic protein 4 preproprotein 
BMP4                  0.091   bone morphogenetic protein 4 preproprotein 
BMP7                  0.091   bone morphogenetic protein 7 precursor 
BMP8B                 0.089   bone morphogenetic protein 8B preproprotein 
GDF6                  0.089   growth differentiation factor 6 precursor 
BMP8A                 0.088   bone morphogenetic protein 8A 
GDF5                  0.088   growth differentiation factor 5 preproprotein 
BMP5                  0.087   bone morphogenetic protein 5 preproprotein 
BMP6                  0.087   bone morphogenetic protein 6 preproprotein 
GDF7                  0.086   growth differentiation factor 7 preproprotein 
GDF3                  0.077   growth differentiation factor 3 precursor 
GDF1                  0.070   growth differentiation factor 1 
GDF2                  0.070   growth differentiation factor 2 
BMP10                 0.067   bone morphogenetic protein 10 preproprotein 
INHBB                 0.062   inhibin beta B subunit preproprotein 
NODAL                 0.062   nodal precursor 
BMP15                 0.055   bone morphogenetic protein 15 precursor 
INHBA                 0.054   inhibin beta A precursor 
INHBE                 0.052   activin beta E 
GDF11                 0.050   growth differentiation factor 11 precursor 
MSTN                  0.048   myostatin 
INHBC                 0.047   inhibin beta C chain preproprotein 
GDF9                  0.040   growth differentiation factor 9 precursor 
GDF15                 0.034   growth differentiation factor 15 
LOC100292463          0.034   PREDICTED: similar to growth differentiation factor...
INHA                  0.031   inhibin alpha subunit precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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