Guide to the Human Genome
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Name: GDF9 Sequence: fasta or formatted (454aa) NCBI GI: 4885261
Description:

growth differentiation factor 9 precursor

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         28           2
 C cysteine            2.9         13           2
 D aspartate           3.5         16           1
 E glutamate           5.1         23           2
 F phenylalanine       4.2         19           1
 G glycine             5.1         23           2
 H histidine           3.7         17           2
 I isoleucine          4.2         19           2
 K lysine              5.7         26           2
 L leucine            10.6         48           2
 M methionine          2.0          9           1
 N asparagine          4.2         19           2
 P proline             6.6         30           1
 Q glutamine           4.2         19           1
 R arginine            6.2         28           2
 S serine             11.0         50           3
 T threonine           4.2         19           2
 V valine              4.8         22           1
 W tryptophan          1.5          7           1
 Y tyrosine            4.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth differentiation factor 9 precursor 
BMP15                 0.152   bone morphogenetic protein 15 precursor 
BMP6                  0.069   bone morphogenetic protein 6 preproprotein 
BMP2                  0.067   bone morphogenetic protein 2 preproprotein 
BMP4                  0.066   bone morphogenetic protein 4 preproprotein 
BMP4                  0.066   bone morphogenetic protein 4 preproprotein 
BMP4                  0.066   bone morphogenetic protein 4 preproprotein 
GDF7                  0.065   growth differentiation factor 7 preproprotein 
BMP7                  0.065   bone morphogenetic protein 7 precursor 
BMP5                  0.065   bone morphogenetic protein 5 preproprotein 
GDF6                  0.064   growth differentiation factor 6 precursor 
BMP3                  0.062   bone morphogenetic protein 3 preproprotein 
GDF5                  0.060   growth differentiation factor 5 preproprotein 
NODAL                 0.058   nodal precursor 
GDF3                  0.058   growth differentiation factor 3 precursor 
GDF1                  0.058   growth differentiation factor 1 
GDF2                  0.057   growth differentiation factor 2 
BMP10                 0.055   bone morphogenetic protein 10 preproprotein 
BMP8B                 0.055   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.054   bone morphogenetic protein 8A 
GDF15                 0.048   growth differentiation factor 15 
LOC100292463          0.048   PREDICTED: similar to growth differentiation factor...
INHBA                 0.047   inhibin beta A precursor 
INHBE                 0.044   activin beta E 
GDF10                 0.042   growth differentiation factor 10 precursor 
INHBB                 0.039   inhibin beta B subunit preproprotein 
INHBC                 0.036   inhibin beta C chain preproprotein 
MSTN                  0.035   myostatin 
GDF11                 0.035   growth differentiation factor 11 precursor 
INHA                  0.023   inhibin alpha subunit precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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