Guide to the Human Genome
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Name: GDF3 Sequence: fasta or formatted (364aa) NCBI GI: 10190670
Description:

growth differentiation factor 3 precursor

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         23           3
 C cysteine            3.3         12           1
 D aspartate           5.2         19           1
 E glutamate           4.1         15           1
 F phenylalanine       6.3         23           2
 G glycine             5.2         19           1
 H histidine           2.7         10           1
 I isoleucine          4.1         15           2
 K lysine              5.5         20           2
 L leucine            14.0         51           2
 M methionine          1.9          7           1
 N asparagine          4.9         18           2
 P proline             7.1         26           1
 Q glutamine           5.8         21           1
 R arginine            4.7         17           2
 S serine              5.5         20           2
 T threonine           2.5          9           2
 V valine              6.3         23           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.0         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth differentiation factor 3 precursor 
GDF1                  0.229   growth differentiation factor 1 
BMP2                  0.178   bone morphogenetic protein 2 preproprotein 
BMP4                  0.171   bone morphogenetic protein 4 preproprotein 
BMP4                  0.171   bone morphogenetic protein 4 preproprotein 
BMP4                  0.171   bone morphogenetic protein 4 preproprotein 
BMP6                  0.158   bone morphogenetic protein 6 preproprotein 
BMP7                  0.141   bone morphogenetic protein 7 precursor 
BMP5                  0.138   bone morphogenetic protein 5 preproprotein 
BMP8B                 0.137   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.137   bone morphogenetic protein 8A 
GDF5                  0.129   growth differentiation factor 5 preproprotein 
GDF6                  0.119   growth differentiation factor 6 precursor 
INHBA                 0.115   inhibin beta A precursor 
GDF7                  0.110   growth differentiation factor 7 preproprotein 
BMP3                  0.107   bone morphogenetic protein 3 preproprotein 
INHBB                 0.103   inhibin beta B subunit preproprotein 
GDF10                 0.101   growth differentiation factor 10 precursor 
GDF2                  0.097   growth differentiation factor 2 
BMP10                 0.096   bone morphogenetic protein 10 preproprotein 
NODAL                 0.096   nodal precursor 
BMP15                 0.092   bone morphogenetic protein 15 precursor 
INHBE                 0.088   activin beta E 
INHBC                 0.084   inhibin beta C chain preproprotein 
MSTN                  0.082   myostatin 
GDF11                 0.074   growth differentiation factor 11 precursor 
GDF9                  0.073   growth differentiation factor 9 precursor 
TGFB3                 0.063   transforming growth factor, beta 3 
TGFB1                 0.052   transforming growth factor, beta 1 
GDF15                 0.052   growth differentiation factor 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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