Guide to the Human Genome
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Name: TGFB3 Sequence: fasta or formatted (412aa) NCBI GI: 4507465
Description:

transforming growth factor, beta 3

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         16           1
 C cysteine            3.4         14           2
 D aspartate           4.1         17           2
 E glutamate           8.0         33           2
 F phenylalanine       3.4         14           1
 G glycine             5.6         23           2
 H histidine           4.1         17           2
 I isoleucine          4.6         19           1
 K lysine              6.1         25           3
 L leucine            10.9         45           2
 M methionine          2.2          9           2
 N asparagine          5.6         23           1
 P proline             5.8         24           2
 Q glutamine           3.6         15           1
 R arginine            7.0         29           2
 S serine              5.6         23           2
 T threonine           5.8         24           2
 V valine              6.1         25           2
 W tryptophan          1.0          4           1
 Y tyrosine            3.2         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transforming growth factor, beta 3 
TGFB2                 0.524   transforming growth factor, beta 2 isoform 2 
TGFB2                 0.512   transforming growth factor, beta 2 isoform 1 
TGFB1                 0.352   transforming growth factor, beta 1 
MSTN                  0.111   myostatin 
INHBA                 0.097   inhibin beta A precursor 
BMP7                  0.093   bone morphogenetic protein 7 precursor 
BMP6                  0.093   bone morphogenetic protein 6 preproprotein 
GDF11                 0.089   growth differentiation factor 11 precursor 
BMP4                  0.087   bone morphogenetic protein 4 preproprotein 
BMP4                  0.087   bone morphogenetic protein 4 preproprotein 
BMP4                  0.087   bone morphogenetic protein 4 preproprotein 
BMP2                  0.083   bone morphogenetic protein 2 preproprotein 
BMP5                  0.072   bone morphogenetic protein 5 preproprotein 
INHBE                 0.071   activin beta E 
BMP8B                 0.070   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.070   bone morphogenetic protein 8A 
BMP10                 0.069   bone morphogenetic protein 10 preproprotein 
GDF6                  0.059   growth differentiation factor 6 precursor 
GDF7                  0.056   growth differentiation factor 7 preproprotein 
GDF5                  0.056   growth differentiation factor 5 preproprotein 
INHBB                 0.056   inhibin beta B subunit preproprotein 
GDF3                  0.055   growth differentiation factor 3 precursor 
INHBC                 0.054   inhibin beta C chain preproprotein 
GDF1                  0.052   growth differentiation factor 1 
BMP3                  0.042   bone morphogenetic protein 3 preproprotein 
GDF15                 0.042   growth differentiation factor 15 
LOC100292463          0.042   PREDICTED: similar to growth differentiation factor...
NODAL                 0.034   nodal precursor 
BMP15                 0.034   bone morphogenetic protein 15 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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