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Search of human proteins with 239756961
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756961 PREDICTED: hypothetical protein [Homo sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756961 PREDICTED: hypothetical protein [Homo sapiens] 230 2e-61
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ... 213 3e-56
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ... 161 1e-40
gi|239756227 PREDICTED: hypothetical protein [Homo sapiens] 93 4e-20
gi|239752641 PREDICTED: hypothetical protein [Homo sapiens] 93 4e-20
gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo ... 93 4e-20
gi|7706501 WW domain binding protein 11 [Homo sapiens] 39 7e-04
gi|55750053 atrophin-1 [Homo sapiens] 36 0.006
gi|55750041 atrophin-1 [Homo sapiens] 36 0.006
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 36 0.007
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 36 0.007
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 33 0.037
gi|150417989 cyclin K isoform 1 [Homo sapiens] 33 0.037
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 33 0.037
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 33 0.048
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|211904142 DAZ associated protein 2 isoform d [Homo sapiens] 32 0.082
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 32 0.11
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 32 0.11
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 32 0.11
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 32 0.11
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 32 0.14
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 32 0.14
gi|110832843 TBP-associated factor 4 [Homo sapiens] 31 0.18
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 31 0.24
gi|7661886 DAZ associated protein 2 isoform a [Homo sapiens] 31 0.24
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens] 31 0.24
>gi|239756961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 230 bits (586), Expect = 2e-61
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC
Sbjct: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
Query: 61 SGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
SGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA
Sbjct: 61 SGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
sapiens]
Length = 138
Score = 213 bits (542), Expect = 3e-56
Identities = 105/138 (76%), Positives = 105/138 (76%), Gaps = 33/138 (23%)
Query: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC
Sbjct: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
Query: 61 S---------------------------------GHADGNIPAGPGLCSPQLLLPGGQLF 87
S GHADGNIPAGPGLCSPQLLLPGGQLF
Sbjct: 61 SREGEGRKGEALGRQGPLRSSSLLPPLPTWPGREGHADGNIPAGPGLCSPQLLLPGGQLF 120
Query: 88 WAPEVLRSPFPGPGTPSA 105
WAPEVLRSPFPGPGTPSA
Sbjct: 121 WAPEVLRSPFPGPGTPSA 138
>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
sapiens]
Length = 80
Score = 161 bits (407), Expect = 1e-40
Identities = 80/105 (76%), Positives = 80/105 (76%), Gaps = 25/105 (23%)
Query: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGAT
Sbjct: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGAT------------------------ 36
Query: 61 SGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA
Sbjct: 37 -GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 80
>gi|239756227 PREDICTED: hypothetical protein [Homo sapiens]
Length = 50
Score = 93.2 bits (230), Expect = 4e-20
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 62 GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 7 GHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
>gi|239752641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 50
Score = 93.2 bits (230), Expect = 4e-20
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 62 GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 7 GHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
>gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo
sapiens]
Length = 50
Score = 93.2 bits (230), Expect = 4e-20
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 62 GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 7 GHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 39.3 bits (90), Expect = 7e-04
Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCS-- 76
P+PGP +GP APP PP P G PG P L P PGL
Sbjct: 406 PMPGPPPLGPPPAPP----LRPPGPPTGLPPGPPPGAPPFL-------RPPGMPGLRGPL 454
Query: 77 PQLLLPGGQLFWAPEVLRSPFPGPGTP 103
P+LL PG P R P P PG P
Sbjct: 455 PRLLPPG------PPPGRPPGPPPGPP 475
Score = 34.7 bits (78), Expect = 0.016
Identities = 32/93 (34%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 20 VPGPISVGPQAAPPGATVTHPPTKPLICSGGFIP-----GTRPRLCSGHADGNIPAGPGL 74
+PG P+ PPG PP P G P G PRL G P PG+
Sbjct: 447 MPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGM 506
Query: 75 CSPQLLLPGGQLFWAPEVL--RSPFPGPGTPSA 105
P L+ P G AP L +P P PG SA
Sbjct: 507 MRPPLVPPLGP---APPGLFPPAPLPNPGVLSA 536
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 16 KHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGL 74
+H P PISV A GA T PPT P+ GG +P P H N+P P L
Sbjct: 252 QHPPPTTPISVSSSGAS-GAPPTKPPTTPV--GGGNLPSAPPPANFPHVTPNLPPPPAL 307
Score = 34.7 bits (78), Expect = 0.016
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 21 PGPISVGPQAAPPGA--TVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSP- 77
PGP G +A PGA T T P KP G P R G+ + PAGPG P
Sbjct: 634 PGPPPYGKRAPSPGAYKTATPPGYKP-----GSPPSFRTGTPPGYRGTSPPAGPGTFKPG 688
Query: 78 -QLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
+ PG P L S P P P++
Sbjct: 689 SPTVGPGPLPPAGPSGLPSLPPPPAAPAS 717
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 16 KHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGL 74
+H P PISV A GA T PPT P+ GG +P P H N+P P L
Sbjct: 252 QHPPPTTPISVSSSGAS-GAPPTKPPTTPV--GGGNLPSAPPPANFPHVTPNLPPPPAL 307
Score = 34.7 bits (78), Expect = 0.016
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 21 PGPISVGPQAAPPGA--TVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSP- 77
PGP G +A PGA T T P KP G P R G+ + PAGPG P
Sbjct: 634 PGPPPYGKRAPSPGAYKTATPPGYKP-----GSPPSFRTGTPPGYRGTSPPAGPGTFKPG 688
Query: 78 -QLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
+ PG P L S P P P++
Sbjct: 689 SPTVGPGPLPPAGPSGLPSLPPPPAAPAS 717
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 35.8 bits (81), Expect = 0.007
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 20 VPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQL 79
+PG ++ P PG+ PP PL S G P P +P G+ P
Sbjct: 660 LPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPP----------LPGEAGMPPPPP 709
Query: 80 LLPGGQLFWAPEVLRSPFP-GPGTP 103
LPGG P PFP GPG P
Sbjct: 710 PLPGGPGIPPP----PPFPGGPGIP 730
Score = 33.9 bits (76), Expect = 0.028
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQ 78
P+PG + + + PG T PP P + IP P +P G G+ SP
Sbjct: 611 PLPGGVCISSPPSLPGGTAISPP--PPLSGDATIPPPPP----------LPEGVGIPSPS 658
Query: 79 LLLPGGQLFWAPEVL----RSPFPGPGTPSA 105
LPGG P L R P P P P +
Sbjct: 659 -SLPGGTAIPPPPPLPGSARIPPPPPPLPGS 688
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 19 PVPGPISVGPQAAP-PGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSP 77
P+PG + P P PG+ PP PL G P P +P GPG+ P
Sbjct: 671 PLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPP----------LPGGPGI-PP 719
Query: 78 QLLLPGGQLFWAPEVLRSPFPGPGTP 103
PGG + P PG G P
Sbjct: 720 PPPFPGG------PGIPPPPPGMGMP 739
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 35.8 bits (81), Expect = 0.007
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 20 VPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQL 79
+PG ++ P PG+ PP PL S G P P +P G+ P
Sbjct: 669 LPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPP----------LPGEAGMPPPPP 718
Query: 80 LLPGGQLFWAPEVLRSPFP-GPGTP 103
LPGG P PFP GPG P
Sbjct: 719 PLPGGPGIPPP----PPFPGGPGIP 739
Score = 33.9 bits (76), Expect = 0.028
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQ 78
P+PG + + + PG T PP P + IP P +P G G+ SP
Sbjct: 620 PLPGGVCISSPPSLPGGTAISPP--PPLSGDATIPPPPP----------LPEGVGIPSPS 667
Query: 79 LLLPGGQLFWAPEVL----RSPFPGPGTPSA 105
LPGG P L R P P P P +
Sbjct: 668 -SLPGGTAIPPPPPLPGSARIPPPPPPLPGS 697
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 19 PVPGPISVGPQAAP-PGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSP 77
P+PG + P P PG+ PP PL G P P +P GPG+ P
Sbjct: 680 PLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPP----------LPGGPGI-PP 728
Query: 78 QLLLPGGQLFWAPEVLRSPFPGPGTP 103
PGG + P PG G P
Sbjct: 729 PPPFPGG------PGIPPPPPGMGMP 748
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 33.5 bits (75), Expect = 0.037
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 27/113 (23%)
Query: 18 LPVPGPISVGP-QAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHAD----------- 65
LP P P GP A PP V PP + +G P R ++ G
Sbjct: 188 LPPPPPRRKGPLPAGPPPEDVPGPPKRKEREAGNEPPTPRKKVKGGRERHLKKVGGDACL 247
Query: 66 --GNIPAGPGLCSPQLLLPGGQLFWA------PEVLRSPFP------GPGTPS 104
G+ P GPGL P++L P Q F + PE P P GP PS
Sbjct: 248 LRGSDPGGPGLLPPRVLNP-SQAFSSCHPGLPPENWEKPKPPLASAEGPAVPS 299
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 33.5 bits (75), Expect = 0.037
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHA-DGNIPAGPGL--- 74
PVP P + P A P T +PP P P PRL HA + P G GL
Sbjct: 486 PVPPPPASFPPPAIPPPTPGYPPPPPTYNPN--FPPPPPRLPPTHAVPPHPPPGLGLPPA 543
Query: 75 -CSPQLLLPGGQLFWAPEVLRSPFPGPGTP 103
P + PGGQ P V P P PG P
Sbjct: 544 SYPPPAVPPGGQ----PPV-PPPIPPPGMP 568
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 33.5 bits (75), Expect = 0.037
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQ 78
P+PGPISV P P ++ P + P + G IPG P SG G IP GP + P
Sbjct: 194 PIPGPISV-PIPGPIPGPISGPISGP---NPGPIPGPIPGPISGPNPGPIP-GP-ISGPN 247
Query: 79 LLLPGGQLFWAPEVLRSPFPGP 100
P ++ P PGP
Sbjct: 248 -----------PGLIPGPIPGP 258
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 33.1 bits (74), Expect = 0.048
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 4 GLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGH 63
G H QR +++HLP + PQ P ++ P +C G F P +P + S H
Sbjct: 630 GFRFHRQRMIISRHLPSVSSLPFHPQLHPQQMIISR--HLPSVCGGRFHP--QPMIISRH 685
Query: 64 --ADGNIPAGPGLCSPQLLLP-------GGQLFWAPEVLRSPFP 98
+ ++P P L Q+++ GG+ P ++ P
Sbjct: 686 LPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQPMIISRHLP 729
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 32.7 bits (73), Expect = 0.063
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 3 PGLGVHLQRKHVTKHL-------PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGT 55
P +G L R+H +H P+P P + P+ PP +G P
Sbjct: 157 PSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSAS-----PPRLAAPLAGSRAPSL 211
Query: 56 RP--RLCSGHADGNIPAGPGLCSPQLLLPGGQLFWA 89
P R C A+ + PAG GL P+ L GG++ A
Sbjct: 212 SPFPRRCRRRAERS-PAGHGLPLPRSLSRGGEVVGA 246
>gi|211904142 DAZ associated protein 2 isoform d [Homo sapiens]
Length = 136
Score = 32.3 bits (72), Expect = 0.082
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 3 PGLGVHLQRKHVTKHLPVPGPISVGPQA-------APPGATVT---------HPPTKPLI 46
PG V+ Q T HLP P + P A P G+T+ +PP ++
Sbjct: 18 PGNPVYPQ----TLHLPQAPPYTDAPPAYSESVAVGPLGSTIPMAYYPVGPIYPPGSTVL 73
Query: 47 CSGGFIPGTRPRLCSGHADGNIPAGPGLCSP 77
GG+ G R +G GNIP P C P
Sbjct: 74 VEGGYDAGAR--FGAGATAGNIPPPPPGCPP 102
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 21 PGPISVGPQAAPPG--ATVTHPPTKPLICSGGFIPGTRPRLCSGHAD--GNIPAGPGLCS 76
PGP+ GP PPG HP P P P + HAD ++P GPG+
Sbjct: 609 PGPMGPGPNMGPPGPMGGPMHPDMHP-----DMHPDMHPDM---HADMHADMPMGPGMNP 660
Query: 77 PQLLLPGG 84
+ PGG
Sbjct: 661 GPPMGPGG 668
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 32.0 bits (71), Expect = 0.11
Identities = 36/118 (30%), Positives = 40/118 (33%), Gaps = 35/118 (29%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTR----------------PR---- 58
P P P P PP A PP P GG PG R PR
Sbjct: 96 PPPPPPPPAPPRPPPAAP--SPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHR 153
Query: 59 ------LCSGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRS-----PFPGPGTPSA 105
L +GH+ AGP + P G W P+V P P PGTPSA
Sbjct: 154 GAGARLLSNGHSAPEPRAGP--ANRLAGSPPGSGQWKPKVESGDPSLHPPPSPGTPSA 209
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 32.0 bits (71), Expect = 0.11
Identities = 36/118 (30%), Positives = 40/118 (33%), Gaps = 35/118 (29%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTR----------------PR---- 58
P P P P PP A PP P GG PG R PR
Sbjct: 96 PPPPPPPPAPPRPPPAAP--SPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHR 153
Query: 59 ------LCSGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRS-----PFPGPGTPSA 105
L +GH+ AGP + P G W P+V P P PGTPSA
Sbjct: 154 GAGARLLSNGHSAPEPRAGP--ANRLAGSPPGSGQWKPKVESGDPSLHPPPSPGTPSA 209
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 32.0 bits (71), Expect = 0.11
Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICS-GGFIPGTRPRL 59
+SP G Q T LP G GP A+P A P + S G + + L
Sbjct: 578 LSPSSGYSSQSG--TPTLPPKG--LAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSL 633
Query: 60 CSGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPS 104
CS +D PA PQ+L P G F P + P P PS
Sbjct: 634 CSSSSD---PAPSDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPS 675
Score = 26.9 bits (58), Expect = 3.4
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQ 78
P P P + P ++ PG P +P+ CS G G PR G L +P
Sbjct: 835 PPPAPPAPAPASSAPGHVAKLPQKEPVGCSKG---GGPPR---------EDVGAPLVTPS 882
Query: 79 LL-LPGGQLFWAPEVLRSPFPGPGTP 103
LL + + AP +P GP P
Sbjct: 883 LLQMVRLRSVGAPGGAPTPALGPSAP 908
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 21/91 (23%)
Query: 21 PGPISVGPQAAPPGAT--VTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQ 78
PGPI+ G PG + H P P GG +PG H P GP L P
Sbjct: 622 PGPIANGFPPGGPGGPKGMQHFPPGP----GGPMPGP-------HGGPGGPVGPRLLGPP 670
Query: 79 LLLPGGQLFW--------APEVLRSPFPGPG 101
GG FW + P PGPG
Sbjct: 671 PPPRGGDPFWDGPGDPMRGGPMRGGPGPGPG 701
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 28 PQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQLLLPGGQLF 87
P A PG +PP + C GG P P + N P PG C P P G
Sbjct: 4 PNAGQPGPN-PYPPN--IGCPGGSNPAHPPPI-------NPPFPPGPCPPPPGAPHGNPA 53
Query: 88 WAPEVLRSPFPGPGTP 103
+ P P P PG P
Sbjct: 54 FPPGGPPHPVPQPGYP 69
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 21 PGPISVGPQAAP-PGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQL 79
P P + P AAP P A PP P P T R GH G A P + P
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPP------APATLAR-PPGHPAGPPTAAPAVPPPAA 302
Query: 80 LLPGGQLFWAPEVLRSPFPGPGTPS 104
GG AP +P P G P+
Sbjct: 303 AQNGGSAGAAP----APAPAAGGPA 323
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 18 LPVPGPISVGPQAAPPGATVTHPPT---KPLICSGGFIPGTRPRLCSGHADGNIPAGPGL 74
LP P + G P HPP +P + +PR S G G +
Sbjct: 35 LPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGG--GGGDI 92
Query: 75 CSPQLLLPGGQLFWAPEVLRSPFPGP 100
SP L P Q AP V +P PGP
Sbjct: 93 ASP--LPPALQPRGAPAVPAAPSPGP 116
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQ 78
P PGP+ P + PP PP+ P+ + +P P P GP +P
Sbjct: 112 PSPGPLPARPSSPPPS-----PPSPPVPTAQSSLPAPWP-----------PQGPRSPAPS 155
Query: 79 LLLP 82
L P
Sbjct: 156 LRAP 159
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 18 LPVPGPISVGPQAAPPGATVTHPPT---KPLICSGGFIPGTRPRLCSGHADGNIPAGPGL 74
LP P + G P HPP +P + +PR S G G +
Sbjct: 35 LPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGG--GGGDI 92
Query: 75 CSPQLLLPGGQLFWAPEVLRSPFPGP 100
SP L P Q AP V +P PGP
Sbjct: 93 ASP--LPPALQPRGAPAVPAAPSPGP 116
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPA 70
P PGP+ P + PP ++ P +P++ + RP L G++ A
Sbjct: 112 PSPGPLPARPSSPPPRPSLPSGPHRPVLPPSA-LAAPRPPLARPLPQGSVTA 162
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 18 LPVPGPISVGPQAAPPGATVTHPPT---KPLICSGGFIPGTRPRLCSGHADGNIPAGPGL 74
LP P + G P HPP +P + +PR S G G +
Sbjct: 35 LPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGG--GGGDI 92
Query: 75 CSPQLLLPGGQLFWAPEVLRSPFPGP 100
SP L P Q AP V +P PGP
Sbjct: 93 ASP--LPPALQPRGAPAVPAAPSPGP 116
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 19 PVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPA 70
P PGP+ P + PP ++ P +P++ + RP L G++ A
Sbjct: 112 PSPGPLPARPSSPPPRPSLPSGPHRPVLPPSA-LAAPRPPLARPLPQGSVTA 162
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 30.8 bits (68), Expect = 0.24
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 19/94 (20%)
Query: 21 PGPISVGPQAAPP------------GATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNI 68
PG G APP A + PPT + G P T+P L + A+G
Sbjct: 534 PGTAPAGTPGAPPLAGMAIVKEEETEAAIGAPPT----ATEG--PETKPVLMA-LAEGPG 586
Query: 69 PAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGT 102
GP L SP G APE +P GPGT
Sbjct: 587 AEGPRLASPSGSTSSGLEVVAPEGTSAPGGGPGT 620
>gi|7661886 DAZ associated protein 2 isoform a [Homo sapiens]
Length = 168
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 17 HLPVPGPISVGPQAA-------PPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIP 69
+LP+ ++VGP + P G +PP ++ GG+ G R +G GNIP
Sbjct: 71 YLPMAQSVAVGPLGSTIPMAYYPVGPI--YPPGSTVLVEGGYDAGAR--FGAGATAGNIP 126
Query: 70 AGPGLCSP 77
P C P
Sbjct: 127 PPPPGCPP 134
>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
Length = 590
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 31 APPGATVTHPPTKPLICSGGFIPGTRPRLCSGHADGNIPAGPGLCSPQL--LLPGGQL-- 86
APPG PP P + GF+P LC+ PA GL P L L PG L
Sbjct: 514 APPG----DPP--PTLLHAGFLPPVVRGLCTPGTIRYGPAELGLVYPHLQRLGPGPALPE 567
Query: 87 -FWAPEVLRSPFPGP 100
F+ P L P+PGP
Sbjct: 568 AFYPP--LGLPYPGP 580
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,468,127
Number of Sequences: 37866
Number of extensions: 515655
Number of successful extensions: 2305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 2062
Number of HSP's gapped (non-prelim): 427
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.