Guide to the Human Genome
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Name: PRR13 Sequence: fasta or formatted (148aa) NCBI GI: 8922157
Description:

proline rich 13 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {98aa} proline rich 13 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          8           1
 C cysteine            2.0          3           1
 D aspartate           2.0          3           1
 E glutamate           0.0          0           0
 F phenylalanine       1.4          2           1
 G glycine            11.5         17           2
 H histidine           7.4         11           2
 I isoleucine          2.7          4           1
 K lysine              8.8         13           2
 L leucine             1.4          2           1
 M methionine          3.4          5           1
 N asparagine          5.4          8           1
 P proline            29.7         44           4
 Q glutamine           3.4          5           1
 R arginine            0.0          0           0
 S serine              8.1         12          10
 T threonine           0.0          0           0
 V valine              3.4          5           1
 W tryptophan          0.7          1           1
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 13 isoform 1 
PRR13                 0.567   proline rich 13 isoform 2 
LOC100129201          0.402   PREDICTED: hypothetical protein 
GRINA                 0.162   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.162   glutamate receptor, ionotropic, N-methyl D-aspartate...
WBP11                 0.156   WW domain binding protein 11 
FMN1                  0.137   formin 1 
DIAPH1                0.134   diaphanous 1 isoform 2 
DIAPH1                0.134   diaphanous 1 isoform 1 
SETD1B                0.134   SET domain containing 1B 
WASF2                 0.131   WAS protein family, member 2 
FMNL1                 0.131   formin-like 1 
INF2                  0.128   inverted formin 2 isoform 2 
INF2                  0.128   inverted formin 2 isoform 1 
SMR3A                 0.128   submaxillary gland androgen regulated protein 3 homo...
CCNK                  0.128   cyclin K isoform 1 
CPSF6                 0.125   cleavage and polyadenylation specific factor 6, 68 ...
SF3B4                 0.125   splicing factor 3b, subunit 4 
FMN2                  0.125   formin 2 
PRR12                 0.125   proline rich 12 
WASL                  0.121   Wiskott-Aldrich syndrome gene-like protein 
PRB2                  0.118   proline-rich protein BstNI subfamily 2 
PRB1                  0.118   proline-rich protein BstNI subfamily 1 isoform 1 pre...
MAPK1IP1L             0.118   MAPK-interacting and spindle-stabilizing protein [Ho...
ENAH                  0.115   enabled homolog isoform a 
ENAH                  0.115   enabled homolog isoform b 
PRB3                  0.115   proline-rich protein BstNI subfamily 3 precursor [H...
C6orf132              0.115   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.115   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.115   PREDICTED: hypothetical protein LOC647024 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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