Guide to the Human Genome
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Name: LOC100287030 Sequence: fasta or formatted (138aa) NCBI GI: 239745970
Description:

PREDICTED: hypothetical protein XP_002343628

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          8           2
 C cysteine            2.2          3           1
 D aspartate           0.7          1           1
 E glutamate           3.6          5           1
 F phenylalanine       2.2          3           1
 G glycine            15.9         22           2
 H histidine           3.6          5           1
 I isoleucine          2.9          4           1
 K lysine              2.9          4           1
 L leucine            11.6         16           3
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline            18.8         26           2
 Q glutamine           3.6          5           1
 R arginine            6.5          9           1
 S serine              7.2         10           3
 T threonine           5.1          7           1
 V valine              4.3          6           1
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343628 
LOC100293844          0.689   PREDICTED: hypothetical protein 
LOC100291048          0.355   PREDICTED: hypothetical protein XP_002347845 
LOC100292352          0.297   PREDICTED: hypothetical protein 
LOC100287760          0.297   PREDICTED: hypothetical protein 
LOC100287760          0.297   PREDICTED: hypothetical protein XP_002343356 
WBP11                 0.062   WW domain binding protein 11 
DIAPH1                0.051   diaphanous 1 isoform 2 
DIAPH1                0.051   diaphanous 1 isoform 1 
LOC100292485          0.044   PREDICTED: hypothetical protein 
LOC100287491          0.044   PREDICTED: hypothetical protein 
LOC100287491          0.044   PREDICTED: hypothetical protein XP_002342841 
LOC100294080          0.044   PREDICTED: similar to RAB19, member RAS oncogene fa...
FOXD4                 0.044   forkhead box D4 
LOC100292058          0.040   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.040   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.040   PREDICTED: hypothetical protein XP_002343287 
CASKIN1               0.037   CASK interacting protein 1 
LOC100130431          0.033   PREDICTED: hypothetical protein 
LOC100130431          0.033   PREDICTED: hypothetical protein 
LOC100290274          0.033   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.033   PREDICTED: hypothetical protein XP_002342846 
LOC100293112          0.033   PREDICTED: hypothetical protein 
LOC100288817          0.033   PREDICTED: hypothetical protein 
LOC442142             0.033   PREDICTED: hypothetical protein 
LOC100288817          0.033   PREDICTED: hypothetical protein XP_002343307 
LOC442142             0.033   PREDICTED: hypothetical protein 
FOXD4L3               0.033   forkhead box D4-like 3 
WIPF3                 0.033   WAS/WASL interacting protein family, member 3 [Homo...
EFS                   0.033   embryonal Fyn-associated substrate isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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