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Search of human proteins with 239756926
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
(424 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 909 0.0
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 495 e-140
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 495 e-140
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 495 e-140
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 495 e-140
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 494 e-140
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 494 e-140
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 494 e-140
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 491 e-139
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 332 4e-91
gi|239745813 PREDICTED: hypothetical protein XP_002343595 [Homo ... 179 3e-45
gi|239756790 PREDICTED: similar to hCG1991532 [Homo sapiens] 177 2e-44
gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo ... 149 4e-36
gi|148235002 TBC1 domain family, member 26 [Homo sapiens] 149 6e-36
gi|239756750 PREDICTED: similar to TBC1 domain family, member 28... 140 2e-33
gi|151108489 TBC1 domain family, member 28 [Homo sapiens] 140 2e-33
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 121 1e-27
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 121 1e-27
gi|241982780 programmed cell death 6 interacting protein isoform... 47 4e-05
gi|22027538 programmed cell death 6 interacting protein isoform ... 47 4e-05
gi|239756746 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 47 4e-05
gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 46 6e-05
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 46 6e-05
gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo sapi... 45 1e-04
gi|13994322 TBC1 domain family, member 10A [Homo sapiens] 44 3e-04
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 42 0.001
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 41 0.002
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 40 0.003
gi|157785645 SPEG complex locus [Homo sapiens] 39 0.007
gi|38348348 TBC1 domain family, member 10C [Homo sapiens] 39 0.007
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 909 bits (2349), Expect = 0.0
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL
Sbjct: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI
Sbjct: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGTNLLCISGRWGGPQKD 180
KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGTNLLCISGRWGGPQKD
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGTNLLCISGRWGGPQKD 180
Query: 181 PAPPKRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQ 240
PAPPKRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQ
Sbjct: 181 PAPPKRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQ 240
Query: 241 GSSASRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDT 300
GSSASRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDT
Sbjct: 241 GSSASRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDT 300
Query: 301 YPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQ 360
YPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQ
Sbjct: 301 YPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQ 360
Query: 361 EDQPATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQF 420
EDQPATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQF
Sbjct: 361 EDQPATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQF 420
Query: 421 PPGF 424
PPGF
Sbjct: 421 PPGF 424
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 495 bits (1275), Expect = e-140
Identities = 230/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 310 bits (794), Expect = 2e-84
Identities = 143/165 (86%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGH+AGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHQAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D D+SGTLR+H+FFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGT 165
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 495 bits (1275), Expect = e-140
Identities = 230/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 313 bits (802), Expect = 2e-85
Identities = 146/165 (88%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D DVSGTLR+HIFFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGT 165
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 495 bits (1275), Expect = e-140
Identities = 230/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 311 bits (798), Expect = 5e-85
Identities = 144/165 (87%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D D+SGTLR+H+FFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGT 165
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 495 bits (1275), Expect = e-140
Identities = 230/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 311 bits (798), Expect = 5e-85
Identities = 144/165 (87%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D D+SGTLR+H+FFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGT 165
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 494 bits (1271), Expect = e-140
Identities = 229/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRK+GDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 310 bits (794), Expect = 2e-84
Identities = 144/165 (87%), Positives = 156/165 (94%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLN EE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGK+SSEHIQ++D DVSGTLR+HIFFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGT 165
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 494 bits (1271), Expect = e-140
Identities = 229/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRK+GDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 313 bits (802), Expect = 2e-85
Identities = 146/165 (88%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D DVSGTLR+HIFFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGT 165
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 494 bits (1271), Expect = e-140
Identities = 229/240 (95%), Positives = 232/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRK+GDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 549
Score = 313 bits (802), Expect = 2e-85
Identities = 146/165 (88%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D DVSGTLR+HIFFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGT 165
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 491 bits (1264), Expect = e-139
Identities = 229/240 (95%), Positives = 231/240 (96%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRLTKTSRCGPWARF NRFVD WARD+DTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA
Sbjct: 310 KRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 369
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
SRPVPASRGGKTLCKGDRQAPPGPPARFP PIWSASPPRAPRSSTPCPGGAVREDTYPVG
Sbjct: 370 SRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVG 429
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDV PWFR YDFRQSCWVRAISQEDQ
Sbjct: 430 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQL 489
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF 424
A CWQAEHPAERVRSAF+APSTDSDQGTPFRARDEQQ APTSGPCLCGLHLESSQFPPGF
Sbjct: 490 APCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQYAPTSGPCLCGLHLESSQFPPGF 549
Score = 311 bits (798), Expect = 5e-85
Identities = 144/165 (87%), Positives = 157/165 (95%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MDVVEV GSWWAQEREDIIMKYEKGHRAGLPEDKGPKPF SYNNN+DH G+ HETELPPL
Sbjct: 1 MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPL 60
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE KQIRREISRKSKWV MLG+W+ YK+SRKLIDRAY+G+PMNIRGPMWSVLLNIEE+
Sbjct: 61 TAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEM 120
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYGT 165
KLKNPGRYQIMKEKGKRSSEHIQ++D D+SGTLR+H+FFRDRYGT
Sbjct: 121 KLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGT 165
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 332 bits (851), Expect = 4e-91
Identities = 165/221 (74%), Positives = 174/221 (78%), Gaps = 2/221 (0%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
KRL KTSRCG WAR N+F D WA +DDTVLKHLRAS KKLTRKQGDLPPPAK EQGS A
Sbjct: 309 KRLMKTSRCGLWARLRNQFFDTWAMNDDTVLKHLRASTKKLTRKQGDLPPPAKREQGSLA 368
Query: 245 SRPVPASRGGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG 304
RPVPASRGGKTLCKG RQAPPGPPA+F PI SASPP A R STPCPGGAVREDTYPVG
Sbjct: 369 PRPVPASRGGKTLCKGYRQAPPGPPAQFQRPICSASPPWASRFSTPCPGGAVREDTYPVG 428
Query: 305 TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQP 364
TQGVPS ALAQGGPQGSWRFL+W SMPRLPTDLD+G PWF YDF SCWVRAISQEDQ
Sbjct: 429 TQGVPSLALAQGGPQGSWRFLEWKSMPRLPTDLDIGGPWFPHYDFEWSCWVRAISQEDQL 488
Query: 365 ATCWQAEHPAERVRSAFSAPSTDSDQGTPFRARDEQQCAPT 405
ATCWQAEH E S P S T ++ ++Q PT
Sbjct: 489 ATCWQAEHCGEVHNKDMSWPEEMS--FTANSSKIDRQKVPT 527
Score = 261 bits (666), Expect = 1e-69
Identities = 123/164 (75%), Positives = 145/164 (88%), Gaps = 1/164 (0%)
Query: 1 MDVVEVVGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPL 60
MD+VE S AQER+DI+MKY+KGHRAGLPEDKGP+P G N++ID FG+ HETELPP+
Sbjct: 1 MDMVENADSLQAQERKDILMKYDKGHRAGLPEDKGPEPVG-INSSIDRFGILHETELPPV 59
Query: 61 TAREVKQIRREISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEI 120
TARE K+IRRE++R SKW++MLGEW+TYK+S KLIDR Y+GIPMNIRGP+WSVLLNI+EI
Sbjct: 60 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI 119
Query: 121 KLKNPGRYQIMKEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
KLKNPGRYQIMKE+GKRSSEHI +DLDV TLR H+FFRDRYG
Sbjct: 120 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYG 163
>gi|239745813 PREDICTED: hypothetical protein XP_002343595 [Homo
sapiens]
Length = 279
Score = 179 bits (455), Expect = 3e-45
Identities = 101/189 (53%), Positives = 114/189 (60%), Gaps = 24/189 (12%)
Query: 185 KRLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSA 244
K L K SR G WARF ++F WA D D VL+HL+AS+ +KP+QGSSA
Sbjct: 110 KHLMKASRSGLWARFQDQFPQTWALDSDAVLRHLQASVL------------SKPKQGSSA 157
Query: 245 SRPVPASR-GGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPV 303
RP AS G KTLCKG RQAPPGP A F IWSASPP P TPCP V
Sbjct: 158 PRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCP--------VLV 209
Query: 304 G-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQ-- 360
G +QGVP A AQGGP+ SWR+LQWNS+P+LP D DV PWF YDF Q CW R S+
Sbjct: 210 GLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKCV 269
Query: 361 EDQPATCWQ 369
D P T Q
Sbjct: 270 LDSPGTMGQ 278
>gi|239756790 PREDICTED: similar to hCG1991532 [Homo sapiens]
Length = 167
Score = 177 bits (448), Expect = 2e-44
Identities = 99/185 (53%), Positives = 112/185 (60%), Gaps = 24/185 (12%)
Query: 189 KTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPV 248
K SR G WARF ++F WA D D VL+HL+AS+ +KP+QGSSA RP
Sbjct: 2 KASRSGLWARFQDQFPQTWALDSDAVLRHLQASVL------------SKPKQGSSAPRPE 49
Query: 249 PASR-GGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVG-TQ 306
AS G KTLCKG RQAPPGP A F IWSASPP P TPCP VG +Q
Sbjct: 50 LASPCGRKTLCKGSRQAPPGPQAHFQQRIWSASPPWVPLPFTPCP--------VLVGLSQ 101
Query: 307 GVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQ--EDQP 364
GVP A AQGGP+ SWR+LQWNS+P+LP D DV PWF YDF Q CW R S+ D P
Sbjct: 102 GVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKCVLDSP 161
Query: 365 ATCWQ 369
T Q
Sbjct: 162 GTMGQ 166
>gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo
sapiens]
Length = 179
Score = 149 bits (377), Expect = 4e-36
Identities = 82/141 (58%), Positives = 89/141 (63%), Gaps = 12/141 (8%)
Query: 233 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPC 291
P AKP+QGSSA RP AS G KTLCKG RQAPPGP A F IWSASPP P TPC
Sbjct: 46 PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
Query: 292 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFR 350
P VG +QGVP A AQGGP+ SWR+LQWNS+P+LP D DV PWF YDF
Sbjct: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
Query: 351 QSCWVRAISQ--EDQPATCWQ 369
Q CW R S+ D P T Q
Sbjct: 158 QGCWARVPSKCVLDSPGTMGQ 178
>gi|148235002 TBC1 domain family, member 26 [Homo sapiens]
Length = 250
Score = 149 bits (375), Expect = 6e-36
Identities = 75/149 (50%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Query: 18 IIMKYEKGHRAGLPEDKGPKPFG--SYNNNIDHFGMQHETELPPLTAREVKQIRREISRK 75
II KYE+GHRAG D G + Y NN+ G+ HE ELP ++A EVKQ R+E R
Sbjct: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNNL---GIVHEMELPRVSALEVKQRRKESKRT 75
Query: 76 SKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKEKG 135
+KW KML +W Y++++KL R Y+ IP+ +RG WS+LL+I+ IK +NPG+Y++MKEKG
Sbjct: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
Query: 136 KRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
KRSS I + LDVS TL++H+ F R+G
Sbjct: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFG 164
>gi|239756750 PREDICTED: similar to TBC1 domain family, member 28
[Homo sapiens]
Length = 234
Score = 140 bits (354), Expect = 2e-33
Identities = 73/149 (48%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 18 IIMKYEKGHRAGLPEDKGPKPFG--SYNNNIDHFGMQHETELPPLTAREVKQIRREISRK 75
II KYE+GHRAG D G + Y NN+ G+ HE ELP ++A EVKQ R+E R
Sbjct: 43 IITKYEQGHRAGAAVDLGHEQVDVRKYTNNL---GIVHEMELPHVSALEVKQRRKESKRT 99
Query: 76 SKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKEKG 135
+KW KML +W Y++++KL R + IP+ +RG S+LL+I++IK +NPG+Y++MKEKG
Sbjct: 100 NKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKIKSQNPGKYKVMKEKG 159
Query: 136 KRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
KRSS I + LDVS TL++H+ F R+G
Sbjct: 160 KRSSRIIHCIQLDVSHTLQKHMMFIQRFG 188
>gi|151108489 TBC1 domain family, member 28 [Homo sapiens]
Length = 210
Score = 140 bits (354), Expect = 2e-33
Identities = 73/149 (48%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 18 IIMKYEKGHRAGLPEDKGPKPFG--SYNNNIDHFGMQHETELPPLTAREVKQIRREISRK 75
II KYE+GHRAG D G + Y NN+ G+ HE ELP ++A EVKQ R+E R
Sbjct: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNNL---GIVHEMELPRVSALEVKQRRKESKRT 75
Query: 76 SKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKEKG 135
+KW KML +W Y++++KL R + IP+ +RG S+LL+I++IK +NPG+Y++MKEKG
Sbjct: 76 NKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKIKSQNPGKYKVMKEKG 135
Query: 136 KRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
KRSS I + LDVS TL++H+ F R+G
Sbjct: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFG 164
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 121 bits (303), Expect = 1e-27
Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 12 AQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPLTAREVKQIRRE 71
AQER +I+ KY++G E + Y D FG HE ELP +Q E
Sbjct: 12 AQERAEIVAKYDRGREGAEIEPWEDADYLVYKVT-DRFGFLHEEELPDHNVAVERQKHLE 70
Query: 72 ISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIM 131
I R +KW+KML W+ YKN+ K R Y+GIP+ +RG +W++LL I ++K + Y +
Sbjct: 71 IERTTKWLKMLKGWEKYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKL 130
Query: 132 KEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
K + + S I+Q+DLDV+ T R HI FRDRYG
Sbjct: 131 KHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYG 163
Score = 31.2 bits (69), Expect = 1.9
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 210 DDDTVLKHLRASMKKLTRKQGDLPPPAK----PEQGSSASRPVPASRGGKTLCKGDRQAP 265
+DD V++ L+ SM +L R + DLP P K P++ P S G L G R
Sbjct: 334 EDDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSV- 392
Query: 266 PGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPA 312
G P SP + R + P +P G P A
Sbjct: 393 -GRP----------SPLASGRRESGAPHRRHEHSPHPQSRTGTPERA 428
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 121 bits (303), Expect = 1e-27
Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 12 AQEREDIIMKYEKGHRAGLPEDKGPKPFGSYNNNIDHFGMQHETELPPLTAREVKQIRRE 71
AQER +I+ KY++G E + Y D FG HE ELP +Q E
Sbjct: 29 AQERAEIVAKYDRGREGAEIEPWEDADYLVYKVT-DRFGFLHEEELPDHNVAVERQKHLE 87
Query: 72 ISRKSKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIM 131
I R +KW+KML W+ YKN+ K R Y+GIP+ +RG +W++LL I ++K + Y +
Sbjct: 88 IERTTKWLKMLKGWEKYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKL 147
Query: 132 KEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
K + + S I+Q+DLDV+ T R HI FRDRYG
Sbjct: 148 KHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYG 180
Score = 31.2 bits (69), Expect = 1.9
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 210 DDDTVLKHLRASMKKLTRKQGDLPPPAK----PEQGSSASRPVPASRGGKTLCKGDRQAP 265
+DD V++ L+ SM +L R + DLP P K P++ P S G L G R
Sbjct: 351 EDDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSV- 409
Query: 266 PGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPA 312
G P SP + R + P +P G P A
Sbjct: 410 -GRP----------SPLASGRRESGAPHRRHEHSPHPQSRTGTPERA 445
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 46.6 bits (109), Expect = 4e-05
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 198 RFWNRFVD---AWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGG 254
RF N+ D A + D +LK L+ S+ + +P PA + P P +
Sbjct: 691 RFQNKCSDIVFARKTERDELLKDLQQSIAR-EPSAPSIPTPAYQSSPAGGHAPTPPTPAP 749
Query: 255 KTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALA 314
+T+ P PPAR P P+ A+ RAP ++ P P GA P T G P A
Sbjct: 750 RTM----PPTKPQPPARPPPPVLPAN--RAPSATAPSPVGAGTAAPAPSQTPGSAPPPQA 803
Query: 315 QGGP 318
QG P
Sbjct: 804 QGPP 807
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 46.6 bits (109), Expect = 4e-05
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 198 RFWNRFVD---AWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGG 254
RF N+ D A + D +LK L+ S+ + +P PA + P P +
Sbjct: 686 RFQNKCSDIVFARKTERDELLKDLQQSIAR-EPSAPSIPTPAYQSSPAGGHAPTPPTPAP 744
Query: 255 KTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALA 314
+T+ P PPAR P P+ A+ RAP ++ P P GA P T G P A
Sbjct: 745 RTM----PPTKPQPPARPPPPVLPAN--RAPSATAPSPVGAGTAAPAPSQTPGSAPPPQA 798
Query: 315 QGGP 318
QG P
Sbjct: 799 QGPP 802
>gi|239756746 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 339
Score = 46.6 bits (109), Expect = 4e-05
Identities = 77/272 (28%), Positives = 118/272 (43%), Gaps = 55/272 (20%)
Query: 18 IIMKYEKGHRAGLPEDKGP--KPFGSYNNNIDHFGMQHETELPPLTAREVKQIRREISRK 75
II KYE+G +A P G +P S N+ + H LTA+EV R++SR
Sbjct: 19 IITKYEQGPKAQDPASMGRCRRPGSSANSIMAH-----------LTAKEVGY-HRDLSRN 66
Query: 76 SKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKEKG 135
+ + L E D + + + G P + + +L + E++ K+ + IM++ G
Sbjct: 67 TAVLLYLPEEDAF-----WVAGSAAGRPNTAQ--LRKLLSHQEQVLHKSFPK--IMRQLG 117
Query: 136 KRSSEHIQQMDLDVSGTLRRHIF--FRD--RYGTNL-----LCISGRWGGPQKDPAPPK- 185
K L + G++ + F D +G L L + G A K
Sbjct: 118 KEG--------LCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKI 169
Query: 186 ---RLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGS 242
L K S W F R +WA +D++VL++L+ SMK+LT+K DLP P Q
Sbjct: 170 HREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQ-- 226
Query: 243 SASRPVPA----SRGGKTLC----KGDRQAPP 266
+A R A S+ GK C GD +A P
Sbjct: 227 NAHRCTIAWGLQSKAGKNSCTSRASGDFRAHP 258
>gi|239745731 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 339
Score = 46.2 bits (108), Expect = 6e-05
Identities = 74/270 (27%), Positives = 115/270 (42%), Gaps = 51/270 (18%)
Query: 18 IIMKYEKGHRAGLPEDKGP--KPFGSYNNNIDHFGMQHETELPPLTAREVKQIRREISRK 75
II KYE+G +A P G +P S N+ + H LTA+EV R++SR
Sbjct: 19 IITKYEQGPKAQDPASMGRCRRPGSSANSIMAH-----------LTAKEVGY-HRDLSRN 66
Query: 76 SKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKEKG 135
+ + L E D + + + G P + + +L + E++ K+ + IM++ G
Sbjct: 67 TAVLLYLPEEDAF-----WVAGSAAGRPNTAQ--LRKLLSHQEQVLHKSFPK--IMRQLG 117
Query: 136 KRSSEHIQQMDLDVSGTLRRHIF--FRD--RYGTNL-----LCISGRWGGPQKDPAPPK- 185
K L + G++ + F D +G L L + G A K
Sbjct: 118 KEG--------LCIEGSMLTRLLQCFLDGKSFGLTLRLWDVLILEGEQVLTAMAHASFKI 169
Query: 186 ---RLTKTSRCGPWARFWNRFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGS 242
L K S W F R +WA +D++VL++L+ SMK+LT+K DLP P Q +
Sbjct: 170 HREHLMKLSWSTVW-EFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNA 228
Query: 243 SASRPV--PASRGGKTLC----KGDRQAPP 266
S+ GK C GD +A P
Sbjct: 229 HCCTIAWGLQSKAGKNSCTSRASGDFRAHP 258
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 46.2 bits (108), Expect = 6e-05
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 74 RKSKWVKMLGEWDTYKNSR--KLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIM 131
R+ KW+ M WD + + R K+ R +GIP ++R W L N +E+ +NPG+++ +
Sbjct: 331 RELKWLDMFSNWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEEL 390
Query: 132 KEKGKRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
E+ + + ++ D+ H F R G
Sbjct: 391 -ERAPGDPKWLDVIEKDLHRQFPFHEMFAARGG 422
>gi|239751241 PREDICTED: TBC1 domain family, member 27 [Homo
sapiens]
Length = 617
Score = 45.4 bits (106), Expect = 1e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 196 WARFWN---RFVDAWARDDDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPV--PA 250
W+ W R +WA +D++VL++L+ SMK+LT+K DLP P Q +
Sbjct: 309 WSTVWEFQERLSQSWALEDNSVLRNLQTSMKELTKKHWDLPSPESLLQNAHCCTIAWGLQ 368
Query: 251 SRGGKTLC----KGDRQAPP 266
S+ GK C GD +A P
Sbjct: 369 SKAGKNSCTSRASGDFRAHP 388
>gi|13994322 TBC1 domain family, member 10A [Homo sapiens]
Length = 508
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 74 RKSKWVKMLGEWDTY--KNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRY 128
R+SKW+ ML WD + K +K+ R +GIP ++RG W L + +NPG++
Sbjct: 82 RESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQNPGKF 138
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/212 (24%), Positives = 73/212 (34%), Gaps = 37/212 (17%)
Query: 221 SMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKG-DRQAPPGPPARFPWPIWSA 279
++K R+Q PPP P +G P P G R APP PP+R P
Sbjct: 267 AVKNELRRQA--PPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPP 324
Query: 280 SPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSM--------- 330
PP P + P P YP +PS A G P L +
Sbjct: 325 PPPSRPSVAVPPP---PPNRMYPPPPPALPSSA-PSGPPPPPPSVLGVGPVAPPPPPPPP 380
Query: 331 --------PRLPTDLD------VGDPWFRRYDFRQSCWVRAISQEDQPATCWQAEHPAER 376
P LP+D D G+ R+ ++ + Q +P +C + ++
Sbjct: 381 PPPGPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQ 440
Query: 377 VRSAFSAPS-TDSDQGTPFRARDEQQCAPTSG 407
+R S D + TP APTSG
Sbjct: 441 IRQGIQLKSVADGQESTP------PTPAPTSG 466
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 230 GDLPPPAKPEQGSSASRPVPASRGGKTL--CKGDRQAPPGPPARFPWPIWSASPPRAPRS 287
G PPP P +AS PVPA + L G PP PP P P+ + PP+
Sbjct: 805 GATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPV-TLPPPQLVPE 863
Query: 288 STPCPGG--AVRED 299
TP GG A+ ED
Sbjct: 864 GTPGGGGPPALEED 877
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 40.4 bits (93), Expect = 0.003
Identities = 39/123 (31%), Positives = 44/123 (35%), Gaps = 32/123 (26%)
Query: 225 LTRKQGDLPPPAKP-------EQGSSASRPVPASRGGKTLCKGDRQAPP----------- 266
L +QGD P + QGS R P RG K L +GD AP
Sbjct: 1468 LNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAKGL-RGDPGAPGVDSSIEGPTGL 1526
Query: 267 ----GPPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSP-----ALAQGG 317
G R WP PP P S R T P GT G+P P +L G
Sbjct: 1527 KGERGRQGRRGWP----GPPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKG 1582
Query: 318 PQG 320
PQG
Sbjct: 1583 PQG 1585
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 39.3 bits (90), Expect = 0.007
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 46/214 (21%)
Query: 217 HLRASMKKLTRKQGDLPP---------PAKPEQGSSASRPVPASRGGKTLCKGDRQAPPG 267
H+ L R++ DL P PA+P SA P P+ R GK ++PPG
Sbjct: 271 HVSVPQSGLRREEPDLQPQLASEAPRRPAQPPPSKSALLPPPSPRVGK-------RSPPG 323
Query: 268 PPARFPWPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPS----PAL---AQGGPQ- 319
PPA+ A+ P +P T P + EDT +G S P+L A+ PQ
Sbjct: 324 PPAQ------PAATPTSPHRRTQEP--VLPEDTTTEEKRGKKSKSSGPSLAGTAESRPQT 375
Query: 320 ----GSWRFLQWNSMPRLPTDLDVGDPWFRRYDFRQSCWVRAISQEDQPATCWQAEHPAE 375
S R PRL + G + F + R++ + D P P
Sbjct: 376 PLSEASGRLSALGRSPRL---VRAGSRILDKLQFFEE-RRRSLERSDSPPA---PLRPWV 428
Query: 376 RVRSAFSAPSTDSDQGTPF---RARDEQQCAPTS 406
+R A S S++G P+ A E+ AP S
Sbjct: 429 PLRKARSLEQPKSERGAPWGTPGASQEELRAPGS 462
>gi|38348348 TBC1 domain family, member 10C [Homo sapiens]
Length = 446
Score = 39.3 bits (90), Expect = 0.007
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 32 EDKGPKPFGSYNNNIDHFGMQHETELPPLTAREVKQIRREISRKSKWVKMLGEWDTYKNS 91
E GP P+ D +G + P + R+ R+ KWV+M W+ +
Sbjct: 27 ELSGPGPY----RQADRYGFIGGSSAEPGPGHPPADLIRQ--REMKWVEMTSHWEKTMSR 80
Query: 92 R--KLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKE 133
R K+ + +GIP +R W +L + +PG YQ + E
Sbjct: 81 RYKKVKMQCRKGIPSALRARCWPLLCGAHVCQKNSPGTYQELAE 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,834,318
Number of Sequences: 37866
Number of extensions: 1301425
Number of successful extensions: 7014
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 466
Number of HSP's that attempted gapping in prelim test: 5944
Number of HSP's gapped (non-prelim): 1390
length of query: 424
length of database: 18,247,518
effective HSP length: 105
effective length of query: 319
effective length of database: 14,271,588
effective search space: 4552636572
effective search space used: 4552636572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.