Guide to the Human Genome
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Name: LOC100293000 Sequence: fasta or formatted (167aa) NCBI GI: 239756790
Description:

PREDICTED: similar to hCG1991532

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         13           1
 C cysteine            3.0          5           1
 D aspartate           4.2          7           1
 E glutamate           1.2          2           1
 F phenylalanine       3.6          6           1
 G glycine             7.2         12           2
 H histidine           1.8          3           1
 I isoleucine          0.6          1           1
 K lysine              3.6          6           1
 L leucine             9.0         15           1
 M methionine          1.8          3           1
 N asparagine          0.6          1           1
 P proline            13.8         23           2
 Q glutamine           9.0         15           2
 R arginine            6.6         11           1
 S serine             10.8         18           2
 T threonine           3.0          5           1
 V valine              6.6         11           2
 W tryptophan          4.8          8           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1991532 
LOC100287742          0.991   PREDICTED: hypothetical protein XP_002343595 
LOC100290964          0.774   PREDICTED: hypothetical protein XP_002347802 
TBC1D3H               0.463   TBC1 domain family, member 3H 
TBC1D3F               0.463   TBC1 domain family, member 3F 
TBC1D3                0.463   TBC1 domain family, member 3 
TBC1D3E               0.463   TBC1 domain family, member 3E 
TBC1D3B               0.463   TBC1 domain family, member 3B 
TBC1D3D               0.463   TBC1 domain family, member 3D 
USP6                  0.463   ubiquitin specific protease 6 
TBC1D3C               0.463   TBC1 domain family member 3C 
TBC1D3G               0.463   TBC1 domain family, member 3G 
LOC100134348          0.451   PREDICTED: similar to TBC1 domain family, member 3 ...
TBC1D27               0.047   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.047   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.047   PREDICTED: TBC1 domain family, member 27 
SRRD                  0.042   SRR1 domain containing 
ESX1                  0.033   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
LOC100293375          0.030   PREDICTED: hypothetical protein 
DNM3                  0.024   dynamin 3 isoform a 
DNM3                  0.024   dynamin 3 isoform b 
LOC100290263          0.024   PREDICTED: hypothetical protein XP_002347916 
ZNF828                0.018   zinc finger protein 828 
SRCAP                 0.018   Snf2-related CBP activator protein 
ZNF628                0.018   zinc finger protein 628 
LOC653548             0.015   PREDICTED: double homeobox, 4-like 
MAMSTR                0.015   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.015   MEF2 activating motif and SAP domain containing tran...
ADAM19                0.015   ADAM metallopeptidase domain 19 preproprotein 
DUX4                  0.015   double homeobox, 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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