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Search of human proteins with 119703742
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo
sapiens]
(509 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens] 1047 0.0
gi|23397576 bestrophin 4 [Homo sapiens] 517 e-147
gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1 [H... 508 e-144
gi|4759310 bestrophin 1 isoform 1 [Homo sapiens] 499 e-141
gi|212720889 bestrophin 1 isoform 2 [Homo sapiens] 432 e-121
gi|115527106 vitelliform macular dystrophy 2-like 3 isoform 2 [H... 172 8e-43
gi|33356148 formin-like 1 [Homo sapiens] 44 3e-04
gi|216548627 hairy and enhancer of split 4 isoform 1 [Homo sapiens] 40 0.004
gi|10863967 hairy and enhancer of split 4 isoform 2 [Homo sapiens] 40 0.004
gi|31543417 phospholipid scramblase 3 [Homo sapiens] 40 0.005
gi|210032580 SET domain containing 1B [Homo sapiens] 40 0.007
gi|157168329 formin 1 [Homo sapiens] 39 0.009
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 39 0.009
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 39 0.011
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 39 0.011
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 39 0.011
gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap... 39 0.011
gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap... 39 0.011
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.015
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.015
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.015
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 39 0.015
gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens] 39 0.015
gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens] 39 0.015
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 39 0.015
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 39 0.015
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 39 0.015
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 38 0.019
gi|9945318 MAX binding protein [Homo sapiens] 38 0.025
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.025
>gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens]
Length = 509
Score = 1047 bits (2707), Expect = 0.0
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR 60
MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR
Sbjct: 1 MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR 60
Query: 61 YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR 120
YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR
Sbjct: 61 YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR 120
Query: 121 GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK 180
GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK
Sbjct: 121 GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK 180
Query: 181 YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV 240
YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV
Sbjct: 181 YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV 240
Query: 241 TIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGE 300
TIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGE
Sbjct: 241 TIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGE 300
Query: 301 DDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSF 360
DDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSF
Sbjct: 301 DDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSF 360
Query: 361 QGSTFDITLAKEDMQFQRLDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRK 420
QGSTFDITLAKEDMQFQRLDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRK
Sbjct: 361 QGSTFDITLAKEDMQFQRLDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRK 420
Query: 421 NSCVSEASTGASCSCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEP 480
NSCVSEASTGASCSCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEP
Sbjct: 421 NSCVSEASTGASCSCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEP 480
Query: 481 FSIVTMPGPRGPAPPWLPSPIGEEEENLA 509
FSIVTMPGPRGPAPPWLPSPIGEEEENLA
Sbjct: 481 FSIVTMPGPRGPAPPWLPSPIGEEEENLA 509
>gi|23397576 bestrophin 4 [Homo sapiens]
Length = 473
Score = 517 bits (1332), Expect = e-147
Identities = 258/420 (61%), Positives = 314/420 (74%), Gaps = 18/420 (4%)
Query: 1 MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR 60
MTV+YT +VA ARFGGFS LLL WRGSIYKLL++E L F Y LS YR +LT+ Q+
Sbjct: 1 MTVSYTLKVAEARFGGFSGLLLRWRGSIYKLLYKEFLLFGALYAVLSITYRLLLTQEQRY 60
Query: 61 YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR 120
+ ++ YC++ A LIP+SFVLGFYVTLVVNRWWSQY +PLPD LMCV++ +VHG D R
Sbjct: 61 VYAQVARYCNRSADLIPLSFVLGFYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGVDQR 120
Query: 121 GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK 180
GRL RRTL+RYA L++VL+LRSVST V KRFPT++HVV+AGFM++EERKKFE+L S +NK
Sbjct: 121 GRLLRRTLIRYANLASVLVLRSVSTRVLKRFPTMEHVVDAGFMSQEERKKFESLKSDFNK 180
Query: 181 YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV 240
YWVPCVWF+NLAAQARR+GRIRD+ AL LLLEELN +R KC MLFHYDWIS+PLVYTQVV
Sbjct: 181 YWVPCVWFTNLAAQARRDGRIRDDIALCLLLEELNKYRAKCSMLFHYDWISIPLVYTQVV 240
Query: 241 TIALYSYFLACLIGRQFLDPAQGYKD---------------HDLDLCVPIFTLLQFFFYA 285
TIA+YS+F L+GRQF++P G D D+ VP+ TLLQFFFYA
Sbjct: 241 TIAVYSFFALSLVGRQFVEPEAGAAKPQKLLKPGQEPAPALGDPDMYVPLTTLLQFFFYA 300
Query: 286 GWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARA 345
GWLKVAEQ+INPFGEDDDDFETN LIDRN QVS+L+VDEMY +L EKD YWD + +
Sbjct: 301 GWLKVAEQIINPFGEDDDDFETNQLIDRNLQVSLLSVDEMYQNLPPAEKDQYWDEDQPQP 360
Query: 346 PYTAATVFQLRQPSFQGSTFDITLA---KEDMQFQRLDGLDGPMGEAPGDFLQRLLPAGA 402
PYT AT + +PSF GSTF++ ++ ++ +Q + G P A L R L GA
Sbjct: 361 PYTVATAAESLRPSFLGSTFNLRMSDDPEQSLQVEASPGSGRPAPAAQTPLLGRFLGVGA 420
>gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1 [Homo
sapiens]
Length = 668
Score = 508 bits (1307), Expect = e-144
Identities = 244/373 (65%), Positives = 296/373 (79%), Gaps = 1/373 (0%)
Query: 1 MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR 60
MTVTY+++VANA F GF +LLL WRGSIYKLL+RE + F Y A+S YR +LT QKR
Sbjct: 1 MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR 60
Query: 61 YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR 120
YFEKL IYCD+YA IPV+FVLGFYVTLVVNRWW+Q++ +P PD LM +++ +VHG D+
Sbjct: 61 YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH 120
Query: 121 GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK 180
GRL RRTLMRY L+++LI RSVSTAV+KRFPT+DHVVEAGFMT +ERK F +L S + K
Sbjct: 121 GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK 180
Query: 181 YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV 240
YWVP +WF NLA +AR EGRIRD+ L+ L+ E+N +R C +LF YDW+ +PLVYTQVV
Sbjct: 181 YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV 240
Query: 241 TIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGE 300
T+A+Y++F ACLIGRQFLDP +GY HDLDL +PIFTLLQFFFYAGWLKVAEQLINPFGE
Sbjct: 241 TLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGE 300
Query: 301 DDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSF 360
DDDDFETN+ IDRN QVS+LAVDEM+ L ++KD+YWD + AR PYT A PSF
Sbjct: 301 DDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAA-DYCIPSF 359
Query: 361 QGSTFDITLAKED 373
GST + L+ D
Sbjct: 360 LGSTVQMGLSGSD 372
>gi|4759310 bestrophin 1 isoform 1 [Homo sapiens]
Length = 585
Score = 499 bits (1286), Expect = e-141
Identities = 240/377 (63%), Positives = 296/377 (78%), Gaps = 1/377 (0%)
Query: 1 MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR 60
MT+TYT++VANAR G FS+LLL WRGSIYKLL+ E L FL Y + YR LTE Q+
Sbjct: 1 MTITYTSQVANARLGSFSRLLLCWRGSIYKLLYGEFLIFLLCYYIIRFIYRLALTEEQQL 60
Query: 61 YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR 120
FEKL +YCD Y LIP+SFVLGFYVTLVV RWW+QY +P PD LM +V+G V G+D++
Sbjct: 61 MFEKLTLYCDSYIQLIPISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQ 120
Query: 121 GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK 180
GRL RRTL+RYA L VLILRSVSTAV+KRFP+ H+V+AGFMT E K+ E L+ +N
Sbjct: 121 GRLLRRTLIRYANLGNVLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNM 180
Query: 181 YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV 240
+WVP VWF+NL+ +A GRIRD L+ LL E+N R +CG L+ YDWIS+PLVYTQVV
Sbjct: 181 FWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVYTQVV 240
Query: 241 TIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGE 300
T+A+YS+FL CL+GRQFL+PA+ Y H+LDL VP+FT LQFFFY GWLKVAEQLINPFGE
Sbjct: 241 TVAVYSFFLTCLVGRQFLNPAKAYPGHELDLVVPVFTFLQFFFYVGWLKVAEQLINPFGE 300
Query: 301 DDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSF 360
DDDDFETN+++DRN QVS+LAVDEM+ DL +E D+YW+ E + PYTAA+ Q R+ SF
Sbjct: 301 DDDDFETNWIVDRNLQVSLLAVDEMHQDLPRMEPDMYWNKPEPQPPYTAASA-QFRRASF 359
Query: 361 QGSTFDITLAKEDMQFQ 377
GSTF+I+L KE+M+FQ
Sbjct: 360 MGSTFNISLNKEEMEFQ 376
>gi|212720889 bestrophin 1 isoform 2 [Homo sapiens]
Length = 604
Score = 432 bits (1111), Expect = e-121
Identities = 204/316 (64%), Positives = 253/316 (80%), Gaps = 1/316 (0%)
Query: 62 FEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRG 121
FEKL +YCD Y LIP+SFVLGFYVTLVV RWW+QY +P PD LM +V+G V G+D++G
Sbjct: 2 FEKLTLYCDSYIQLIPISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQG 61
Query: 122 RLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKY 181
RL RRTL+RYA L VLILRSVSTAV+KRFP+ H+V+AGFMT E K+ E L+ +N +
Sbjct: 62 RLLRRTLIRYANLGNVLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNMF 121
Query: 182 WVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVVT 241
WVP VWF+NL+ +A GRIRD L+ LL E+N R +CG L+ YDWIS+PLVYTQVVT
Sbjct: 122 WVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVYTQVVT 181
Query: 242 IALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGED 301
+A+YS+FL CL+GRQFL+PA+ Y H+LDL VP+FT LQFFFY GWLKVAEQLINPFGED
Sbjct: 182 VAVYSFFLTCLVGRQFLNPAKAYPGHELDLVVPVFTFLQFFFYVGWLKVAEQLINPFGED 241
Query: 302 DDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSFQ 361
DDDFETN+++DRN QVS+LAVDEM+ DL +E D+YW+ E + PYTAA+ Q R+ SF
Sbjct: 242 DDDFETNWIVDRNLQVSLLAVDEMHQDLPRMEPDMYWNKPEPQPPYTAASA-QFRRASFM 300
Query: 362 GSTFDITLAKEDMQFQ 377
GSTF+I+L KE+M+FQ
Sbjct: 301 GSTFNISLNKEEMEFQ 316
>gi|115527106 vitelliform macular dystrophy 2-like 3 isoform 2 [Homo
sapiens]
Length = 455
Score = 172 bits (435), Expect = 8e-43
Identities = 95/211 (45%), Positives = 117/211 (55%), Gaps = 52/211 (24%)
Query: 163 MTREERKKFENLNSSYNKYWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCG 222
MT +ERK F +L S + KYWVP +WF NLA +AR EGRIRD+ L+ L+ E+N +R C
Sbjct: 1 MTTDERKLFNHLKSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCS 60
Query: 223 MLFHYDWISVPLVYTQVVTIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFF 282
+LF YDW+ +PLVYTQ
Sbjct: 61 LLFGYDWVGIPLVYTQ-------------------------------------------- 76
Query: 283 FYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAE 342
VAEQLINPFGEDDDDFETN+ IDRN QVS+LAVDEM+ L ++KD+YWD +
Sbjct: 77 -------VAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSA 129
Query: 343 ARAPYTAATVFQLRQPSFQGSTFDITLAKED 373
AR PYT A PSF GST + L+ D
Sbjct: 130 ARPPYTLAAA-DYCIPSFLGSTVQMGLSGSD 159
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 443 APECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPIG 502
AP + P PGLP P+ PP+ P +PG EP +PG P PP P P G
Sbjct: 537 APGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPG 596
Query: 503 EE 504
+
Sbjct: 597 TD 598
Score = 37.0 bits (84), Expect = 0.043
Identities = 27/62 (43%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 439 PEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLP 498
P+ A P P L PG PEP PPA P P L P P P PG GP PP P
Sbjct: 554 PQEAPPSAPPQAPPL-PGSPEP---PPAPPLPGDLPPPPPPP---PPPPGTDGPVPPPPP 606
Query: 499 SP 500
P
Sbjct: 607 PP 608
Score = 33.5 bits (75), Expect = 0.47
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 439 PEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLP 498
P A P +P P LP PPP P P GPV P P P P P P
Sbjct: 562 PPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPP-----PPPPPPPPPGGPP 616
Query: 499 SPIGEEEENL 508
+G + L
Sbjct: 617 DALGRRDSEL 626
>gi|216548627 hairy and enhancer of split 4 isoform 1 [Homo sapiens]
Length = 247
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 431 ASCSCAVVPEGAAPECSCGDPLLDP-GLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGP 489
AS S A E APE G PLL G P P PP L+PG GP
Sbjct: 183 ASLSPAAPAEAPAPEVYAGRPLLPSLGGPFPLLAPP-------LLPGLTRALPAAPRAGP 235
Query: 490 RGPAPPWLP 498
+GP PW P
Sbjct: 236 QGPGGPWRP 244
>gi|10863967 hairy and enhancer of split 4 isoform 2 [Homo sapiens]
Length = 221
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 431 ASCSCAVVPEGAAPECSCGDPLLDP-GLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGP 489
AS S A E APE G PLL G P P PP L+PG GP
Sbjct: 157 ASLSPAAPAEAPAPEVYAGRPLLPSLGGPFPLLAPP-------LLPGLTRALPAAPRAGP 209
Query: 490 RGPAPPWLP 498
+GP PW P
Sbjct: 210 QGPGGPWRP 218
>gi|31543417 phospholipid scramblase 3 [Homo sapiens]
Length = 295
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 439 PEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPL-TLIPGPVEPFSIVTMPGP--RGPAPP 495
P+G AP P+ PG PEP P G P+ +P P F++ PGP G A P
Sbjct: 7 PKGYAPSPPPPYPVT-PGYPEPALHPGPGQAPVPAQVPAPAPGFALFPSPGPVALGSAAP 65
Query: 496 WLPSP 500
+LP P
Sbjct: 66 FLPLP 70
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 39.7 bits (91), Expect = 0.007
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 434 SCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGP-----EPLTLIPGPVEP-FSIVTMP 487
+ P AP P P LP P PPP P PL P P P VT+P
Sbjct: 667 AAVAAPSVLAPTLPLPPPPGFPPLPPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVP 726
Query: 488 GPRGPAPPWLPSP 500
P PAPP +P P
Sbjct: 727 PPPLPAPPGVPPP 739
Score = 32.7 bits (73), Expect = 0.80
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 429 TGASC-SCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMP 487
T A C VV GAA + +L P LP PPP G PL P P P MP
Sbjct: 652 TSADCPKPMVVTPGAAAVAA--PSVLAPTLP---LPPPPGFPPLPPPPPPPPPQPGFPMP 706
Query: 488 GPRGPAPP 495
P P PP
Sbjct: 707 PPLPPPPP 714
Score = 31.6 bits (70), Expect = 1.8
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 439 PEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLP 498
PE A E PL PE + PEP ++P P++P +P PR PP P
Sbjct: 1241 PEPPAKEVEARPPLSPERAPEHDLE--VEPEPPMMLPLPLQP----PLPPPR---PPRPP 1291
Query: 499 SPIGEEE 505
SP E E
Sbjct: 1292 SPPPEPE 1298
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 39.3 bits (90), Expect = 0.009
Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 439 PEGAAPECSCGDPLLDPGLPEPEAPPPAG--------PEPLTLIPGPVEPFSIVTMPGPR 490
P P S G PL P P P PPP+ P PL P P P P P
Sbjct: 667 PAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPP 726
Query: 491 GPAPP 495
G APP
Sbjct: 727 GLAPP 731
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 451 PLLDPGL----PEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPI 501
P L GL P P PP + PL P P P + P GP PP P P+
Sbjct: 656 PPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPP---LPPPSSAGPPPPPPPPPL 707
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 39.3 bits (90), Expect = 0.009
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 439 PEGAAPECSCGDPLL--DPGLPEPEAPPPAGPEPLTLIP---------GPVEPFSIVTMP 487
P G + G P L +PGLP P P G + +P GP +P
Sbjct: 76 PSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLP 135
Query: 488 GPRG-PAPPWLPSPIG 502
GPRG P PP +P P G
Sbjct: 136 GPRGPPGPPGIPGPAG 151
Score = 36.6 bits (83), Expect = 0.056
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPP 495
P +PGLP P+ P G P +PGPV P MPG G A P
Sbjct: 399 PKGNPGLPGPKGDPGVGGPPG--LPGPVGPAGAKGMPGHNGEAGP 441
Score = 29.3 bits (64), Expect = 8.9
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 439 PEGAAPECSCGDPLLDPGLP-------EPEAPPPAGPEPL--------TLIPGPVEPFSI 483
P GA P+ PG+P +P +P P GP + T PGP P
Sbjct: 441 PRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGH 500
Query: 484 VTMPGPRGPAPPWLPSPIGE 503
PG GP P P P G+
Sbjct: 501 SGEPGLPGPPGP--PGPPGQ 518
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 38.9 bits (89), Expect = 0.011
Identities = 35/124 (28%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 381 GLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRKNSCVSEASTGASCSCAVVPE 440
GL GP+ G Q + P G G VA S ++ G +
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIA----GAPTQYPPGRGGPPPPMGR 181
Query: 441 GAAPECSCGDPLLDPGLPEPEAPP----PAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPW 496
GA P G P PG+ P PP P P+ + P + P PG RGP PP
Sbjct: 182 GAPPPGMMGPP---PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP----PPPGMRGPPPPG 234
Query: 497 LPSP 500
+ P
Sbjct: 235 MRPP 238
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 38.9 bits (89), Expect = 0.011
Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 21/142 (14%)
Query: 385 PMGEAPGDFL---QRLLPAGAGMVAGGPLGRRLSFLLR-KNSCVSEASTGASCSCAVVPE 440
PM APG L L P A LG L L+ K V A+ G + A V
Sbjct: 209 PMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAV 268
Query: 441 GAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTL----IPGPVEPFSIVTM------PGPR 490
GA G ++ P LP A P PEPL L + G + P I + P P
Sbjct: 269 GAGG-APAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPP 327
Query: 491 GPAPP------WLPSPIGEEEE 506
P PP +P P+GE+++
Sbjct: 328 RPEPPPGLMALEVPEPLGEDKK 349
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 38.9 bits (89), Expect = 0.011
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 437 VVPEGAAPECSCGDPLLDPGLPEPE---APPPAGPEPLTLIPGPVEPFSIVTMPGPRGPA 493
++P A P G P PGLP P PPP P PGP+ P S+ + GP P
Sbjct: 328 MLPFPAQPPVVEGPP--PPGLPPPPPILTPPPVNLRPPVPPPGPLPP-SLPPVTGPPPPL 384
Query: 494 PPWLPS 499
PP PS
Sbjct: 385 PPLQPS 390
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 458 PEPEAPPPAG--PEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSP 500
P E PPP G P P L P PV V PGP P+ P + P
Sbjct: 336 PVVEGPPPPGLPPPPPILTPPPVNLRPPVPPPGPLPPSLPPVTGP 380
>gi|29789008 Huntingtin interacting protein C isoform 2 [Homo
sapiens]
Length = 858
Score = 38.9 bits (89), Expect = 0.011
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPP 495
P + PG+ P PP P PLT IPG V P MPG PA P
Sbjct: 26 PPMPPGILPPMLPPMGAPPPLTQIPGMVPPM----MPGMLMPAVP 66
>gi|72534686 Huntingtin interacting protein C isoform 1 [Homo
sapiens]
Length = 871
Score = 38.9 bits (89), Expect = 0.011
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPP 495
P + PG+ P PP P PLT IPG V P MPG PA P
Sbjct: 32 PPMPPGILPPMLPPMGAPPPLTQIPGMVPPM----MPGMLMPAVP 72
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 38.5 bits (88), Expect = 0.015
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 379 LDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRKNSCVSEASTGASC---SC 435
L L P +AP LL A P+ + F + VS ++T S S
Sbjct: 417 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPV--QAPFSPPASPPVSPSATPPSQAPPSL 474
Query: 436 AVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLI-PGPVEPFSIVTMPGPRGPAP 494
A P P P+ P P+APPP PL L P P P ++ T P P+P
Sbjct: 475 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSP 534
Query: 495 P 495
P
Sbjct: 535 P 535
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 442 AAPECSCGDPLLDPGL----PEPEAPPPAGPEPLTLIPGPVE--------------PFSI 483
A P PL P L P P+APP PL +P P P S
Sbjct: 495 ATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSP 554
Query: 484 VTMPGPRGPAPPWLPSPI 501
+ P P+ APP L +P+
Sbjct: 555 LATPPPQ--APPVLAAPL 570
Score = 29.6 bits (65), Expect = 6.8
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGP--VEPFSIVTMPGPRGP 492
PL P P+APP PL P P P S + P P+ P
Sbjct: 385 PLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAP 428
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 38.5 bits (88), Expect = 0.015
Identities = 38/127 (29%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 379 LDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRKNSCVSEASTGASC---SC 435
L L P +AP LL A P+ + F + VS ++T S S
Sbjct: 642 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPV--QAPFSPPASPPVSPSATPPSQAPPSL 699
Query: 436 AVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGP--VEPFSIVTMPGPRGPA 493
A P P P+ P P+APPP PL + P P P S P PR
Sbjct: 700 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPR--V 757
Query: 494 PPWLPSP 500
PP L +P
Sbjct: 758 PPLLAAP 764
Score = 33.9 bits (76), Expect = 0.36
Identities = 26/54 (48%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 451 PLLDPGLPEPEAPPP----AGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSP 500
PL P L P P P A P PLT P P P SI T P P+ APP L SP
Sbjct: 552 PLTTPHLETPPCPAPCPLQAPPSPLTT-PPPETPSSIAT-PPPQ--APPALASP 601
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/65 (27%), Positives = 23/65 (35%)
Query: 436 AVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPP 495
A P P P+ P P PP PL + P P + + P APP
Sbjct: 731 AAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPP 790
Query: 496 WLPSP 500
L +P
Sbjct: 791 ALATP 795
Score = 32.0 bits (71), Expect = 1.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 458 PEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSP 500
P P+APP PL +P P P S + P P+ APP L P
Sbjct: 590 PPPQAPPALASPPLQGLPSP--PLSPLATPPPQ--APPXLALP 628
Score = 29.6 bits (65), Expect = 6.8
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 460 PEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLP 498
P +PP A P PL P P P S+ T+P P P P
Sbjct: 332 PPSPPLATPLPLAP-PSPSAPPSLQTLPSPPATPPSQAP 369
Score = 29.6 bits (65), Expect = 6.8
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGP--VEPFSIVTMPGPRGP 492
PL P P+APP PL P P P S + P P+ P
Sbjct: 610 PLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAP 653
Score = 29.6 bits (65), Expect = 6.8
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 436 AVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVE--------------PF 481
A P P P+ P P+APP PL +P P P
Sbjct: 762 AAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPM 821
Query: 482 SIVTMPGPRGPAPPWLPSPI 501
S + P P+ APP L +P+
Sbjct: 822 SPLATPPPQ--APPVLAAPL 839
Score = 29.3 bits (64), Expect = 8.9
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 442 AAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPP 495
A P PL P L P +PP + P + P P P + P P+PP
Sbjct: 720 ATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPP 773
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 38.5 bits (88), Expect = 0.015
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 379 LDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRKNSCVSEASTGASC---SC 435
L L P +AP LL A P+ + F + VS ++T S S
Sbjct: 378 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPV--QAPFSPPASPPVSPSATPPSQAPPSL 435
Query: 436 AVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLI-PGPVEPFSIVTMPGPRGPAP 494
A P P P+ P P+APPP PL L P P P ++ T P P+P
Sbjct: 436 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSP 495
Query: 495 P 495
P
Sbjct: 496 P 496
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 442 AAPECSCGDPLLDPGL----PEPEAPPPAGPEPLTLIPGPVE--------------PFSI 483
A P PL P L P P+APP PL +P P P S
Sbjct: 456 ATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSP 515
Query: 484 VTMPGPRGPAPPWLPSPI 501
+ P P+ APP L +P+
Sbjct: 516 LATPPPQ--APPVLAAPL 531
Score = 29.6 bits (65), Expect = 6.8
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGP--VEPFSIVTMPGPRGP 492
PL P P+APP PL P P P S + P P+ P
Sbjct: 346 PLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAP 389
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 38.5 bits (88), Expect = 0.015
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 428 STGASCSCAVVP----EGAAPECSCGDPLLDPGLPEPEAPP-PAGPEPLTLIPGPVEPFS 482
S G+ C C+ + E P G P L PG P PE PP P G + IPGP P
Sbjct: 33 SPGSKCDCSGIKGEKGERGFPGLE-GHPGL-PGFPGPEGPPGPRGQKGDDGIPGPPGPKG 90
Query: 483 IVTMPG-PRGPAPPWLPSPIGEE 504
I PG P P P LP G +
Sbjct: 91 IRGPPGLPGFPGTPGLPGMPGHD 113
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG------------PAPPWLP 498
P D G P P PP G L +PGP PGP G P PP +P
Sbjct: 773 PKGDRGFPGPPGPP--GRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Query: 499 SPIGE 503
PIG+
Sbjct: 831 GPIGQ 835
Score = 34.7 bits (78), Expect = 0.21
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 454 DPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG-PAPPWLPSPIGE 503
+PG+P P P GP+ IPGP G G P PP P P GE
Sbjct: 700 EPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750
Score = 33.9 bits (76), Expect = 0.36
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG----PAPPWLPSPIG 502
P +PG P P P G T IPGP+ P PGP G P PP LP P G
Sbjct: 169 PKGNPGYPGP--PGIQGLPGPTGIPGPIGP------PGPPGLMGPPGPPGLPGPKG 216
Score = 33.9 bits (76), Expect = 0.36
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG-PAPPWL--PSPIGE 503
P+ PGLP P GP IPGP+ + +PG +G P PP L P P GE
Sbjct: 809 PMGPPGLPGIGVQGPPGPP---GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGE 861
Score = 31.6 bits (70), Expect = 1.8
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 454 DPGLPE-PEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPIGE 503
DPGLP P P GP +PG P + GP P PP LP P G+
Sbjct: 1328 DPGLPGVPGFPGMKGPSG---VPGSAGPEGEPGLIGP--PGPPGLPGPSGQ 1373
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 455 PGLPEPEAPPPAGPEPLTLIPGPVEPFSIV--TMPGPRG----PAPP---WLPSPIG 502
PG P + PP GP + + G EP SI+ ++PGP+G P PP LP P G
Sbjct: 137 PGFPGLQGPP--GPPGIPGMKG--EPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTG 189
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 449 GDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPA-------------PP 495
GDP PGL P P G + PGP+ P +PG G + PP
Sbjct: 846 GDPG-PPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPP 904
Query: 496 WLPSPIG 502
P P+G
Sbjct: 905 GPPGPLG 911
>gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]
Length = 390
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 435 CAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGP-VEPFSIVTMPGPRGPA 493
CA + AP P LD P PE PP P +P P +EPF+ P P GP
Sbjct: 198 CAEHAQSPAPP---PPPALDREPPAPERPPEVDPASAPGLPFPLLEPFT-TPAPAPTGPF 253
Query: 494 PPWL-PSPIG 502
P+L P+P G
Sbjct: 254 LPYLNPAPFG 263
>gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]
Length = 312
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 435 CAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGP-VEPFSIVTMPGPRGPA 493
CA + AP P LD P PE PP P +P P +EPF+ P P GP
Sbjct: 198 CAEHAQSPAPP---PPPALDREPPAPERPPEVDPASAPGLPFPLLEPFT-TPAPAPTGPF 253
Query: 494 PPWL-PSPIG 502
P+L P+P G
Sbjct: 254 LPYLNPAPFG 263
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 38.5 bits (88), Expect = 0.015
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 428 STGASCSCAVVP----EGAAPECSCGDPLLDPGLPEPEAPP-PAGPEPLTLIPGPVEPFS 482
S G+ C C+ + E P G P L PG P PE PP P G + IPGP P
Sbjct: 33 SPGSKCDCSGIKGEKGERGFPGLE-GHPGL-PGFPGPEGPPGPRGQKGDDGIPGPPGPKG 90
Query: 483 IVTMPG-PRGPAPPWLPSPIGEE 504
I PG P P P LP G +
Sbjct: 91 IRGPPGLPGFPGTPGLPGMPGHD 113
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG------------PAPPWLP 498
P D G P P PP G L +PGP PGP G P PP +P
Sbjct: 773 PKGDRGFPGPPGPP--GRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Query: 499 SPIGE 503
PIG+
Sbjct: 831 GPIGQ 835
Score = 34.7 bits (78), Expect = 0.21
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 454 DPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG-PAPPWLPSPIGE 503
+PG+P P P GP+ IPGP G G P PP P P GE
Sbjct: 700 EPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750
Score = 33.9 bits (76), Expect = 0.36
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG----PAPPWLPSPIG 502
P +PG P P P G T IPGP+ P PGP G P PP LP P G
Sbjct: 169 PKGNPGYPGP--PGIQGLPGPTGIPGPIGP------PGPPGLMGPPGPPGLPGPKG 216
Score = 33.9 bits (76), Expect = 0.36
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG-PAPPWL--PSPIGE 503
P+ PGLP P GP IPGP+ + +PG +G P PP L P P GE
Sbjct: 809 PMGPPGLPGIGVQGPPGPP---GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGE 861
Score = 31.6 bits (70), Expect = 1.8
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 454 DPGLPE-PEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPIGE 503
DPGLP P P GP +PG P + GP P PP LP P G+
Sbjct: 1322 DPGLPGVPGFPGMKGPSG---VPGSAGPEGEPGLIGP--PGPPGLPGPSGQ 1367
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 455 PGLPEPEAPPPAGPEPLTLIPGPVEPFSIV--TMPGPRG----PAPP---WLPSPIG 502
PG P + PP GP + + G EP SI+ ++PGP+G P PP LP P G
Sbjct: 137 PGFPGLQGPP--GPPGIPGMKG--EPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTG 189
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 449 GDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPA-------------PP 495
GDP PGL P P G + PGP+ P +PG G + PP
Sbjct: 846 GDPG-PPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPP 904
Query: 496 WLPSPIG 502
P P+G
Sbjct: 905 GPPGPLG 911
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 38.5 bits (88), Expect = 0.015
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 428 STGASCSCAVVP----EGAAPECSCGDPLLDPGLPEPEAPP-PAGPEPLTLIPGPVEPFS 482
S G+ C C+ + E P G P L PG P PE PP P G + IPGP P
Sbjct: 33 SPGSKCDCSGIKGEKGERGFPGLE-GHPGL-PGFPGPEGPPGPRGQKGDDGIPGPPGPKG 90
Query: 483 IVTMPG-PRGPAPPWLPSPIGEE 504
I PG P P P LP G +
Sbjct: 91 IRGPPGLPGFPGTPGLPGMPGHD 113
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG------------PAPPWLP 498
P D G P P PP G L +PGP PGP G P PP +P
Sbjct: 773 PKGDRGFPGPPGPP--GRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Query: 499 SPIGE 503
PIG+
Sbjct: 831 GPIGQ 835
Score = 34.7 bits (78), Expect = 0.21
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 454 DPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG-PAPPWLPSPIGE 503
+PG+P P P GP+ IPGP G G P PP P P GE
Sbjct: 700 EPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGE 750
Score = 33.9 bits (76), Expect = 0.36
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG----PAPPWLPSPIG 502
P +PG P P P G T IPGP+ P PGP G P PP LP P G
Sbjct: 169 PKGNPGYPGP--PGIQGLPGPTGIPGPIGP------PGPPGLMGPPGPPGLPGPKG 216
Score = 33.9 bits (76), Expect = 0.36
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRG-PAPPWL--PSPIGE 503
P+ PGLP P GP IPGP+ + +PG +G P PP L P P GE
Sbjct: 809 PMGPPGLPGIGVQGPPGPP---GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGE 861
Score = 31.6 bits (70), Expect = 1.8
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 454 DPGLPE-PEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPIGE 503
DPGLP P P GP +PG P + GP P PP LP P G+
Sbjct: 1325 DPGLPGVPGFPGMKGPSG---VPGSAGPEGEPGLIGP--PGPPGLPGPSGQ 1370
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 455 PGLPEPEAPPPAGPEPLTLIPGPVEPFSIV--TMPGPRG----PAPP---WLPSPIG 502
PG P + PP GP + + G EP SI+ ++PGP+G P PP LP P G
Sbjct: 137 PGFPGLQGPP--GPPGIPGMKG--EPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTG 189
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 449 GDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPA-------------PP 495
GDP PGL P P G + PGP+ P +PG G + PP
Sbjct: 846 GDPG-PPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPP 904
Query: 496 WLPSPIG 502
P P+G
Sbjct: 905 GPPGPLG 911
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 38.5 bits (88), Expect = 0.015
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 435 CAVVPEGAAPECSCGD-PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPA 493
CA +P G +P G P PG P PPP P P ++P P P P GP
Sbjct: 524 CASIPGGPSPGAPGGPFPSSVPGSLLPPPPPP--PLPGGMLPPPPPPLP------PGGPP 575
Query: 494 PPWLPSPIG 502
PP P P+G
Sbjct: 576 PPPGPPPLG 584
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 38.1 bits (87), Expect = 0.019
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 427 ASTGASCSCAVVPEGAAPECSCGDPLLDPGLP----EPEAPPPAGPEPLTLI--PGPVEP 480
++T ++ P G P P P P P PPP GP P + PGP P
Sbjct: 56 SATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGP 115
Query: 481 FSIVTMPGPRGPAPPWLPS 499
+ MP P P P P+
Sbjct: 116 YPTPNMPFPELPRPYGAPT 134
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 455 PGLPEPEAPPPAGPEPLTLIP----GPVEPFSIVTMPGPRG--PAPPWLPSP 500
P P P+AP A P P +P GP P+ P P G P P P+P
Sbjct: 175 PAPPPPQAPGAAPPVPWGTVPPGAWGPPAPY-----PAPTGSYPTPGLYPTP 221
Score = 29.3 bits (64), Expect = 8.9
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 451 PLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPIG 502
P PG P P PPP P +P P PG GP P+ P+P G
Sbjct: 167 PYPSPG-PYPAPPPPQAPGAAPPVPWGTVP------PGAWGPPAPY-PAPTG 210
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 37.7 bits (86), Expect = 0.025
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 453 LDPGLPEPEAPPP-AGPEPLTLIPGPVEPFSIVTMPGPRGPAPP 495
L P P P PPP A P PLT+IP PV + P P P PP
Sbjct: 67 LSPPAPPPAPPPPLATPAPLTVIPIPV----VTNSPQPLPPPPP 106
Score = 30.0 bits (66), Expect = 5.2
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 451 PLLDPGLPEPEA--PPPAGPEPLTLIPGPVEPFSIVTMPG------PRGPAPPWL 497
P P LP+ +A PP P+PL +P PV +I PG P+ P PP L
Sbjct: 144 PTPAPLLPDSKATIPPNGSPKPLQPLPTPV--LTIAPHPGVQPQLAPQQPPPPTL 196
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.025
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 381 GLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRKNSCVSEASTGASCSCAVVPE 440
GL GP+ G Q + P G G VA + V+ ++ A P
Sbjct: 126 GLAGPVRGVGGPSQQVMTPQGRGTVAA--------------AAVAATASIAGAPTQYPPG 171
Query: 441 GAAPECSCGDPLLDPGL--PEPEAPPPAGPEPLTLIPGPVEPFSI------VTMPGPRGP 492
P G PG+ P P PP GP P+ L P P + PG RGP
Sbjct: 172 RGTPPPPVGRATPPPGIMAPPPGMRPPMGP-PIGLPPARGTPIGMPPPGMRPPPPGIRGP 230
Query: 493 APPWLPSP 500
PP + P
Sbjct: 231 PPPGMRPP 238
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,545,292
Number of Sequences: 37866
Number of extensions: 1232782
Number of successful extensions: 11671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 8417
Number of HSP's gapped (non-prelim): 2870
length of query: 509
length of database: 18,247,518
effective HSP length: 107
effective length of query: 402
effective length of database: 14,195,856
effective search space: 5706734112
effective search space used: 5706734112
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.