PRPF40B 25058

Name: PRPF40B	Sequence: fasta or formatted (858aa)		NCBI GI: 29789008
Description: Huntingtin interacting protein C isoform 2		Referenced in: Additional Brain Proteins Cytoskeleton
Other entries for this name: alt prot [871aa] Huntingtin interacting protein C isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 64 3 C cysteine 0.6 5 1 D aspartate 4.5 39 2 E glutamate 11.7 100 5 F phenylalanine 3.1 27 2 G glycine 5.1 44 2 H histidine 2.4 21 3 I isoleucine 2.0 17 2 K lysine 7.7 66 3 L leucine 8.7 75 3 M methionine 2.6 22 2 N asparagine 2.1 18 2 P proline 9.4 81 3 Q glutamine 6.8 58 4 R arginine 7.8 67 4 S serine 7.3 63 3 T threonine 4.1 35 2 V valine 3.6 31 2 W tryptophan 1.3 11 1 Y tyrosine 1.6 14 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Huntingtin interacting protein C isoform 2 PRPF40B 0.996 Huntingtin interacting protein C isoform 1 PRPF40A 0.535 formin binding protein 3 TCERG1 0.066 transcription elongation regulator 1 isoform 2 [Homo... TCERG1 0.061 transcription elongation regulator 1 isoform 1 [Homo... RBM25 0.029 RNA binding motif protein 25 PELP1 0.028 proline, glutamic acid and leucine rich protein 1 [... TCHH 0.026 trichohyalin TCERG1L 0.025 transcription elongation regulator 1-like WBP11 0.023 WW domain binding protein 11 YLPM1 0.023 YLP motif containing 1 RBM26 0.022 RNA binding motif protein 26 SF3A2 0.021 splicing factor 3a, subunit 2 WBP4 0.020 WW domain-containing binding protein 4 ZNF207 0.020 zinc finger protein 207 isoform a SF3B2 0.020 splicing factor 3B subunit 2 C6orf132 0.019 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.019 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.019 PREDICTED: hypothetical protein LOC647024 SFRS15 0.019 splicing factor, arginine/serine-rich 15 isoform 2 ... SFRS15 0.019 splicing factor, arginine/serine-rich 15 isoform 1 [... GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform c GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform a GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform b GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform b CPSF6 0.019 cleavage and polyadenylation specific factor 6, 68 ... MLL4 0.019 myeloid/lymphoid or mixed-lineage leukemia 4 FMN1 0.019 formin 1 DIAPH1 0.019 diaphanous 1 isoform 2 DIAPH1 0.019 diaphanous 1 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.