PRPF40B 35307

Name: PRPF40B	Sequence: fasta or formatted (871aa)		NCBI GI: 72534686
Description: Huntingtin interacting protein C isoform 1		Referenced in: Additional Brain Proteins Cytoskeleton
Other entries for this name: alt prot [858aa] Huntingtin interacting protein C isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 64 3 C cysteine 0.7 6 1 D aspartate 4.6 40 2 E glutamate 11.6 101 5 F phenylalanine 3.3 29 2 G glycine 5.2 45 2 H histidine 2.4 21 3 I isoleucine 2.0 17 2 K lysine 7.6 66 3 L leucine 8.6 75 3 M methionine 2.8 24 2 N asparagine 2.1 18 2 P proline 9.6 84 3 Q glutamine 6.7 58 4 R arginine 7.8 68 4 S serine 7.2 63 3 T threonine 4.0 35 2 V valine 3.7 32 2 W tryptophan 1.3 11 1 Y tyrosine 1.6 14 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Huntingtin interacting protein C isoform 1 PRPF40B 0.979 Huntingtin interacting protein C isoform 2 PRPF40A 0.536 formin binding protein 3 TCERG1 0.066 transcription elongation regulator 1 isoform 2 [Homo... TCERG1 0.061 transcription elongation regulator 1 isoform 1 [Homo... PELP1 0.028 proline, glutamic acid and leucine rich protein 1 [... TCHH 0.027 trichohyalin RBM25 0.027 RNA binding motif protein 25 SFRS15 0.025 splicing factor, arginine/serine-rich 15 isoform 3 ... TCERG1L 0.025 transcription elongation regulator 1-like WBP11 0.024 WW domain binding protein 11 SFRS15 0.023 splicing factor, arginine/serine-rich 15 isoform 2 ... SFRS15 0.023 splicing factor, arginine/serine-rich 15 isoform 1 [... YLPM1 0.023 YLP motif containing 1 MLL4 0.022 myeloid/lymphoid or mixed-lineage leukemia 4 ZNF207 0.021 zinc finger protein 207 isoform a FMN1 0.021 formin 1 FMN2 0.021 formin 2 DIAPH1 0.020 diaphanous 1 isoform 2 DIAPH1 0.020 diaphanous 1 isoform 1 CPSF6 0.020 cleavage and polyadenylation specific factor 6, 68 ... C6orf132 0.020 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.020 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.020 PREDICTED: hypothetical protein LOC647024 WBP4 0.020 WW domain-containing binding protein 4 WASF2 0.019 WAS protein family, member 2 PCLO 0.019 piccolo isoform 2 PCLO 0.019 piccolo isoform 1 SF3B2 0.019 splicing factor 3B subunit 2 GIGYF2 0.019 GRB10 interacting GYF protein 2 isoform c Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.