Guide to the Human Genome
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Name: BEST1 Sequence: fasta or formatted (585aa) NCBI GI: 4759310
Description:

bestrophin 1 isoform 1

Referenced in:

Chloride Channels

Other entries for this name:
alt prot [604aa] bestrophin 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         35           2
 C cysteine            0.9          5           1
 D aspartate           4.4         26           4
 E glutamate           6.5         38           2
 F phenylalanine       5.5         32           3
 G glycine             4.4         26           2
 H histidine           3.1         18           2
 I isoleucine          3.9         23           2
 K lysine              5.0         29           2
 L leucine            12.5         73           3
 M methionine          2.7         16           1
 N asparagine          4.3         25           1
 P proline             6.7         39           2
 Q glutamine           4.8         28           2
 R arginine            5.1         30           2
 S serine              6.7         39           2
 T threonine           5.1         30           2
 V valine              5.8         34           2
 W tryptophan          2.6         15           2
 Y tyrosine            4.1         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bestrophin 1 isoform 1 
BEST1                 0.892   bestrophin 1 isoform 2 
BEST3                 0.412   vitelliform macular dystrophy 2-like 3 isoform 1 [H...
BEST2                 0.401   vitelliform macular dystrophy 2-like 1 
BEST4                 0.367   bestrophin 4 
BEST3                 0.135   vitelliform macular dystrophy 2-like 3 isoform 2 [H...
CYTSA                 0.009   cytospin A 
CYTSA                 0.009   cytospin A 
ATE1                  0.009   arginyltransferase 1 isoform 1 
CXorf66               0.008   hypothetical protein LOC347487 
USP10                 0.008   ubiquitin specific protease 10 
SPEG                  0.008   SPEG complex locus 
EIF4G1                0.006   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.006   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.006   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.006   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.006   eukaryotic translation initiation factor 4 gamma, 1 ...
IQSEC2                0.005   IQ motif and Sec7 domain 2 isoform1 
KCNH6                 0.004   potassium voltage-gated channel, subfamily H, member...
PCLO                  0.004   piccolo isoform 2 
PCLO                  0.004   piccolo isoform 1 
TFEB                  0.004   transcription factor EB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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