Guide to the Human Genome
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Name: KDM3A Sequence: fasta or formatted (1321aa) NCBI GI: 20357522
Description:

jumonji domain containing 1A

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Skin and Related Tissues

Other entries for this name:
alt mRNA [1321aa] jumonji domain containing 1A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         77           2
 C cysteine            3.0         39           2
 D aspartate           5.5         73           2
 E glutamate           6.4         84           3
 F phenylalanine       3.1         41           2
 G glycine             5.4         71           2
 H histidine           2.5         33           2
 I isoleucine          4.3         57           2
 K lysine              8.5        112           2
 L leucine             9.5        126           2
 M methionine          1.3         17           2
 N asparagine          5.5         72           3
 P proline             6.6         87           2
 Q glutamine           4.5         59           2
 R arginine            4.3         57           2
 S serine              8.4        111           2
 T threonine           4.8         64           2
 V valine              7.3         96           2
 W tryptophan          1.8         24           1
 Y tyrosine            1.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji domain containing 1A 
KDM3A                 1.000   jumonji domain containing 1A 
KDM3B                 0.379   jumonji domain containing 1B 
JMJD1C                0.277   jumonji domain containing 1C isoform b 
JMJD1C                0.274   jumonji domain containing 1C isoform a 
HR                    0.076   hairless protein isoform a 
HR                    0.057   hairless protein isoform b 
SRRM2                 0.006   splicing coactivator subunit SRm300 
SYTL2                 0.005   synaptotagmin-like 2 isoform d 
GTSE1                 0.004   G-2 and S-phase expressed 1 
REXO1                 0.004   transcription elongation factor B polypeptide 3 bin...
JMJD4                 0.004   jumonji domain containing 4 isoform 2 
JMJD4                 0.004   jumonji domain containing 4 isoform 1 
SYTL2                 0.004   synaptotagmin-like 2 isoform i 
SYTL2                 0.004   synaptotagmin-like 2 isoform g 
NEFH                  0.004   neurofilament, heavy polypeptide 200kDa 
KIAA1107              0.004   hypothetical protein LOC23285 
NR3C2                 0.004   nuclear receptor subfamily 3, group C, member 2 [Ho...
MTMR7                 0.004   myotubularin related protein 7 
ALG9                  0.004   asparagine-linked glycosylation 9 protein isoform a...
ALG9                  0.004   asparagine-linked glycosylation 9 protein isoform d...
ALG9                  0.004   asparagine-linked glycosylation 9 protein isoform c...
ALG9                  0.004   asparagine-linked glycosylation 9 protein isoform b...
TP53BP2               0.004   tumor protein p53 binding protein, 2 isoform 1 [Hom...
TP53BP2               0.004   tumor protein p53 binding protein, 2 isoform 2 
HOMEZ                 0.003   homeodomain leucine zipper protein 
APC                   0.003   adenomatous polyposis coli 
APC                   0.003   adenomatous polyposis coli 
APC                   0.003   adenomatous polyposis coli 
AFF1                  0.003   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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