Guide to the Human Genome
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Search of human proteins with 239756815

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756815 PREDICTED: hypothetical protein [Homo sapiens]
         (196 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756815 PREDICTED: hypothetical protein [Homo sapiens]           410   e-115
gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo ...   410   e-115
gi|239745782 PREDICTED: hypothetical protein XP_002343553 [Homo ...   410   e-115
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         42   3e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             38   0.006
gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo ...    37   0.014
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]             35   0.031
gi|239754474 PREDICTED: similar to mucin [Homo sapiens]                35   0.031
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        35   0.031
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ...    35   0.041
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ...    35   0.041
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ...    35   0.041
gi|239508698 PREDICTED: similar to mucin [Homo sapiens]                35   0.041
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]            35   0.053
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a...    34   0.070
gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b...    34   0.070
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    34   0.091
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    34   0.091
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            33   0.12 
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ...    33   0.12 
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ...    33   0.16 
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ...    33   0.16 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    33   0.16 
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]         33   0.16 
gi|56606114 trichohyalin-like 1 [Homo sapiens]                         33   0.16 
gi|153285461 fibroblast growth factor 2 [Homo sapiens]                 33   0.20 
gi|199559779 coiled-coil domain containing 8 [Homo sapiens]            33   0.20 
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom...    32   0.26 
gi|66529407 tensin [Homo sapiens]                                      32   0.26 

>gi|239756815 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score =  410 bits (1055), Expect = e-115
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
           MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG
Sbjct: 1   MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60

Query: 61  PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
           PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ
Sbjct: 61  PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120

Query: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
           GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP
Sbjct: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180

Query: 181 SQPPLSGYKTPNKRNL 196
           SQPPLSGYKTPNKRNL
Sbjct: 181 SQPPLSGYKTPNKRNL 196


>gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo
           sapiens]
          Length = 196

 Score =  410 bits (1055), Expect = e-115
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
           MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG
Sbjct: 1   MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60

Query: 61  PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
           PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ
Sbjct: 61  PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120

Query: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
           GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP
Sbjct: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180

Query: 181 SQPPLSGYKTPNKRNL 196
           SQPPLSGYKTPNKRNL
Sbjct: 181 SQPPLSGYKTPNKRNL 196


>gi|239745782 PREDICTED: hypothetical protein XP_002343553 [Homo
           sapiens]
          Length = 196

 Score =  410 bits (1055), Expect = e-115
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
           MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG
Sbjct: 1   MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60

Query: 61  PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
           PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ
Sbjct: 61  PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120

Query: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
           GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP
Sbjct: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180

Query: 181 SQPPLSGYKTPNKRNL 196
           SQPPLSGYKTPNKRNL
Sbjct: 181 SQPPLSGYKTPNKRNL 196


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 70  PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPE 129
           P  +R +   +R +P+ +  H  G+   R  +              R     K  SP+P 
Sbjct: 640 PPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTR------------EARSPQPNKRHSPSPR 687

Query: 130 PAGGEASSSPAPEERGPSHCSQANVSPASCTLP 162
           P   + SSSP P  RG S   Q   SP+  T P
Sbjct: 688 PRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRP 720



 Score = 30.4 bits (67), Expect = 1.0
 Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 15/162 (9%)

Query: 49  RCSQPRQPRSWGPRVNAFALWPATRR-----PAHTGRRVTPARACS---HTSGTGAGRKR 100
           R   P +  S  PR       P  RR     P  T RR +P+ A       + T   R+R
Sbjct: 521 RRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRR 580

Query: 101 KGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEER-GPSHCSQANVS---- 155
                  +R  S  R      +  SP+P P    AS  P P+ R  PS   +  VS    
Sbjct: 581 TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640

Query: 156 PASCTLP-GKTRIHSLCREGNAGRTPSQPPLSGYK-TPNKRN 195
           P   + P  K R  SL  +   G +PS+         PNKR+
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRH 682



 Score = 27.7 bits (60), Expect = 6.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 98  RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEER 144
           R+RK    S +R  S  RRE+ +   RSP         S SPAPE++
Sbjct: 173 RRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTK--SRSPSPAPEKK 217



 Score = 27.7 bits (60), Expect = 6.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 89  SHTSGTGAGRKRKGGETSFQREWSENRREKGQG----KIRSPAPEPAGGEASSSPAPEER 144
           SH      GR+R+    S     S  +R+K       + RSP+P P     S SPAP  R
Sbjct: 510 SHVKNGEVGRRRRHSP-SRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPR 568


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 51  SQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQRE 110
           S P +P S  PRV   A   A   PA      +P  A    S  G G +  GG  + +R 
Sbjct: 333 SPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSA---PSSQGRGGRAAGG--AGRRR 387

Query: 111 WSENRREKGQGKIRSPA------PEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGK 164
               RR + +    +P       P PA    SS      R  S       +P     PG 
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447

Query: 165 TRIHSLCREGNAGRTPSQPP 184
            R H     G+  R   +PP
Sbjct: 448 ERGHG----GHGKRAKERPP 463


>gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
           sapiens]
          Length = 474

 Score = 36.6 bits (83), Expect = 0.014
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 91  TSGTGA---GRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGP 146
           T G+GA    R+R+GG  +  R  SE RR +G G+ R P P   G  +   PAP ER P
Sbjct: 420 TDGSGALPLRRQRRGGSFNLCRCSSE-RRPRGPGRRRHPDP---GTSSQPRPAPRERAP 474


>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
          Length = 340

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 102 GGETSFQREWSENRREKGQGKIRSPAPEPAGG---EASSSPAPEERGPSHCSQANV---- 154
           G  T F  EW   +REK + K   P P P GG   +A+  P     G    + AN     
Sbjct: 14  GSTTDFLEEWKA-KREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNN 72

Query: 155 ----SPASCTLPGKTRIHSLCREGNAGRTPSQP 183
               +PA+  +PG   ++  C  G+A  T + P
Sbjct: 73  LPGGAPAAPAVPGPGGVN--CAVGSAMLTRAAP 103


>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
          Length = 417

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 98  RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGE-----ASSSPAPEERGPSHCSQA 152
           R RK  E+S   +W EN + K     + P  +PAGG      + SSP+ +++G     + 
Sbjct: 11  RLRKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREE- 69

Query: 153 NVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPNKRNL 196
                +   P   +  +  RE  A   P  P  SG++T  ++ L
Sbjct: 70  ----EAAAAPAADQQRAQDREEEAAAAP-VPTSSGHRTEKRKRL 108


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 35.4 bits (80), Expect = 0.031
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 51  SQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPAR-ACSHTSGTGAGRKRKGGETSFQR 109
           S+ R P+ W  R  +   W  +R P   GR  +P R   S +  T    +R+G   S +R
Sbjct: 506 SRSRSPQ-WR-RSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNT----QRRGRSRSARR 559

Query: 110 EWSENRREKGQGKIRSPAPEPAGGEASSSPA---PEERGPSHCSQANVSPASCTLPGKTR 166
             S +R    +G+ RS  P   G   S +PA      R P+     + +PA     G++R
Sbjct: 560 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR---RGRSR 616

Query: 167 IHSLCREGNAGRTP 180
             +  R  +  R+P
Sbjct: 617 SRTPARRRSRTRSP 630



 Score = 35.4 bits (80), Expect = 0.031
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 72  TRRPAHTGRRV--TPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPE 129
           +R PA  GR    TPAR     S T A R+ +    + +R  S     +G+ + R+PA  
Sbjct: 564 SRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARR 623

Query: 130 PAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNA-GRTPSQPPLSGY 188
            +   +        R P+  S            G++R  +  R G +  RTP++   S  
Sbjct: 624 RSRTRSPVRRRSRSRSPARRS------------GRSRSRTPARRGRSRSRTPARRGRSRS 671

Query: 189 KTPNKRN 195
           +TP +R+
Sbjct: 672 RTPARRS 678



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 51  SQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQRE 110
           S+ R P   G   +    W  +R     GR  +P R      G     +R G   S   +
Sbjct: 495 SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRR-----GRSRSPQRPGWSRSRNTQ 549

Query: 111 WSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSL 170
                R   +G+  S +P   G   S +PA   R  S       +PA      ++R  + 
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR------TPAR----RRSRSRTP 599

Query: 171 CREGNAGRTPSQPPLSGYKTPNKR 194
            R  +  RTP++   S  +TP +R
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARR 623



 Score = 31.6 bits (70), Expect = 0.45
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 70  PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSP--A 127
           P ++  +H   R    ++ SHT     GR R        R  S    ++G  + RSP   
Sbjct: 457 PTSKNRSHG--RAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWR 514

Query: 128 PEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSG 187
              +      S +P+ RG S   Q      S     + R  S  R  +  R+P+    S 
Sbjct: 515 RSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSR 574

Query: 188 YKTPNKR 194
            +TP +R
Sbjct: 575 SRTPARR 581



 Score = 31.6 bits (70), Expect = 0.45
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 72   TRRPAHTGRRVTPARACSHT-SGTGAGRKRKGGETSFQR-----EWSENRREKGQGKIRS 125
            TRR   +G   + +R    + S +   R+R+GG     R     E S     + +G+ R+
Sbjct: 1785 TRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRT 1844

Query: 126  PAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQ 182
            P        + +SPAP +R  S  S A    +    P  +R  S  R     R  S+
Sbjct: 1845 PPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901


>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
           sapiens]
          Length = 238

 Score = 35.0 bits (79), Expect = 0.041
 Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 84  PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPA--GGEASSSPAP 141
           P RA  HT   GAGR            W +       G+  +PAP  A  G    +SP P
Sbjct: 69  PERAAVHTRSLGAGR-----VVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123

Query: 142 EERG-------PSHCSQANVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYK 189
            E G       P     A+ SP   T P         RE       TPS  P+S +K
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180


>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
           sapiens]
          Length = 238

 Score = 35.0 bits (79), Expect = 0.041
 Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 84  PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPA--GGEASSSPAP 141
           P RA  HT   GAGR            W +       G+  +PAP  A  G    +SP P
Sbjct: 69  PERAAVHTRSLGAGR-----VVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123

Query: 142 EERG-------PSHCSQANVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYK 189
            E G       P     A+ SP   T P         RE       TPS  P+S +K
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180


>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
           sapiens]
          Length = 238

 Score = 35.0 bits (79), Expect = 0.041
 Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 84  PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPA--GGEASSSPAP 141
           P RA  HT   GAGR            W +       G+  +PAP  A  G    +SP P
Sbjct: 69  PERAAVHTRSLGAGR-----VVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123

Query: 142 EERG-------PSHCSQANVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYK 189
            E G       P     A+ SP   T P         RE       TPS  P+S +K
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180


>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
          Length = 265

 Score = 35.0 bits (79), Expect = 0.041
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 98  RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGE-----ASSSPAPEERGPSHCSQA 152
           R RK  E+S   +W EN + K     + P  +PAGG      + SSP+ +++G     + 
Sbjct: 11  RLRKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREE- 69

Query: 153 NVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPNKR 194
                +   P   +  +  RE  A   P+ P  SG++T  ++
Sbjct: 70  ----EAAAAPAADQQRAQDREEEAAAAPA-PTSSGHRTEKRK 106


>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 235

 Score = 34.7 bits (78), Expect = 0.053
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 51  SQPRQPRSWGPRVNAFALWPATRRP--AHTGRRVTPARACSHTSGTGAGRKRKGGETSFQ 108
           +QP Q       + A    PA RRP  +H GRR+TPA A    S  G   +R+  + +  
Sbjct: 32  AQPAQAADEVLELPALLQRPAGRRPCASHRGRRITPATALLLLSHRGRA-ERRSMQAAAA 90

Query: 109 REWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPS 147
           +  S  RR  G+G        P   E+ +  AP +R PS
Sbjct: 91  KAGSPGRRRVGKG--------PPSRESWTRSAP-QRCPS 120


>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
           [Homo sapiens]
          Length = 1130

 Score = 34.3 bits (77), Expect = 0.070
 Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 30/127 (23%)

Query: 83  TPARACSHTSGTGAGRKRKGGETSFQREWSENRREK--------GQGKIR--SPAPEP-- 130
           TPA A   T  + AG    GG +    E S  RR K         +GK+    PAP P  
Sbjct: 844 TPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPP 903

Query: 131 ------AGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPP 184
                 AGG+ S SP+ E  G +             L  KT+  SL    N+       P
Sbjct: 904 AASAGKAGGKPSQSPSQEAAGEA------------VLGAKTKATSLVDAVNSDAAKPSQP 951

Query: 185 LSGYKTP 191
             G K P
Sbjct: 952 GEGLKKP 958


>gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b
           [Homo sapiens]
          Length = 1149

 Score = 34.3 bits (77), Expect = 0.070
 Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 30/127 (23%)

Query: 83  TPARACSHTSGTGAGRKRKGGETSFQREWSENRREK--------GQGKIR--SPAPEP-- 130
           TPA A   T  + AG    GG +    E S  RR K         +GK+    PAP P  
Sbjct: 863 TPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPP 922

Query: 131 ------AGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPP 184
                 AGG+ S SP+ E  G +             L  KT+  SL    N+       P
Sbjct: 923 AASAGKAGGKPSQSPSQEAAGEA------------VLGAKTKATSLVDAVNSDAAKPSQP 970

Query: 185 LSGYKTP 191
             G K P
Sbjct: 971 GEGLKKP 977


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 33.9 bits (76), Expect = 0.091
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 124 RSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKT-RIHSLCREGNAGRTPSQ 182
           R+P+P P G EA+ SP+  +R PS  S   V   S      T R   L  E  A   PS 
Sbjct: 684 RAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSP 743

Query: 183 P 183
           P
Sbjct: 744 P 744



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 16/109 (14%)

Query: 84  PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEE 143
           P  A S +  + +  +  GG    +    E R  + +G+I         G  S SP+PE 
Sbjct: 606 PLPASSDSERSASSVEGPGGALYARVARREARPARARGEI---------GGLSLSPSPER 656

Query: 144 RGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPN 192
           R P         P   T P  + IH       AGR PS PP      P+
Sbjct: 657 RKPP-------PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS 698


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 33.9 bits (76), Expect = 0.091
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 124 RSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKT-RIHSLCREGNAGRTPSQ 182
           R+P+P P G EA+ SP+  +R PS  S   V   S      T R   L  E  A   PS 
Sbjct: 679 RAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSP 738

Query: 183 P 183
           P
Sbjct: 739 P 739



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 16/109 (14%)

Query: 84  PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEE 143
           P  A S +  + +  +  GG    +    E R  + +G+I         G  S SP+PE 
Sbjct: 601 PLPASSDSERSASSVEGPGGALYARVARREARPARARGEI---------GGLSLSPSPER 651

Query: 144 RGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPN 192
           R P         P   T P  + IH       AGR PS PP      P+
Sbjct: 652 RKPP-------PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS 693


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 93  GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
           G   GR+R G      R W   RR K + + R P P PAG      P+    G   C + 
Sbjct: 62  GNSGGRRRAGN-----RAWGSGRRGKSR-RSRGPGPWPAGSGGPRCPSAPSDGVRRCPRL 115

Query: 153 NVSPA 157
               A
Sbjct: 116 TAHAA 120



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 48  PRCSQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACS-----HTSGTGAGRKRKG 102
           PR       R WG    A  L P  +RPA   +R +  R CS       S T A R    
Sbjct: 198 PRPGPTSSRRPWG---RAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAP 254

Query: 103 GETSFQREWSENRREKGQGKIRSPAPEPAGG 133
              +        RR       R+P P  AGG
Sbjct: 255 SSVAQPSSARSQRR-------RAPCPHRAGG 278


>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
           sapiens]
          Length = 725

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 93  GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
           G   GR+R G      R W   RR K + + R P P PAG      P+    G   C + 
Sbjct: 62  GNSGGRRRAGN-----RAWGSGRRGKSR-RSRGPGPWPAGSGGPRCPSAPSDGVRRCPRL 115

Query: 153 NVSPA 157
               A
Sbjct: 116 TAHAA 120



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 48  PRCSQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACS-----HTSGTGAGRKRKG 102
           PR       R WG    A  L P  +RPA   +R +  R CS       S T A R    
Sbjct: 198 PRPGPTSSRRPWG---RAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAP 254

Query: 103 GETSFQREWSENRREKGQGKIRSPAPEPAGG 133
              +        RR       R+P P  AGG
Sbjct: 255 SSVAQPSSARSQRR-------RAPCPHRAGG 278


>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 93  GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
           GT     RKG     +   S     +   + ++  P   G EAS  PAP  R  +H  + 
Sbjct: 35  GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRL 94

Query: 153 NVSPASCTLPGKTRIHSLCRE---GNAGRTPS--QPPLSGYKTP 191
              PAS T P +TR             GR PS  +PP+S    P
Sbjct: 95  ---PASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135


>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
           sapiens]
          Length = 208

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 93  GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
           GT     RKG     +   S     +   + ++  P   G EAS  PAP  R  +H  + 
Sbjct: 35  GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRL 94

Query: 153 NVSPASCTLPGKTRIHSLCRE---GNAGRTPS--QPPLSGYKTP 191
              PAS T P +TR             GR PS  +PP+S    P
Sbjct: 95  ---PASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135


>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
           sapiens]
          Length = 208

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 93  GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
           GT     RKG     +   S     +   + ++  P   G EAS  PAP  R  +H  + 
Sbjct: 35  GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRL 94

Query: 153 NVSPASCTLPGKTRIHSLCRE---GNAGRTPS--QPPLSGYKTP 191
              PAS T P +TR             GR PS  +PP+S    P
Sbjct: 95  ---PASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 17/113 (15%)

Query: 94   TGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPE--PAGGEASS-SPAPEERG----- 145
            TG G + +      Q E +     K     RSPAPE  PA  +A S +  P E G     
Sbjct: 3716 TGGGSQPQPASGQLQSE-TATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPH 3774

Query: 146  ----PSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPNKR 194
                P    +++       +PG  R  S+   G A   P +PP    +TP K+
Sbjct: 3775 GSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPP----RTPRKQ 3823



 Score = 27.7 bits (60), Expect = 6.5
 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 20/85 (23%)

Query: 70   PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSF-------QREWSENRREKGQGK 122
            P  R P   GRR             G G KRK  E +        Q+     R+E G   
Sbjct: 1076 PPPRGPGFRGRR-------------GRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDG 1122

Query: 123  IRSPAPEPAGGEASSSPAPEERGPS 147
              +   EP G       +P+ RGPS
Sbjct: 1123 APANPEEPGGSRPGPGRSPQARGPS 1147


>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
          Length = 370

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 93  GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
           G GA  KR G     QR         G G  R P   PAGG A    AP   G +    A
Sbjct: 4   GDGAAFKRPGDGARLQRVL-------GLGSRREPRSLPAGGPAPRRTAPPPPGHASAGPA 56

Query: 153 NVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYKTPNKR 194
            +S        KT +        +G  R P   P      P++R
Sbjct: 57  AMSSHIAKSESKTSLLKAAAAAASGGSRAPRHGPARDPGLPSRR 100


>gi|56606114 trichohyalin-like 1 [Homo sapiens]
          Length = 904

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/61 (31%), Positives = 26/61 (42%)

Query: 94  TGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQAN 153
           T +  +RKG +    +E  E  RE+   KIR    E  G  A+ S  P+E     C    
Sbjct: 218 TSSPTERKGQDKEISQEGDEPAREQSVSKIRDQFGEQEGNLATQSSPPKEATQRPCEDQE 277

Query: 154 V 154
           V
Sbjct: 278 V 278



 Score = 28.9 bits (63), Expect = 2.9
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 84  PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEE 143
           P  A  H       +  +G E S +        E  +G++++  P  AG + +SSP   +
Sbjct: 169 PGEASEHNDPKN--KHLEGDEQSQEVAQDIQTTEDNEGQLKTNKPM-AGSKKTSSPTERK 225

Query: 144 RGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTP 191
                 SQ    PA      K R     +EGN   T S PP    + P
Sbjct: 226 GQDKEISQEGDEPAREQSVSKIRDQFGEQEGNLA-TQSSPPKEATQRP 272


>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
          Length = 288

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 24/144 (16%)

Query: 38  AQFWSACLLFPRCSQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAG 97
           A  W A L  PR  +PR+  S  PR  A A  P TR     GRR     + S     G G
Sbjct: 35  AAAWEAAL--PR-RRPRRHPSVNPRSRA-AGSPRTR-----GRRTEERPSGSRLGDRGRG 85

Query: 98  RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPA 157
           R   GG                 G+ R  APE  GG          R       +   PA
Sbjct: 86  RALPGGRLG--------------GRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGPA 131

Query: 158 SCTLPGK-TRIHSLCREGNAGRTP 180
                G  T + +L  +G +G  P
Sbjct: 132 GTMAAGSITTLPALPEDGGSGAFP 155


>gi|199559779 coiled-coil domain containing 8 [Homo sapiens]
          Length = 538

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 22/111 (19%)

Query: 50  CSQPRQPRSWGPRVNAFALWPATRR-------PAHTGRRVTPAR-----------ACSHT 91
           C     PR W P++N    W + RR       P   G  +   +           A +  
Sbjct: 256 CVPQASPRRWRPKIN----WASFRRRRKEQTAPTGQGADIEADQGGEAADSQREEAIADQ 311

Query: 92  SGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPE 142
               AG +R G       E ++N+RE+     R+ AP   G EA+ +   E
Sbjct: 312 REGAAGNQRAGAPADQGAEAADNQREEAADNQRAGAPAEEGAEAADNQREE 362


>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
            containing 2 [Homo sapiens]
          Length = 1455

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 70   PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGG-ETSFQREWSENRREKGQGKIRS--- 125
            P  +     GR  + ARA    +   A   R GG E       SE  R +G G   +   
Sbjct: 1332 PGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAG 1391

Query: 126  ---------PAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREG 174
                      A   AG  A   P P   G +   +A V+P    +PG  ++ S+ + G
Sbjct: 1392 PGGGGSGALEAEGRAGARAGPRPGPRPPGGAPARKAAVAPGPWKVPGSDKLPSVLKPG 1449


>gi|66529407 tensin [Homo sapiens]
          Length = 1735

 Score = 32.3 bits (72), Expect = 0.26
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 11/83 (13%)

Query: 115 RREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPG----KTRIHSL 170
           RR    G+  + +PE     A+S  +P  R P  C    ++      PG    +  +HS 
Sbjct: 895 RRAASDGQYENQSPE-----ATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSY 949

Query: 171 CR--EGNAGRTPSQPPLSGYKTP 191
               E   G +PS PP SG ++P
Sbjct: 950 KEAFEEMEGTSPSSPPPSGVRSP 972


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,681,309
Number of Sequences: 37866
Number of extensions: 636941
Number of successful extensions: 3390
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 3134
Number of HSP's gapped (non-prelim): 503
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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