Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC8 Sequence: fasta or formatted (538aa) NCBI GI: 199559779
Description:

coiled-coil domain containing 8

Referenced in:

Additional Brain Proteins
Coiled-Coil Proteins
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         77           2
 C cysteine            0.4          2           1
 D aspartate           5.8         31           2
 E glutamate          10.2         55           3
 F phenylalanine       2.2         12           1
 G glycine             7.8         42           2
 H histidine           0.9          5           1
 I isoleucine          1.5          8           1
 K lysine              4.1         22           2
 L leucine             4.5         24           2
 M methionine          0.9          5           1
 N asparagine          3.0         16           1
 P proline             7.4         40           3
 Q glutamine           7.4         40           2
 R arginine           12.5         67           4
 S serine              5.4         29           2
 T threonine           3.7         20           2
 V valine              5.8         31           2
 W tryptophan          1.5          8           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 8 
PNMA1                 0.046   paraneoplastic antigen MA1 
PNMAL1                0.042   PNMA-like 1 isoform b 
PNMAL1                0.042   PNMA-like 1 isoform a 
PNMA3                 0.040   paraneoplastic cancer-testis-brain antigen 
RP1L1                 0.032   retinitis pigmentosa 1-like 1 
PNMA2                 0.031   paraneoplastic antigen MA2 
LOC100293596          0.030   PREDICTED: similar to mucin 
FLG                   0.028   filaggrin 
PNMA5                 0.028   paraneoplastic antigen like 5 
PNMA5                 0.028   paraneoplastic antigen like 5 
PNMA5                 0.028   paraneoplastic antigen like 5 
BASP1                 0.026   brain abundant, membrane attached signal protein 1 [...
MARCKS                0.025   myristoylated alanine-rich protein kinase C substra...
CLIC6                 0.024   chloride intracellular channel 6 
MDN1                  0.023   MDN1, midasin homolog 
CCDC96                0.023   coiled-coil domain containing 96 
ARHGAP30              0.022   Rho GTPase activating protein 30 isoform 1 
LOC100288496          0.021   PREDICTED: hypothetical protein XP_002342747 
MOAP1                 0.021   modulator of apoptosis 1 
ZBTB17                0.021   zinc finger and BTB domain containing 17 
LOC100134702          0.021   PREDICTED: similar to mucin 
CHGA                  0.021   chromogranin A precursor 
NOLC1                 0.021   nucleolar and coiled-body phosphoprotein 1 
DIDO1                 0.019   death inducer-obliterator 1 isoform c 
YTHDC1                0.019   splicing factor YT521-B isoform 2 
YTHDC1                0.019   splicing factor YT521-B isoform 1 
SNRNP70               0.019   U1 small nuclear ribonucleoprotein 70 kDa 
NEFH                  0.019   neurofilament, heavy polypeptide 200kDa 
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform e...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press