Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287808 Sequence: fasta or formatted (196aa) NCBI GI: 239745782
Description:

PREDICTED: hypothetical protein XP_002343553

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         21           3
 C cysteine            3.1          6           1
 D aspartate           0.5          1           1
 E glutamate           6.1         12           2
 F phenylalanine       2.6          5           1
 G glycine             9.7         19           2
 H histidine           2.6          5           1
 I isoleucine          4.1          8           2
 K lysine              4.1          8           1
 L leucine             4.6          9           2
 M methionine          0.5          1           1
 N asparagine          3.1          6           1
 P proline            11.2         22           2
 Q glutamine           3.6          7           1
 R arginine           11.7         23           2
 S serine             11.7         23           3
 T threonine           5.6         11           1
 V valine              2.0          4           1
 W tryptophan          2.0          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343553 
LOC100292947          1.000   PREDICTED: hypothetical protein 
LOC100290242          1.000   PREDICTED: hypothetical protein XP_002347786 
SRRM1                 0.044   serine/arginine repetitive matrix 1 
FLJ37078              0.034   hypothetical protein LOC222183 
LOC100291952          0.031   PREDICTED: hypothetical protein XP_002344992 
PAWR                  0.026   PRKC, apoptosis, WT1, regulator 
LOC100293596          0.026   PREDICTED: similar to mucin 
SRRM2                 0.026   splicing coactivator subunit SRm300 
LOC100291781          0.026   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          0.026   PREDICTED: hypothetical protein XP_002347567 
LOC100286890          0.026   PREDICTED: hypothetical protein XP_002343388 
LOC100134702          0.026   PREDICTED: similar to mucin 
LOC100292262          0.026   PREDICTED: hypothetical protein 
ABL1                  0.023   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.023   c-abl oncogene 1, receptor tyrosine kinase isoform b...
SCARF2                0.023   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.023   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC100289661          0.021   PREDICTED: hypothetical protein 
LOC100289661          0.021   PREDICTED: hypothetical protein XP_002343723 
LOC100292801          0.021   PREDICTED: hypothetical protein 
LOC100290691          0.021   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.021   PREDICTED: hypothetical protein XP_002344202 
ZNF469                0.021   zinc finger protein 469 
CABP1                 0.021   calcium binding protein 1 isoform 3 
TCHHL1                0.021   trichohyalin-like 1 
FGF2                  0.021   fibroblast growth factor 2 
CCDC8                 0.021   coiled-coil domain containing 8 
MAGI2                 0.018   membrane associated guanylate kinase, WW and PDZ dom...
TNS1                  0.018   tensin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press