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Search of human proteins with 239756566
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 453 e-128
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 53 2e-07
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 46 2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 4e-05
gi|12707580 paired-like homeobox 2b [Homo sapiens] 45 6e-05
gi|153792074 proline rich 12 [Homo sapiens] 45 6e-05
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-05
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-05
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-05
gi|38788260 bromodomain PHD finger transcription factor isoform ... 44 1e-04
gi|38788274 bromodomain PHD finger transcription factor isoform ... 44 1e-04
gi|31657109 zinc finger protein 282 [Homo sapiens] 43 2e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 42 3e-04
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 42 4e-04
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 41 7e-04
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 41 7e-04
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 40 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 40 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 40 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 40 0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.003
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239741286 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 39 0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.003
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.003
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 39 0.003
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 39 0.003
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 39 0.003
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 39 0.004
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 453 bits (1165), Expect = e-128
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MPSRGPRPGAQDRKRFLKWEPAGKRGQSLRLAKGCSPLNKGQMFQTLMLPAFMNWPSEIS 60
MPSRGPRPGAQDRKRFLKWEPAGKRGQSLRLAKGCSPLNKGQMFQTLMLPAFMNWPSEIS
Sbjct: 1 MPSRGPRPGAQDRKRFLKWEPAGKRGQSLRLAKGCSPLNKGQMFQTLMLPAFMNWPSEIS 60
Query: 61 KKKMGIPPTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPC 120
KKKMGIPPTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPC
Sbjct: 61 KKKMGIPPTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPC 120
Query: 121 QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGE 180
QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGE
Sbjct: 121 QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGE 180
Query: 181 GAAGGGGAHLRHSCSTGRGSATRCPGPRRSPHTT 214
GAAGGGGAHLRHSCSTGRGSATRCPGPRRSPHTT
Sbjct: 181 GAAGGGGAHLRHSCSTGRGSATRCPGPRRSPHTT 214
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 53.1 bits (126), Expect = 2e-07
Identities = 60/233 (25%), Positives = 81/233 (34%), Gaps = 53/233 (22%)
Query: 8 PGAQDRKRFLKWEPAGKRGQSLR--LAKGCSPLNKGQMFQTLMLPAFMNWPSEISKKKMG 65
P RK+ PA R SLR +A SP+ G ++ + +K
Sbjct: 29 PEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAGTKLNSVRQQQLQQQQQQGNKTGSR 88
Query: 66 IPPTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQP-----RSLGGSLAGIAGPRPSPC 120
P +IR G GG KA P AA + QP + +LA + G RP P
Sbjct: 89 TGPPASIRGGG-----GGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPP 143
Query: 121 QAHDCE---------------RGGGGRPSHRAAAVDQGR-----PRPRVPRG-------- 152
+ E GGGG A G P+P PRG
Sbjct: 144 EEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRA 203
Query: 153 -----------QPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSC 194
P P + PG G R SG+G + G +GGGG++ + C
Sbjct: 204 QQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSG--VAGGGSGGGGSYWKEGC 254
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 46.2 bits (108), Expect = 2e-05
Identities = 37/109 (33%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 81 PGGDP---KAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRA 137
PGG+P KAQ P++AA Q S I GP+ P G G+P R
Sbjct: 40 PGGEPPGAKAQPPGPSTAALEVMQDLSANPPPPFIQGPKGDP--------GRPGKPGPRG 91
Query: 138 AAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGG 186
+ G P PR P PG + PG+ G AG G G GGG
Sbjct: 92 PPGEPGPPGPRGP-----PGEKGDSGRPGLPGLQLTAGTASGVGVVGGG 135
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.4 bits (106), Expect = 4e-05
Identities = 42/132 (31%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH 135
G + +PG A P A + R L G G+ GPR SP +G G+P
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGIT-GARGLAGP-PGMPGPRGSP--GPQGVKGESGKPGA 985
Query: 136 RAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCS 195
+ ++G P P Q LPGL +A PG G G+ GL G + GG + S
Sbjct: 986 NGLSGERGPPGP-----QGLPGLAGTAGEPGRDGN-PGSDGLPGRDGSPGGKGDRGENGS 1039
Query: 196 TGRGSATRCPGP 207
G A PGP
Sbjct: 1040 PGAPGAPGHPGP 1051
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/155 (31%), Positives = 57/155 (36%), Gaps = 24/155 (15%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQP--RSLGGS--LAGIAGPRPSPCQAHDCERGGGG 131
G PG D P + QP + GG+ L GIAGPR SP + E G G
Sbjct: 750 GADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERG--ETGPPG 807
Query: 132 RPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAG--------GLLGE--- 180
A G P + RG P G PGV G G+G G+ GE
Sbjct: 808 PAGFPGAPGQNGEPGGKGERGAP--GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGS 865
Query: 181 ----GAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
GAAG GA G+ PGP SP
Sbjct: 866 PGGPGAAGFPGARGLPGPPGSNGNPGP-PGPSGSP 899
Score = 38.1 bits (87), Expect = 0.006
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 109 LAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP-LPGLHPSAAAPGV 167
L G AG R +P G G P + A ++G P P PRG PG PG+
Sbjct: 478 LPGAAGERGAP--GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGM 535
Query: 168 GGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G GG +G G G+ +GR GPR P
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGS----QGESGRPGPPGPSGPRGQP 575
Score = 37.4 bits (85), Expect = 0.010
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 128 GGGGRPSHRAAAVDQGRPRP---RVPRGQP----LPGLHPSAAAPGVGGRASGAGGLLGE 180
G G+P + + GRP P PRGQP PG + APG G G GG +
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Query: 181 GAAGGGG 187
G G G
Sbjct: 606 GPPGKNG 612
Score = 36.6 bits (83), Expect = 0.016
Identities = 38/131 (29%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 81 PGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAV 140
P G P FP N ++ G G GP P + E G G P
Sbjct: 571 PRGQPGVMG-FPGPKGNDGAPGKN--GERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG 627
Query: 141 DQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGS 200
D+G P P+G L GL + PG G+ G GA G G G+G
Sbjct: 628 DKGDTGPPGPQG--LQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPG---------GKGD 676
Query: 201 ATRCPGPRRSP 211
A PG R P
Sbjct: 677 A-GAPGERGPP 686
Score = 34.7 bits (78), Expect = 0.062
Identities = 43/143 (30%), Positives = 51/143 (35%), Gaps = 48/143 (33%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS--LAGIAGPRPSPCQAHDCE--RGGGG 131
GI +PGG + P + G+ L G GP P P A+ RGG G
Sbjct: 387 GINGSPGGKGE-------------MGPAGIPGAPGLMGARGP-PGPAGANGAPGLRGGAG 432
Query: 132 RPSHRAAAVDQGRPRPRVPRGQP-------------------------LPGLHPSAAAPG 166
P A +G P PR RG+ LPG APG
Sbjct: 433 EPGKNGA---KGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPG 489
Query: 167 VGGRASGAGGLLGE-GAAGGGGA 188
G A G G+ GE G AG GA
Sbjct: 490 FRGPA-GPNGIPGEKGPAGERGA 511
Score = 34.3 bits (77), Expect = 0.081
Identities = 48/145 (33%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH 135
G R PG A A A QP G G AG SP E G G P
Sbjct: 306 GERGRPGLPGAAGARGNDGARGSDGQPGPPGPP--GTAGFPGSP--GAKGEVGPAGSPGS 361
Query: 136 RAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRAS--GAGGLLG----EGAAGG 185
A +G P P+ G PG++ S G G A GA GL+G G AG
Sbjct: 362 NGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGA 421
Query: 186 GGA-HLRHSC-STGRGSATRCPGPR 208
GA LR G+ A PGPR
Sbjct: 422 NGAPGLRGGAGEPGKNGAKGEPGPR 446
Score = 33.5 bits (75), Expect = 0.14
Identities = 33/101 (32%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAA----APG 166
G GPR +P G GRP AA +G R GQP P P A +PG
Sbjct: 297 GPMGPRGAP--------GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPG 348
Query: 167 VGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGP 207
G AG GA G G G A PGP
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRG----EPGPQGHAGAQGPPGP 385
Score = 32.3 bits (72), Expect = 0.31
Identities = 45/160 (28%), Positives = 54/160 (33%), Gaps = 23/160 (14%)
Query: 75 QGIRNTPG-GDPKAQACFPTSAANR--SFQPRSLGGSL-AGIAGPRPSPCQAHDCE-RGG 129
QG++ PG G P + P + + P + GG AG G R P A RGG
Sbjct: 638 QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGG 697
Query: 130 GGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRASGAGGLLGEGAAGG 185
G P G P P G P +PG +PG G GG +G G
Sbjct: 698 AGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK 757
Query: 186 GGAH-----------LRHSCSTGRGSATRCP---GPRRSP 211
G G G A P GPR SP
Sbjct: 758 DGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSP 797
Score = 31.2 bits (69), Expect = 0.69
Identities = 35/106 (33%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 106 GGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLP----GLHPS 161
GGS G AGP P P Q ERG G P +G P P G P P G
Sbjct: 846 GGS--GPAGP-PGP-QGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK 901
Query: 162 AAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGP 207
PG G +GA G G G S G PGP
Sbjct: 902 DGPPGPAGN-TGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Score = 30.8 bits (68), Expect = 0.90
Identities = 32/94 (34%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 102 PRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP-LPGLHP 160
P GG P P Q G GG P G P P+ G P PG
Sbjct: 622 PTGPGGDKGDTGPPGPQGLQGLP---GTGGPPGENGKP---GEPGPKGDAGAPGAPGGKG 675
Query: 161 SAAAPGVGGRA--SGAGGLLG----EGAAGGGGA 188
A APG G +GA GL G G GG GA
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGA 709
Score = 29.6 bits (65), Expect = 2.0
Identities = 34/110 (30%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP-------------LPG 157
G+ G SP D RG G P A G P P P G+ PG
Sbjct: 1020 GLPGRDGSPGGKGD--RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPG 1077
Query: 158 LHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGP 207
S APG G G GAAG G H G A PGP
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKG----HRGFPGNPGAPGSPGP 1123
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 126 ERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRASGAGGLLGEG 181
E G G + G P P PRG P PGL +A A G G A G+ G G
Sbjct: 277 ETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDG-ARGSDGQPGPP 335
Query: 182 AAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G + G PG +P
Sbjct: 336 GPPGTAGFPGSPGAKGEVGPAGSPGSNGAP 365
Score = 29.3 bits (64), Expect = 2.6
Identities = 40/138 (28%), Positives = 47/138 (34%), Gaps = 25/138 (18%)
Query: 74 MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRP 133
++G R +PGG A FP + R L G P P + G G
Sbjct: 859 VKGERGSPGGP--GAAGFPGA--------RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Query: 134 SHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHS 193
+ A G P+ GQP P A P GA G L G AG GA
Sbjct: 909 GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP------PGAPGPL--GIAGITGAR---- 956
Query: 194 CSTGRGSATRCPGPRRSP 211
G PGPR SP
Sbjct: 957 ---GLAGPPGMPGPRGSP 971
Score = 28.5 bits (62), Expect = 4.5
Identities = 31/111 (27%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 111 GIAGPR-PSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAP---- 165
G GP+ P + ERG G HR + G P P GQ P A P
Sbjct: 1083 GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPV 1142
Query: 166 ---GVGGR--ASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G G+ SG G +G G S G PGP +P
Sbjct: 1143 GPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 27.7 bits (60), Expect = 7.6
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGR 170
G GP P P + + ERG G P H GQP P P A P GG
Sbjct: 1158 GPIGP-PGP-RGNRGERGSEGSPGHP---------------GQPGPPGPPGAPGPCCGG- 1199
Query: 171 ASGAGGLLGEGAAGGGG 187
GA + G G GG
Sbjct: 1200 -VGAAAIAGIGGEKAGG 1215
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 44.7 bits (104), Expect = 6e-05
Identities = 34/95 (35%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 98 RSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPG 157
+S P S GG GP P+P + GGGG PS A G P P G+P G
Sbjct: 188 KSTDPDSTGGP-----GPNPNPTPSCGANGGGGGGPSPAGA---PGAAGPGGPGGEPGKG 239
Query: 158 ----LHPSAAAPGVGGRASGAGGLLGEGAAGGGGA 188
+AAA A+ AGGL G G G A
Sbjct: 240 GAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWA 274
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 44.7 bits (104), Expect = 6e-05
Identities = 42/114 (36%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 113 AGPRPSPCQAHDCERG---GGGRPS--HRA--AAVDQGRPRPRVPRGQPLPGLHPSAAAP 165
A P P P AH + GG PS HRA A G P G+P PS A
Sbjct: 298 AQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKA-GPSGATA 356
Query: 166 GVGGRASGAGGLLGEGAAGGGGAHLRHSCSTG-----------RGSATRCPGPR 208
G GRA+G G GA GGGG + S G G ATR P PR
Sbjct: 357 GASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPR 410
Score = 36.2 bits (82), Expect = 0.021
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 82 GGDPKAQACFPTSA---------ANRSFQPRSLGGSLAGIAGPRPSPC-QAHDCERGGGG 131
GG+P A P+ A + R+ P + GG AG G P Q+ + G GG
Sbjct: 336 GGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGG 395
Query: 132 RPSHRAAAVDQGRPRP----RVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGG 187
+ AAA RP P P+ Q L G AA G+ASGAGG G+ + G
Sbjct: 396 ---YGAAAGGATRPPPPRSTATPKCQSLGG----PAAAYATGKASGAGGAGGQAYSPGQP 448
Query: 188 AHLRHSCSTGRG 199
L + G+G
Sbjct: 449 QGLLGPQAYGQG 460
Score = 35.4 bits (80), Expect = 0.037
Identities = 46/155 (29%), Positives = 52/155 (33%), Gaps = 55/155 (35%)
Query: 81 PGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAG-PRPSPCQAHD--------------- 124
P G P P A +S+ P L G L G+ G P P P AH
Sbjct: 483 PSGPPP-----PGLATCQSYSPDQLQGQLYGVQGEPYPGPA-AHSQGLPTASPSLSYSTG 536
Query: 125 --------------CERGGGGR--PSHRAAAVDQGRPRPRVPRGQPLPGLH--------- 159
GGGG PSH + Q P P G PG
Sbjct: 537 HSPALSGHGGGWGPSSLGGGGEASPSHIIRPL-QSPPATGRPPGVGSPGAPGKYLSSVLA 595
Query: 160 --PSAAAPGVGGRASGAGGLLGEG-----AAGGGG 187
P A PG G A+GAGG G+G AG GG
Sbjct: 596 SAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPGG 630
Score = 28.1 bits (61), Expect = 5.8
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 81 PG-GDPKAQACFPTSA-ANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAA 138
PG G P A + +S A+ F GS A AG + G GG P+ R
Sbjct: 578 PGVGSPGAPGKYLSSVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAGPGGPPAERTE 637
Query: 139 ----AVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGG 185
+ P PR GL G G A + GL G G AGG
Sbjct: 638 DEEFLIQHLLQAPSPPRTSGADGL------VGEDGAADASKGLGGSGGAGG 682
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 8e-05
Identities = 51/149 (34%), Positives = 57/149 (38%), Gaps = 29/149 (19%)
Query: 78 RNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRA 137
R TPGG C+ NR + R G AG AGP +P G PS A
Sbjct: 161 RRTPGGGRPEAGCW---LENRRQRRRKAGAERAG-AGPTLTP----PLPAGSPDPPSPAA 212
Query: 138 AAVDQGRPRPRVPRGQ--PLPGLHPSAAAPGVGG-------RASGAG-GLLGEGAAG--- 184
A Q RP + RGQ LP P AA G ASG+G + G AA
Sbjct: 213 TAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRP 272
Query: 185 -----GGGAHLRHSCSTGRGSATRCPGPR 208
G HLR S R CPGPR
Sbjct: 273 AWAGLGPFWHLRRS---RRQDGLCCPGPR 298
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 8e-05
Identities = 51/149 (34%), Positives = 57/149 (38%), Gaps = 29/149 (19%)
Query: 78 RNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRA 137
R TPGG C+ NR + R G AG AGP +P G PS A
Sbjct: 161 RRTPGGGRPEAGCW---LENRRQRRRKAGAERAG-AGPTLTP----PLPAGSPDPPSPAA 212
Query: 138 AAVDQGRPRPRVPRGQ--PLPGLHPSAAAPGVGG-------RASGAG-GLLGEGAAG--- 184
A Q RP + RGQ LP P AA G ASG+G + G AA
Sbjct: 213 TAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRP 272
Query: 185 -----GGGAHLRHSCSTGRGSATRCPGPR 208
G HLR S R CPGPR
Sbjct: 273 AWAGLGPFWHLRRS---RRQDGLCCPGPR 298
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 8e-05
Identities = 51/149 (34%), Positives = 57/149 (38%), Gaps = 29/149 (19%)
Query: 78 RNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRA 137
R TPGG C+ NR + R G AG AGP +P G PS A
Sbjct: 161 RRTPGGGRPEAGCW---LENRRQRRRKAGAERAG-AGPTLTP----PLPAGSPDPPSPAA 212
Query: 138 AAVDQGRPRPRVPRGQ--PLPGLHPSAAAPGVGG-------RASGAG-GLLGEGAAG--- 184
A Q RP + RGQ LP P AA G ASG+G + G AA
Sbjct: 213 TAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMTGSWAAPPRP 272
Query: 185 -----GGGAHLRHSCSTGRGSATRCPGPR 208
G HLR S R CPGPR
Sbjct: 273 AWAGLGPFWHLRRS---RRQDGLCCPGPR 298
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 74 MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRP 133
M+G R P P A A + A P G + G+ + P
Sbjct: 1 MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAP 60
Query: 134 SHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHS 193
R ++ G R P P P PS +APG GGR G GG G GGGG HL +
Sbjct: 61 KTRLSSPRGGSSSRRKP--PPPPPAPPSTSAPGRGGR--GGGG--GRTGGGGGGGHLART 114
Query: 194 CSTGR 198
+ R
Sbjct: 115 TAARR 119
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 74 MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRP 133
M+G R P P A A + A P G + G+ + P
Sbjct: 1 MRGRRGRPPKQPAAPAAERCAPAPPPPPPPPTSGPIGGLRSRHRGSSRGRWAAAQAEVAP 60
Query: 134 SHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHS 193
R ++ G R P P P PS +APG GGR G GG G GGGG HL +
Sbjct: 61 KTRLSSPRGGSSSRRKP--PPPPPAPPSTSAPGRGGR--GGGG--GRTGGGGGGGHLART 114
Query: 194 CSTGR 198
+ R
Sbjct: 115 TAARR 119
>gi|31657109 zinc finger protein 282 [Homo sapiens]
Length = 671
Score = 42.7 bits (99), Expect = 2e-04
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 153 QPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRR 209
Q LPG S AP G R++G GG G+G GGGGA G GS CPG R
Sbjct: 453 QVLPGERGSGEAPPGGDRSTGGGG--GDGGGGGGGAEAGTGAGGGCGSC--CPGGLR 505
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 42.4 bits (98), Expect = 3e-04
Identities = 39/104 (37%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLP-GLHPSAAAPGVGG 169
GI G R P + G G P R A +G+P + PRG P P G H PG G
Sbjct: 2135 GIKGDRGEPGPRG--QDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPG 2192
Query: 170 RASGAG-----GLLGE-GAAGGGGAHLRHSCSTGRGSATRCPGP 207
A AG GL GE G G G L TG A PGP
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETGPPGRGL-----TGPTGAVGLPGP 2231
Score = 37.7 bits (86), Expect = 0.007
Identities = 49/173 (28%), Positives = 60/173 (34%), Gaps = 28/173 (16%)
Query: 60 SKKKMGIPPTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSL------GGSLAGIA 113
SK + G+P R G+R PG P T+ S + GS +
Sbjct: 1920 SKGEQGLPGER-----GLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVP 1974
Query: 114 GPRPSPC-----QAHDCERGGGGRPSHRAAAVDQGRPRPRVP-------RGQPLP-GLHP 160
R P Q + G G P R D+G P P+ P RG P P GL
Sbjct: 1975 ERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAG 2034
Query: 161 SAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSPHT 213
PG+ G AGG+ G AG G RG R GP P T
Sbjct: 2035 EPGKPGIPGLPGRAGGV---GEAGRPGERGERGEKGERGEQGR-DGPPGLPGT 2083
Score = 35.4 bits (80), Expect = 0.037
Identities = 39/141 (27%), Positives = 48/141 (34%), Gaps = 40/141 (28%)
Query: 76 GIRNTPG--GDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSP-------------- 119
G++ PG G P PT A P +G+ GP+ SP
Sbjct: 2204 GLKGEPGETGPPGRGLTGPTGAVGLPGPPGP-----SGLVGPQGSPGLPGQVGETGKPGA 2258
Query: 120 -----CQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAA---PGVGGRA 171
D +RG G P G P P P+G+P P P A PG G
Sbjct: 2259 PGRDGASGKDGDRGSPGVPG------SPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
Query: 172 SGAGGLLGE-----GAAGGGG 187
GGL G+ GA G G
Sbjct: 2313 GAPGGLAGDLVGEPGAKGDRG 2333
Score = 33.5 bits (75), Expect = 0.14
Identities = 41/143 (28%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 67 PPTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDC- 125
PP A+ G R PG P A P R+ G AG G R + +
Sbjct: 2016 PPGLAL---GERGPPG--PSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERG 2070
Query: 126 ERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGG 185
E+G G P G P P+V +P PGL PG+ G G +G G
Sbjct: 2071 EQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGD 2130
Query: 186 GGAHLRHSCSTGRGSATRCPGPR 208
G RG PGPR
Sbjct: 2131 RGV---PGIKGDRGE----PGPR 2146
Score = 32.7 bits (73), Expect = 0.24
Identities = 42/150 (28%), Positives = 51/150 (34%), Gaps = 20/150 (13%)
Query: 81 PGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPR-----PSPCQAHDCERGGGGRPSH 135
P G P A P L G L G G + P P + E G G P
Sbjct: 2294 PTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGP-RGEKGEAGRAGEPGD 2352
Query: 136 RAAAVDQGRPRPRVPRGQP---LPGLHPSAAAPGVGGRAS-----GAGGLLG-EGAAGGG 186
+G P P+ +G P +PG PGV G GA G++G G G
Sbjct: 2353 PGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPR 2412
Query: 187 GAHLRHSCSTGRGSA-----TRCPGPRRSP 211
G + S RG A PGP P
Sbjct: 2413 GEMGQPGPSGERGLAGPPGREGIPGPLGPP 2442
Score = 29.6 bits (65), Expect = 2.0
Identities = 46/157 (29%), Positives = 54/157 (34%), Gaps = 45/157 (28%)
Query: 68 PTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPR-SLGGSLAGIAGPRPSPCQAHDCE 126
P + +G R PG D + + P A N L GS G+ GPR P E
Sbjct: 1288 PPGSATAKGERGFPGADGRPGS--PGRAGNPGTPGAPGLKGS-PGLPGPRGDPG-----E 1339
Query: 127 RG------------------GGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSA-- 162
RG G G P + G P PR P G P PGL +A
Sbjct: 1340 RGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMK 1399
Query: 163 -----------AAPGVGGRASGAGGLLG-EGAAGGGG 187
PG GG A G GL G G+ G G
Sbjct: 1400 GDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQG 1436
Score = 29.6 bits (65), Expect = 2.0
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 106 GGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAP 165
G S + P P + ERG G + D G P + +G+ PG SA P
Sbjct: 2520 GDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGE--PGDKGSAGLP 2577
Query: 166 GVGGRAS-----GAGGLLGEGAAGG 185
G+ G GA G+ G+ + G
Sbjct: 2578 GLRGLLGPQGQPGAAGIPGDPGSPG 2602
Score = 28.9 bits (63), Expect = 3.4
Identities = 37/132 (28%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 81 PGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGP-RPSPCQAHDCERGGGGRPSHRAAA 139
P GDP P A R + G+ GP Q E G G P
Sbjct: 1644 PPGDPG----LPGKAGERGLR------GAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPK 1693
Query: 140 VDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRG 199
D+G P P P G+ L P A G G G +G G GA RG
Sbjct: 1694 GDRGEPGPPGPPGR-LVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRG 1752
Query: 200 SATRCPGPRRSP 211
PGP+ P
Sbjct: 1753 P----PGPQGDP 1760
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 42.0 bits (97), Expect = 4e-04
Identities = 44/152 (28%), Positives = 57/152 (37%), Gaps = 33/152 (21%)
Query: 81 PGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAV 140
P G P A + T+ N + S G P+ SP +H+ G P+ A AV
Sbjct: 324 PSGPPPAASALSTTPGNNGVPAPAAPPSALG---PKASPAPSHN-----SGTPAPYAQAV 375
Query: 141 DQGRPRPRVPRG-QPLPGLHPSAAAPGVGGRASGAGG--LLGEGAAGGGG---------- 187
P P P QP P PS G GG SG GG +AGGG
Sbjct: 376 --APPAPSGPSTTQPRP---PSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYS 430
Query: 188 -------AHLRHSCSTGRGSATRCPGPRRSPH 212
A + S S G ++++ GP PH
Sbjct: 431 SVVADSPAEVALSSSGGNNASSQALGPPSGPH 462
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 41.2 bits (95), Expect = 7e-04
Identities = 35/84 (41%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 127 RGGG--GRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAG 184
RGGG GR R +GR R R RG+P G G+GG G GG G +G
Sbjct: 69 RGGGVCGRGRGRGRGRGRGRGRGR-GRGRPPSG------GSGLGGDGGGCGG----GGSG 117
Query: 185 GGGAHLRHSCSTGRGSATRCPGPR 208
GGGA R GSA PGPR
Sbjct: 118 GGGAPRREPVPFPSGSAG--PGPR 139
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 41.2 bits (95), Expect = 7e-04
Identities = 35/84 (41%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 127 RGGG--GRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAG 184
RGGG GR R +GR R R RG+P G G+GG G GG G +G
Sbjct: 69 RGGGVCGRGRGRGRGRGRGRGRGR-GRGRPPSG------GSGLGGDGGGCGG----GGSG 117
Query: 185 GGGAHLRHSCSTGRGSATRCPGPR 208
GGGA R GSA PGPR
Sbjct: 118 GGGAPRREPVPFPSGSAG--PGPR 139
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 113 AGPRPSPCQAHDCERGGGGRPSHRAAAV----DQGRPRPRVPRGQPLPGLHPSAAAPGVG 168
A P SP + GGGG S R++ + DQ PR R P PG P P VG
Sbjct: 83 AQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGRSDPRPGPGP----PSVG 138
Query: 169 GRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
S L G+AG L CP P RSP
Sbjct: 139 SARSSVSSLGSRGSAGAYADFLPPGA---------CPAPARSP 172
Score = 30.4 bits (67), Expect = 1.2
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 96 ANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPR-PRVPRGQP 154
A R +P G G GPRP P G G+ S A G R R PR
Sbjct: 19 ALRELEP-GCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRRAA 77
Query: 155 LPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
+P L +A P RAS AG + GGGG S G R PR
Sbjct: 78 VPEL---SAQPAGSPRASLAG------SDGGGGGGSARSSGISLGYDQRHGSPR 122
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 102 PRSLGGSLA--GIAGPRPSP-CQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP---- 154
PR L G G+ GPR +P G G P + QG P P +G P
Sbjct: 653 PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG 712
Query: 155 LPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
LPG PG G G GL G A G H +G A PGP+
Sbjct: 713 LPGPQGPIGPPGEKG-PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 765
Score = 36.2 bits (82), Expect = 0.021
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 109 LAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVG 168
L G AGP SP D ++G G P + + D+G P P PGL APG+
Sbjct: 1124 LPGPAGPAGSP--GEDGDKGEIGEPGQKGSKGDKGENGPPGP-----PGLQGPVGAPGIA 1176
Query: 169 G-----RASGAGGLLG----EGAAGGGG 187
G G G+ G EGA G G
Sbjct: 1177 GGDGEPGPRGQQGMFGQKGDEGARGFPG 1204
Score = 30.8 bits (68), Expect = 0.90
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 75 QGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS----LAGIAGPRPSPCQAHDCERGGG 130
QG+ G D P P S G L G+ GP Q +RG
Sbjct: 1431 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE--QGEKGDRGLP 1488
Query: 131 GRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGG 185
G A D G P P P G P P P P ++G G G+ G
Sbjct: 1489 GTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG 1543
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 92 PTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPR 151
PT +A + L + + GP P P G G P A + G P P+ PR
Sbjct: 519 PTISAQEAQAQAILQQARIALRGP-PGPMGLTG-RPGPVGGPGSSGAKGESGDPGPQGPR 576
Query: 152 G-QPLPGLHPSAAAPGVGGR--ASGAGGLLGEGAAGG 185
G Q PG PG GR A G G+ GE A G
Sbjct: 577 GVQGPPG---PTGKPGKRGRPGADGGRGMPGEPGAKG 610
Score = 29.3 bits (64), Expect = 2.6
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLP-GLHPSAAAPGVG 168
AG+ GP+ E+G G P +G P P+G P P G PG
Sbjct: 1281 AGVGGPK-----GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1335
Query: 169 GRA--SGAGGLLGEGAAGG 185
G A G GG GE G
Sbjct: 1336 GPAGQDGVGGDKGEDGDPG 1354
Score = 28.1 bits (61), Expect = 5.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 102 PRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPG 157
PR G+ P P D G G + G P P+ P G P LPG
Sbjct: 899 PRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958
Query: 158 LHPSAAAPGVGGRAS--GAGGLLG-EGAAGGGG 187
G G+ G GG++G +G G G
Sbjct: 959 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG 991
Score = 27.3 bits (59), Expect = 10.0
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGR 170
G GP P A G G + D G+P P P G+ P P P
Sbjct: 1327 GDPGPPGEPGPA-----GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGP---PG 1378
Query: 171 ASGAGGLLGE-GAAGGGGA 188
A+GA G GE GA G GA
Sbjct: 1379 AAGAEGRQGEKGAKGEAGA 1397
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 102 PRSLGGSLA--GIAGPRPSP-CQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP---- 154
PR L G G+ GPR +P G G P + QG P P +G P
Sbjct: 602 PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG 661
Query: 155 LPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
LPG PG G G GL G A G H +G A PGP+
Sbjct: 662 LPGPQGPIGPPGEKG-PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 714
Score = 36.2 bits (82), Expect = 0.021
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 109 LAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVG 168
L G AGP SP D ++G G P + + D+G P P PGL APG+
Sbjct: 1073 LPGPAGPAGSP--GEDGDKGEIGEPGQKGSKGDKGENGPPGP-----PGLQGPVGAPGIA 1125
Query: 169 G-----RASGAGGLLG----EGAAGGGG 187
G G G+ G EGA G G
Sbjct: 1126 GGDGEPGPRGQQGMFGQKGDEGARGFPG 1153
Score = 30.8 bits (68), Expect = 0.90
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 75 QGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS----LAGIAGPRPSPCQAHDCERGGG 130
QG+ G D P P S G L G+ GP Q +RG
Sbjct: 1380 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE--QGEKGDRGLP 1437
Query: 131 GRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGG 185
G A D G P P P G P P P P ++G G G+ G
Sbjct: 1438 GTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG 1492
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 92 PTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPR 151
PT +A + L + + GP P P G G P A + G P P+ PR
Sbjct: 468 PTISAQEAQAQAILQQARIALRGP-PGPMGLTG-RPGPVGGPGSSGAKGESGDPGPQGPR 525
Query: 152 G-QPLPGLHPSAAAPGVGGR--ASGAGGLLGEGAAGG 185
G Q PG PG GR A G G+ GE A G
Sbjct: 526 GVQGPPG---PTGKPGKRGRPGADGGRGMPGEPGAKG 559
Score = 29.3 bits (64), Expect = 2.6
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLP-GLHPSAAAPGVG 168
AG+ GP+ E+G G P +G P P+G P P G PG
Sbjct: 1230 AGVGGPK-----GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1284
Query: 169 GRA--SGAGGLLGEGAAGG 185
G A G GG GE G
Sbjct: 1285 GPAGQDGVGGDKGEDGDPG 1303
Score = 28.1 bits (61), Expect = 5.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 102 PRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPG 157
PR G+ P P D G G + G P P+ P G P LPG
Sbjct: 848 PRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907
Query: 158 LHPSAAAPGVGGRAS--GAGGLLG-EGAAGGGG 187
G G+ G GG++G +G G G
Sbjct: 908 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG 940
Score = 27.3 bits (59), Expect = 10.0
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGR 170
G GP P A G G + D G+P P P G+ P P P
Sbjct: 1276 GDPGPPGEPGPA-----GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGP---PG 1327
Query: 171 ASGAGGLLGE-GAAGGGGA 188
A+GA G GE GA G GA
Sbjct: 1328 AAGAEGRQGEKGAKGEAGA 1346
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 102 PRSLGGSLA--GIAGPRPSP-CQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP---- 154
PR L G G+ GPR +P G G P + QG P P +G P
Sbjct: 641 PRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG 700
Query: 155 LPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
LPG PG G G GL G A G H +G A PGP+
Sbjct: 701 LPGPQGPIGPPGEKG-PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ 753
Score = 36.2 bits (82), Expect = 0.021
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 109 LAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVG 168
L G AGP SP D ++G G P + + D+G P P PGL APG+
Sbjct: 1112 LPGPAGPAGSP--GEDGDKGEIGEPGQKGSKGDKGENGPPGP-----PGLQGPVGAPGIA 1164
Query: 169 G-----RASGAGGLLG----EGAAGGGG 187
G G G+ G EGA G G
Sbjct: 1165 GGDGEPGPRGQQGMFGQKGDEGARGFPG 1192
Score = 30.8 bits (68), Expect = 0.90
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 75 QGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS----LAGIAGPRPSPCQAHDCERGGG 130
QG+ G D P P S G L G+ GP Q +RG
Sbjct: 1419 QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE--QGEKGDRGLP 1476
Query: 131 GRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGG 185
G A D G P P P G P P P P ++G G G+ G
Sbjct: 1477 GTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG 1531
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 92 PTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPR 151
PT +A + L + + GP P P G G P A + G P P+ PR
Sbjct: 507 PTISAQEAQAQAILQQARIALRGP-PGPMGLTG-RPGPVGGPGSSGAKGESGDPGPQGPR 564
Query: 152 G-QPLPGLHPSAAAPGVGGR--ASGAGGLLGEGAAGG 185
G Q PG PG GR A G G+ GE A G
Sbjct: 565 GVQGPPG---PTGKPGKRGRPGADGGRGMPGEPGAKG 598
Score = 29.3 bits (64), Expect = 2.6
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLP-GLHPSAAAPGVG 168
AG+ GP+ E+G G P +G P P+G P P G PG
Sbjct: 1269 AGVGGPK-----GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1323
Query: 169 GRA--SGAGGLLGEGAAGG 185
G A G GG GE G
Sbjct: 1324 GPAGQDGVGGDKGEDGDPG 1342
Score = 28.1 bits (61), Expect = 5.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 102 PRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPG 157
PR G+ P P D G G + G P P+ P G P LPG
Sbjct: 887 PRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946
Query: 158 LHPSAAAPGVGGRAS--GAGGLLG-EGAAGGGG 187
G G+ G GG++G +G G G
Sbjct: 947 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG 979
Score = 27.3 bits (59), Expect = 10.0
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGR 170
G GP P A G G + D G+P P P G+ P P P
Sbjct: 1315 GDPGPPGEPGPA-----GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGP---PG 1366
Query: 171 ASGAGGLLGE-GAAGGGGA 188
A+GA G GE GA G GA
Sbjct: 1367 AAGAEGRQGEKGAKGEAGA 1385
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.003
Identities = 46/166 (27%), Positives = 59/166 (35%), Gaps = 26/166 (15%)
Query: 65 GIPPTRAIR-MQGIRNTPGGD----------PKAQACFP-TSAANRSFQPRSLGGSLAGI 112
G+P T + M+G R G D PK + P + A PR L G
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 313
Query: 113 AGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRP---------RPRVPRGQPLP-GLHPSA 162
P P+ + +D G G P A G P P+ PRG P G+
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 163 AAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
PG G A AG +G G GA + + G A PG R
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGA----NGAPGIAGAPGFPGAR 415
Score = 37.7 bits (86), Expect = 0.007
Identities = 29/88 (32%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLP----------GLH 159
AG AGP + D + G G P A D G P P P G P P G
Sbjct: 811 AGFAGPPGA-----DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 160 PSAAAPGVGGRASGAGGLLGEGAAGGGG 187
SA PG G AG + G +G G
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAG 893
Score = 35.4 bits (80), Expect = 0.037
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 64 MGIPPTRAIRMQGIRNTPG--GDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPR-PSPC 120
+G+P R R G PG G+P Q P+ A+ P +G G+AGP S
Sbjct: 961 VGLPGQRGER--GFPGLPGPSGEPGKQG--PSGASGERGPPGPMGPP--GLAGPPGESGR 1014
Query: 121 QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP-LPGLHPSAAAPGVGGRASGAGGLLG 179
+ G GR A D+G P P G P PG APG G A +G
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG------APGPVGPAGKSGDRGE 1068
Query: 180 EGAAGGGG 187
G AG G
Sbjct: 1069 TGPAGPAG 1076
Score = 35.0 bits (79), Expect = 0.048
Identities = 46/174 (26%), Positives = 57/174 (32%), Gaps = 14/174 (8%)
Query: 18 KWEPAGKRGQSLRLAKGCSPLNKGQMFQTLMLPAFMNWPSEISKK-KMGIP-PTRAIRMQ 75
K P G GQ R P +GQ + P E K + G+P P A+
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQA-GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 610
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH 135
G G P A R Q + G+ GP P G G+P
Sbjct: 611 GKDGEAGAQGPPGPAGP--AGERGEQGPAGSPGFQGLPGPAGPP--------GEAGKPGE 660
Query: 136 RAAAVDQGRPRPRVPRGQ-PLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGA 188
+ D G P P RG+ PG PG G G +GA G GA
Sbjct: 661 QGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA 714
Score = 35.0 bits (79), Expect = 0.048
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 111 GIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPG 166
G+ GP P P RG G P + A D G P +G P +PG +A PG
Sbjct: 686 GVQGP-PGPAGP----RGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 740
Query: 167 VGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G AG +G+ G G G PGP +P
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVR-------GLTGPIGPPGPAGAP 778
Score = 34.3 bits (77), Expect = 0.081
Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 33/150 (22%)
Query: 65 GIP-PTRAIRMQGIRNTPG--GDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQ 121
G+P P A QG + PG G+P A G + P P
Sbjct: 188 GLPGPPGAPGPQGFQGPPGEPGEPGAS------------------GPMGPRGPPGPPGKN 229
Query: 122 AHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEG 181
D E G GRP R G P P+ RG LPG +A PG+ G G GL G
Sbjct: 230 GDDGEAGKPGRPGER------GPPGPQGARG--LPG---TAGLPGMKGH-RGFSGLDGAK 277
Query: 182 AAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G S G A GPR P
Sbjct: 278 GDAGPAGPKGEPGSPGENGAPGQMGPRGLP 307
Score = 33.5 bits (75), Expect = 0.14
Identities = 35/113 (30%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPR-PSPCQAHDCERGGGGRPS 134
G R G A PT A P ++G G AGP+ P + RG G P
Sbjct: 320 GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAK--GEAGPQGPRGSEGPQGVRGEPGPPG 377
Query: 135 HRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGG 187
AA G P GQP G + APG+ G G G G GG
Sbjct: 378 PAGAAGPAGNPGAD---GQP--GAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425
Score = 33.5 bits (75), Expect = 0.14
Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 17/116 (14%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH 135
G R PG D A P A P G AGP+ SP +A G G P
Sbjct: 491 GSRGFPGADGVAG---PKGPAGERGSP--------GPAGPKGSPGEAG--RPGEAGLPGA 537
Query: 136 RAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLG----EGAAGGGG 187
+ G P P G P P P A G G++G +GAAG G
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 593
Score = 30.8 bits (68), Expect = 0.90
Identities = 36/121 (29%), Positives = 42/121 (34%), Gaps = 22/121 (18%)
Query: 103 RSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH-RAAAVDQGRPRPRVPRGQPLP----- 156
R L G + G GP +P + G P+ R A D+G P P P G P
Sbjct: 763 RGLTGPI-GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 821
Query: 157 -----------GLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCP 205
G A PG G A G + GA G GA S G AT P
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR----GSAGPPGATGFP 877
Query: 206 G 206
G
Sbjct: 878 G 878
Score = 29.6 bits (65), Expect = 2.0
Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 115 PRPSPCQAHDCERGGGGRPSHRAA---------AVDQGRPRPRVPRGQPLPGLHPSAAAP 165
P P+ ERGG G A A ++G P P P+G P A P
Sbjct: 475 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSP-----GEAGRP 529
Query: 166 GVGGRASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGP 207
G G GA GL G + G G+ PGP
Sbjct: 530 GEAG-LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP 570
Score = 29.6 bits (65), Expect = 2.0
Identities = 40/140 (28%), Positives = 49/140 (35%), Gaps = 23/140 (16%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS--LAGIAGPRPSPCQAHDCERGGGGRP 133
G + +PG D A A P + P+ + G + G+ G R ERG G P
Sbjct: 932 GEKGSPGADGPAGA--PGTPG-----PQGIAGQRGVVGLPGQRG--------ERGFPGLP 976
Query: 134 SHRAAAVDQGRPRPRVPRGQPLPGLHPS-AAAPGVGGR-----ASGAGGLLGEGAAGGGG 187
QG RG P P P A PG GR A G+ G G A G
Sbjct: 977 GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Query: 188 AHLRHSCSTGRGSATRCPGP 207
+ G A PGP
Sbjct: 1037 GETGPAGPPGAPGAPGAPGP 1056
Score = 28.5 bits (62), Expect = 4.5
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 111 GIAGPR-PSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAP-GVG 168
G AGP+ P + E+G G HR + QG P P G+ P A P G
Sbjct: 1085 GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP 1144
Query: 169 GRASGAG--GLLG-EGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G A G GL G G G G R TG PGP P
Sbjct: 1145 GSAGAPGKDGLNGLPGPIGPPGPRGR----TGDAGPVGPPGPPGPP 1186
>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 39.3 bits (90), Expect = 0.003
Identities = 56/220 (25%), Positives = 84/220 (38%), Gaps = 44/220 (20%)
Query: 2 PSRG----PRPGAQDRKR---FLKWEPAGKRGQ---------------SLRLAKGCSPLN 39
PSRG P+PG++ RK+ L E G++ SL ++G
Sbjct: 28 PSRGGRKQPQPGSRQRKQNPISLPGEQNGRKATPQAGALGALGIRGIPSLCQSEGTRWSR 87
Query: 40 KGQMFQTLMLPAFMNWPSEISKKKMGI----PPTRAIRMQGIRNTPGGDPKA---QACFP 92
+G+ + P + + ++ + PP +R G N P A +AC
Sbjct: 88 RGRRWAERCPPGVLGAGRSLRAQRSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQEACLQ 147
Query: 93 TSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCER-GGGGRPSHRAAAVDQ-GRPR---- 146
S R ++ +L L +G S +A C R GGGGR A A + PR
Sbjct: 148 ASGTTRGWKYHALPLRLDPRSGHAGSALKAGSCPRLGGGGRGRGEAGAPSRFWLPRSLQQ 207
Query: 147 --PRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAG 184
P PR + LHP+ + G R G+GA G
Sbjct: 208 LLPNEPRNADVQTLHPTPSHTRRGQRT-------GKGARG 240
>gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 39.3 bits (90), Expect = 0.003
Identities = 56/220 (25%), Positives = 84/220 (38%), Gaps = 44/220 (20%)
Query: 2 PSRG----PRPGAQDRKR---FLKWEPAGKRGQ---------------SLRLAKGCSPLN 39
PSRG P+PG++ RK+ L E G++ SL ++G
Sbjct: 28 PSRGGRKQPQPGSRQRKQNPISLPGEQNGRKATPQAGALGALGIRGIPSLCQSEGTRWSR 87
Query: 40 KGQMFQTLMLPAFMNWPSEISKKKMGI----PPTRAIRMQGIRNTPGGDPKA---QACFP 92
+G+ + P + + ++ + PP +R G N P A +AC
Sbjct: 88 RGRRWAERCPPGVLGAGRSLRAQRSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTHEACLQ 147
Query: 93 TSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCER-GGGGRPSHRAAAVDQ-GRPR---- 146
S R ++ +L L +G S +A C R GGGGR A A + PR
Sbjct: 148 ASGTTRGWKYHALPLRLDPRSGHAGSALKAGSCPRLGGGGRGRGEAGAPSRFWLPRSLQQ 207
Query: 147 --PRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAG 184
P PR + LHP+ + G R G+GA G
Sbjct: 208 LLPNEPRNADVQTLHPTPSHTRRGQRT-------GKGARG 240
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/76 (38%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 126 ERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEG-AAG 184
E G GGR P R R +PLP PSAAA G R+S G EG A G
Sbjct: 34 EEGAGGRQD----------PSRRSIRLRPLPSPSPSAAAGGTESRSSALGAADSEGPARG 83
Query: 185 GGGAHLRHSCSTGRGS 200
G + C RGS
Sbjct: 84 AGKSSTNGDCRRFRGS 99
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.9 bits (89), Expect = 0.003
Identities = 50/155 (32%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 67 PPTRAIR--MQGIRNTPG--GDPKAQACFPTSAANRSFQPRSLGGS--LAGIAGPRPSPC 120
PP RA +QG PG G+P S A P+ L G + G+ G R
Sbjct: 937 PPGRAGEPGLQGPAGPPGEKGEPGDDG---PSGAEGPPGPQGLAGQRGIVGLPGQRG--- 990
Query: 121 QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRASGAGG 176
ERG G P QG P RG P PGL A PG G G
Sbjct: 991 -----ERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Query: 177 LLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
+GAAG G TG A PGP SP
Sbjct: 1046 PGRDGAAGVKGDR----GETGAVGAPGAPGPPGSP 1076
Score = 38.5 bits (88), Expect = 0.004
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 23/143 (16%)
Query: 61 KKKMGIPPTRAIR-------MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS----L 109
K + G P R ++ +QG+ PG A P + P +G S
Sbjct: 1118 KGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGA 1177
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGG 169
GI GP P G GR A G P P P G P PG+ SA A G+G
Sbjct: 1178 NGIPGPIGPP--------GPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFA-GLGP 1228
Query: 170 RASGAGGL---LGEGAAGGGGAH 189
R G L + AAGG H
Sbjct: 1229 REKGPDPLQYMRADQAAGGLRQH 1251
Score = 35.8 bits (81), Expect = 0.028
Identities = 39/125 (31%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 65 GIPPTRAIR-MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAH 123
G P T + ++G R PG D S P G G GPR P
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP--GPMGPRGLPG--- 330
Query: 124 DCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPS-AAAPGVGGRASGAGGLLGEGA 182
ERG G A + G+P P P G P P APG G A G EGA
Sbjct: 331 --ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGA 388
Query: 183 AGGGG 187
G G
Sbjct: 389 QGPRG 393
Score = 35.4 bits (80), Expect = 0.037
Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGG----SLAGIAGPRPSPCQAHDCERGGGG 131
G+R PG D + A P A + + G G+ GP P G GG
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP--------GEGG 678
Query: 132 RPSHRAAAVDQGRPRPRVPRGQ-PLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGG 187
+P + + G P PRG+ PG S A G+ G G +G G G
Sbjct: 679 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 735
Score = 34.3 bits (77), Expect = 0.081
Identities = 36/110 (32%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 92 PTSAANRSFQPRSLG-----GSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPR 146
PT A S QP G G + I GP+ P G G R ++G P
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPP--GPQGPAGEQGPRGDRGDKGEKGAPG 147
Query: 147 PRVPRGQP-LPGLHPSAAAPGVGGRASGAGGLLGEGAAGG-----GGAHL 190
PR G+P PG PG G G GG AGG GGA L
Sbjct: 148 PRGRDGEPGTPGNPGPPGPPGPPG-PPGLGGNFAAQMAGGFDEKAGGAQL 196
Score = 34.3 bits (77), Expect = 0.081
Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 106 GGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAP 165
G L G GP P P A+ E+G G P +A +G P R G P P A P
Sbjct: 784 GRGLTGPIGP-PGPAGANG-EKGEVGPPGPAGSAGARGAPGERGETGPPGPA--GFAGPP 839
Query: 166 GVGGRASGAGGLLGE-GAAGGGGAHLRHSCSTGRGSATRCPGPR 208
G G+ GA G GE G G GA G + PGP+
Sbjct: 840 GADGQ-PGAKGEQGEAGQKGDAGA-------PGPQGPSGAPGPQ 875
Score = 32.7 bits (73), Expect = 0.24
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH 135
G R PG + A QP G AGP P P GG G P
Sbjct: 324 GPRGLPGERGRTGPAGAAGARGNDGQP--------GPAGP-PGPVGP----AGGPGFPGA 370
Query: 136 RAAAVDQGRPRPRVPRGQPLPGLHP-SAAAPGVGGRASGAGGLLG-EGAAGGGGAHLRHS 193
A + G R P G P P + +PG G ASG G G GA G GA
Sbjct: 371 PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGA----- 424
Query: 194 CSTGRGSATRCPGPRRSP 211
G A PGPR P
Sbjct: 425 --PGIAGAPGFPGPRGPP 440
Score = 31.6 bits (70), Expect = 0.53
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGG 169
AG AGP + D + G G D G P P+ P G P P P
Sbjct: 833 AGFAGPPGA-----DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR 887
Query: 170 RASGAGGLLG-EGAAGGGGAHLRHSCSTGRGSATRCPGP 207
A G G G GAAG G S G PGP
Sbjct: 888 GAQGPPGATGFPGAAGRVGP----PGSNGNPGPPGPPGP 922
Score = 30.0 bits (66), Expect = 1.5
Identities = 32/102 (31%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 111 GIAGPRPSPCQ-AHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGG 169
G+ G SP + G G P R G R GQP P P P G
Sbjct: 306 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 365
Query: 170 RASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
GA G GE AG GA RG PG SP
Sbjct: 366 GFPGAPGAKGE--AGPTGARGPEGAQGPRGE----PGTPGSP 401
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 127 RGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRASGAGGLLGEGA 182
RG G R G P P G P +PG SA APG+ G A G G G
Sbjct: 383 RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPG 441
Query: 183 AGGGGAHLRHSCSTG 197
G L TG
Sbjct: 442 PQGATGPLGPKGQTG 456
Score = 28.1 bits (61), Expect = 5.8
Identities = 44/148 (29%), Positives = 50/148 (33%), Gaps = 9/148 (6%)
Query: 68 PTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPR-PSPCQAHDCE 126
PT +G R G P FP AA R P S G G GP PS
Sbjct: 877 PTGVTGPKGARGAQG--PPGATGFP-GAAGRVGPPGSNGNP--GPPGPPGPSGKDGPKGA 931
Query: 127 RGGGGRPSHRAAAVDQGRPRPRVPRGQP-LPGLHPSAAAPGVGGRASGAG--GLLGEGAA 183
RG G P QG P +G+P G + PG G A G GL G+
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 184 GGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G S G+ A G R P
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGPP 1019
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.9 bits (89), Expect = 0.003
Identities = 50/155 (32%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 67 PPTRAIR--MQGIRNTPG--GDPKAQACFPTSAANRSFQPRSLGGS--LAGIAGPRPSPC 120
PP RA +QG PG G+P S A P+ L G + G+ G R
Sbjct: 868 PPGRAGEPGLQGPAGPPGEKGEPGDDG---PSGAEGPPGPQGLAGQRGIVGLPGQRG--- 921
Query: 121 QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRASGAGG 176
ERG G P QG P RG P PGL A PG G G
Sbjct: 922 -----ERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Query: 177 LLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
+GAAG G TG A PGP SP
Sbjct: 977 PGRDGAAGVKGDR----GETGAVGAPGAPGPPGSP 1007
Score = 38.5 bits (88), Expect = 0.004
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 23/143 (16%)
Query: 61 KKKMGIPPTRAIR-------MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGS----L 109
K + G P R ++ +QG+ PG A P + P +G S
Sbjct: 1049 KGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGA 1108
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGG 169
GI GP P G GR A G P P P G P PG+ SA A G+G
Sbjct: 1109 NGIPGPIGPP--------GPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFA-GLGP 1159
Query: 170 RASGAGGL---LGEGAAGGGGAH 189
R G L + AAGG H
Sbjct: 1160 REKGPDPLQYMRADQAAGGLRQH 1182
Score = 35.8 bits (81), Expect = 0.028
Identities = 39/125 (31%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 65 GIPPTRAIR-MQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAH 123
G P T + ++G R PG D S P G G GPR P
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP--GPMGPRGLPG--- 261
Query: 124 DCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPS-AAAPGVGGRASGAGGLLGEGA 182
ERG G A + G+P P P G P P APG G A G EGA
Sbjct: 262 --ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGA 319
Query: 183 AGGGG 187
G G
Sbjct: 320 QGPRG 324
Score = 35.4 bits (80), Expect = 0.037
Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGG----SLAGIAGPRPSPCQAHDCERGGGG 131
G+R PG D + A P A + + G G+ GP P G GG
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP--------GEGG 609
Query: 132 RPSHRAAAVDQGRPRPRVPRGQ-PLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGG 187
+P + + G P PRG+ PG S A G+ G G +G G G
Sbjct: 610 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 666
Score = 34.3 bits (77), Expect = 0.081
Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 106 GGSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAP 165
G L G GP P P A+ E+G G P +A +G P R G P P A P
Sbjct: 715 GRGLTGPIGP-PGPAGANG-EKGEVGPPGPAGSAGARGAPGERGETGPPGPA--GFAGPP 770
Query: 166 GVGGRASGAGGLLGE-GAAGGGGAHLRHSCSTGRGSATRCPGPR 208
G G+ GA G GE G G GA G + PGP+
Sbjct: 771 GADGQ-PGAKGEQGEAGQKGDAGA-------PGPQGPSGAPGPQ 806
Score = 32.7 bits (73), Expect = 0.24
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 76 GIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAHDCERGGGGRPSH 135
G R PG + A QP G AGP P P GG G P
Sbjct: 255 GPRGLPGERGRTGPAGAAGARGNDGQP--------GPAGP-PGPVGP----AGGPGFPGA 301
Query: 136 RAAAVDQGRPRPRVPRGQPLPGLHP-SAAAPGVGGRASGAGGLLG-EGAAGGGGAHLRHS 193
A + G R P G P P + +PG G ASG G G GA G GA
Sbjct: 302 PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGA----- 355
Query: 194 CSTGRGSATRCPGPRRSP 211
G A PGPR P
Sbjct: 356 --PGIAGAPGFPGPRGPP 371
Score = 31.6 bits (70), Expect = 0.53
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 110 AGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGG 169
AG AGP + D + G G D G P P+ P G P P P
Sbjct: 764 AGFAGPPGA-----DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR 818
Query: 170 RASGAGGLLG-EGAAGGGGAHLRHSCSTGRGSATRCPGP 207
A G G G GAAG G S G PGP
Sbjct: 819 GAQGPPGATGFPGAAGRVGP----PGSNGNPGPPGPPGP 853
Score = 30.0 bits (66), Expect = 1.5
Identities = 32/102 (31%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 111 GIAGPRPSPCQ-AHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGG 169
G+ G SP + G G P R G R GQP P P P G
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP 296
Query: 170 RASGAGGLLGEGAAGGGGAHLRHSCSTGRGSATRCPGPRRSP 211
GA G GE AG GA RG PG SP
Sbjct: 297 GFPGAPGAKGE--AGPTGARGPEGAQGPRGE----PGTPGSP 332
Score = 29.6 bits (65), Expect = 2.0
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 107 GSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQP-LPGLHPSAAAP 165
G + I GP+ P G G R ++G P PR G+P PG P
Sbjct: 41 GDIKDIVGPKGPP--GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPP 98
Query: 166 GVGGRASGAGGLLGEGAAGG-----GGAHL 190
G G G GG AGG GGA L
Sbjct: 99 GPPG-PPGLGGNFAAQMAGGFDEKAGGAQL 127
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 127 RGGGGRPSHRAAAVDQGRPRPRVPRGQP----LPGLHPSAAAPGVGGRASGAGGLLGEGA 182
RG G R G P P G P +PG SA APG+ G A G G G
Sbjct: 314 RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPG 372
Query: 183 AGGGGAHLRHSCSTG 197
G L TG
Sbjct: 373 PQGATGPLGPKGQTG 387
Score = 28.1 bits (61), Expect = 5.8
Identities = 44/148 (29%), Positives = 50/148 (33%), Gaps = 9/148 (6%)
Query: 68 PTRAIRMQGIRNTPGGDPKAQACFPTSAANRSFQPRSLGGSLAGIAGPR-PSPCQAHDCE 126
PT +G R G P FP AA R P S G G GP PS
Sbjct: 808 PTGVTGPKGARGAQG--PPGATGFP-GAAGRVGPPGSNGNP--GPPGPPGPSGKDGPKGA 862
Query: 127 RGGGGRPSHRAAAVDQGRPRPRVPRGQP-LPGLHPSAAAPGVGGRASGAG--GLLGEGAA 183
RG G P QG P +G+P G + PG G A G GL G+
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 184 GGGGAHLRHSCSTGRGSATRCPGPRRSP 211
G S G+ A G R P
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGPP 950
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 110 AGIAGPRPSPC-QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGL-------HPS 161
+G G R PC H ++ G H A+A G P P G +P
Sbjct: 183 SGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPG 242
Query: 162 AAAPGVGGRASGAGGLLGEGAAGGGG 187
+ PG GG G GG G G +GGGG
Sbjct: 243 YSRPGAGGGGGGGGG--GGGGSGGGG 266
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 110 AGIAGPRPSPC-QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGL-------HPS 161
+G G R PC H ++ G H A+A G P P G +P
Sbjct: 183 SGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPG 242
Query: 162 AAAPGVGGRASGAGGLLGEGAAGGGG 187
+ PG GG G GG G G +GGGG
Sbjct: 243 YSRPGAGGGGGGGGG--GGGGSGGGG 266
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 110 AGIAGPRPSPC-QAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGL-------HPS 161
+G G R PC H ++ G H A+A G P P G +P
Sbjct: 183 SGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPG 242
Query: 162 AAAPGVGGRASGAGGLLGEGAAGGGG 187
+ PG GG G GG G G +GGGG
Sbjct: 243 YSRPGAGGGGGGGGG--GGGGSGGGG 266
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/102 (31%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 107 GSLAGIAGPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPG 166
GS G PS AH GG + + Q P P P Q P HP A G
Sbjct: 8 GSKGGHGAASPSEKGAHPS--GGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHG 65
Query: 167 VGGRASGAGG-------LLGEGAAGGGGAHLRHSCSTGRGSA 201
GG G GG AA A SCS G A
Sbjct: 66 KGGHRGGGGGGGKSSSSSSASAAAAAAAASSSASCSRRLGRA 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,758,092
Number of Sequences: 37866
Number of extensions: 772065
Number of successful extensions: 8181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 702
Number of HSP's that attempted gapping in prelim test: 5044
Number of HSP's gapped (non-prelim): 2797
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.