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Search of human proteins with 239756297
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756297 PREDICTED: hypothetical protein [Homo sapiens]
(525 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756297 PREDICTED: hypothetical protein [Homo sapiens] 1084 0.0
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 695 0.0
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 536 e-152
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 49 1e-05
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 49 1e-05
gi|110431352 transducer of regulated CREB protein 3 isoform b [H... 49 1e-05
gi|110431354 transducer of regulated CREB protein 3 isoform a [H... 49 1e-05
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 48 2e-05
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 48 3e-05
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 48 3e-05
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 47 6e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 1e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 45 1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 45 2e-04
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 44 3e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 44 3e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 44 3e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 3e-04
gi|150170699 kinesin family member 26A [Homo sapiens] 44 3e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 44 4e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 44 4e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 44 4e-04
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-04
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-04
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-04
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-04
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-04
>gi|239756297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 525
Score = 1084 bits (2803), Expect = 0.0
Identities = 525/525 (100%), Positives = 525/525 (100%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYG 240
GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYG
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYG 240
Query: 241 PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPT 300
PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPT
Sbjct: 241 PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPT 300
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 360
PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ
Sbjct: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ 360
Query: 361 IGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 420
IGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG
Sbjct: 361 IGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALG 420
Query: 421 ETAPTAQFTFRKRRPLHYLLPQPLQPWYTILYSWDQALPPWYLLAGFNLTVLFDTECGQY 480
ETAPTAQFTFRKRRPLHYLLPQPLQPWYTILYSWDQALPPWYLLAGFNLTVLFDTECGQY
Sbjct: 421 ETAPTAQFTFRKRRPLHYLLPQPLQPWYTILYSWDQALPPWYLLAGFNLTVLFDTECGQY 480
Query: 481 HIRVCQTKRKQVVEPRLPEPAIRLQGTPKPRTLGLECHILQVTKA 525
HIRVCQTKRKQVVEPRLPEPAIRLQGTPKPRTLGLECHILQVTKA
Sbjct: 481 HIRVCQTKRKQVVEPRLPEPAIRLQGTPKPRTLGLECHILQVTKA 525
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 695 bits (1794), Expect = 0.0
Identities = 362/437 (82%), Positives = 371/437 (84%), Gaps = 34/437 (7%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGG DVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRE-SSEAYPLP--QLGAIGSGQAV 237
GQETECQDDCFLGKSDLQNFEELREPAGTGP L E + +A LP L A+ +
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPLLGHLLELAKDALKLPDDHLHALSN---- 236
Query: 238 AYGPFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPR 297
P LT ++ + T L R + R PP L R
Sbjct: 237 ---PLPLTTTA--------GVVTGLPEVRGAPNVH---------RLPPPPSL-------R 269
Query: 298 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL 357
TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL
Sbjct: 270 TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHL 329
Query: 358 GVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRS 417
GVQIGRVR PLGSALPYPARSELAPPGA+DALSPDPERPCPGTRGVRSGREGLLSPAPRS
Sbjct: 330 GVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPGTRGVRSGREGLLSPAPRS 389
Query: 418 ALGETAPTAQFTFRKRR 434
ALGETAPTAQFTFRK R
Sbjct: 390 ALGETAPTAQFTFRKVR 406
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 536 bits (1381), Expect = e-152
Identities = 285/355 (80%), Positives = 290/355 (81%), Gaps = 36/355 (10%)
Query: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA
Sbjct: 1 MGLCMGRLRGQAHFFLLHLLLTVPLLIVTAQSMVEHFVTEPHPLPCPWGPLGQLALHRGA 60
Query: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGAELPAV 120
STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGG DVQEGAELPAV
Sbjct: 61 STKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGRDVQEGAELPAV 120
Query: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN
Sbjct: 121 LLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLNPSSTQGLTKPLADGTAQWN 180
Query: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYG 240
GQETECQDDCFLGKSDLQNFEELREPAGTGP
Sbjct: 181 GQETECQDDCFLGKSDLQNFEELREPAGTGP----------------------------- 211
Query: 241 PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPT 300
PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPR+
Sbjct: 212 PFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRSGA 271
Query: 301 PG--LTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRA-SLSG-PFGPGPQGGPPS 351
P + GLP G + + P LGRA +G P PGP G PS
Sbjct: 272 PRMFIVYHVAAGLPILPPAGHTLRLPPRSPP-RLGRAPHFNGPPAHPGP--GRPS 323
Score = 282 bits (721), Expect = 6e-76
Identities = 140/155 (90%), Positives = 142/155 (91%), Gaps = 7/155 (4%)
Query: 280 RIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 339
R R+ PP L RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG
Sbjct: 387 RERAWPPPSL-------RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSG 439
Query: 340 PFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPG 399
PFGPGPQGGPPSRDRRHLGVQIGRVR PLGSALPYPARSELAPPGA+DALSPDPERPCPG
Sbjct: 440 PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAPPGARDALSPDPERPCPG 499
Query: 400 TRGVRSGREGLLSPAPRSALGETAPTAQFTFRKRR 434
TRGVRSGREGLLSPAPRSALGETAPTAQFTFRK R
Sbjct: 500 TRGVRSGREGLLSPAPRSALGETAPTAQFTFRKVR 534
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 48.9 bits (115), Expect = 1e-05
Identities = 74/279 (26%), Positives = 97/279 (34%), Gaps = 33/279 (11%)
Query: 200 FEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYGPFVLTQSS------RPTDM 253
F L P T P P + S + P G + A GP T S RP
Sbjct: 696 FSYLAGPPATPPDPPRPKRRSHSLSRPG-PTEGDAEGEAEGPVGSTLGSYATLTRRPGRS 754
Query: 254 LLNSLATSLS---SRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEG---- 306
L + S++ +R P S + R + PP SS+ P P L E
Sbjct: 755 ALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPK 814
Query: 307 -GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 365
G TG + P+ +E GP G AS + PGP+G PPSR G+
Sbjct: 815 EGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEG 874
Query: 366 APLGSALPYPA----RSELAPPGAQDALS-PDPERPCPGTR------------GVRSGRE 408
P PA R PPG L+ D + P R GV S
Sbjct: 875 NLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATP 934
Query: 409 GLLSPAPRSALGETAPTAQFTFRKRRPLHYL-LPQPLQP 446
G +P P GE+ P + + L +P PL P
Sbjct: 935 GPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAP 973
Score = 32.3 bits (72), Expect = 1.1
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 366 APLGSALPYPARSELAPPGAQDALSPDPER-----PCPGTRGVRSGREGLLSPAPRSALG 420
+P S+LP P S L G L+P P PCPG GL S A G
Sbjct: 948 SPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCPG--------PGLESSAASRWNG 999
Query: 421 ETAPTA 426
ET P A
Sbjct: 1000 ETEPPA 1005
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 48.9 bits (115), Expect = 1e-05
Identities = 74/279 (26%), Positives = 97/279 (34%), Gaps = 33/279 (11%)
Query: 200 FEELREPAGTGPTLPGGRESSEAYPLPQLGAIGSGQAVAYGPFVLTQSS------RPTDM 253
F L P T P P + S + P G + A GP T S RP
Sbjct: 778 FSYLAGPPATPPDPPRPKRRSHSLSRPG-PTEGDAEGEAEGPVGSTLGSYATLTRRPGRS 836
Query: 254 LLNSLATSLS---SRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEG---- 306
L + S++ +R P S + R + PP SS+ P P L E
Sbjct: 837 ALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPK 896
Query: 307 -GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 365
G TG + P+ +E GP G AS + PGP+G PPSR G+
Sbjct: 897 EGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEG 956
Query: 366 APLGSALPYPA----RSELAPPGAQDALS-PDPERPCPGTR------------GVRSGRE 408
P PA R PPG L+ D + P R GV S
Sbjct: 957 NLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATP 1016
Query: 409 GLLSPAPRSALGETAPTAQFTFRKRRPLHYL-LPQPLQP 446
G +P P GE+ P + + L +P PL P
Sbjct: 1017 GPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAP 1055
Score = 32.3 bits (72), Expect = 1.1
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 366 APLGSALPYPARSELAPPGAQDALSPDPER-----PCPGTRGVRSGREGLLSPAPRSALG 420
+P S+LP P S L G L+P P PCPG GL S A G
Sbjct: 1030 SPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCPG--------PGLESSAASRWNG 1081
Query: 421 ETAPTA 426
ET P A
Sbjct: 1082 ETEPPA 1087
>gi|110431352 transducer of regulated CREB protein 3 isoform b [Homo
sapiens]
Length = 618
Score = 48.9 bits (115), Expect = 1e-05
Identities = 65/249 (26%), Positives = 93/249 (37%), Gaps = 31/249 (12%)
Query: 209 TGPTLPGGRESSEAYPLP--------QLGAIGSGQAVAYGPFVLT----------QSSRP 250
TG +LP + PLP G++ G +V P +T QSSR
Sbjct: 270 TGGSLPDLTNLHYSTPLPASLDTTDHHFGSMSVGNSVNNIPAAMTHLGIRSSSGLQSSRS 329
Query: 251 TDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTG 310
+ +L ++ S + ++ P T + P L SL P T L+
Sbjct: 330 NPSIQATLNKTVLSSSL-NNHPQTSVPNAS--ALHPSLRLFSLSNPSLSTTNLSG----- 381
Query: 311 LPSKQRRGP-SPKTELGGPQGSLG---RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRA 366
PS++R+ P SP T GP+ G + S + P P P S DR L +A
Sbjct: 382 -PSRRRQPPVSPLTLSPGPEAHQGFSRQLSSTSPLAPYPTSQMVSSDRSQLSFLPTEAQA 440
Query: 367 PLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTA 426
+ PYPA EL P Q +P+ P + L PA S+L P
Sbjct: 441 QVSPPPPYPAPQELTQPLLQQPRAPEAPAQQPQAASSLPQSDFQLLPAQGSSLTNFFPDV 500
Query: 427 QFTFRKRRP 435
F + RP
Sbjct: 501 GFDQQSMRP 509
>gi|110431354 transducer of regulated CREB protein 3 isoform a [Homo
sapiens]
Length = 619
Score = 48.9 bits (115), Expect = 1e-05
Identities = 65/249 (26%), Positives = 93/249 (37%), Gaps = 31/249 (12%)
Query: 209 TGPTLPGGRESSEAYPLP--------QLGAIGSGQAVAYGPFVLT----------QSSRP 250
TG +LP + PLP G++ G +V P +T QSSR
Sbjct: 270 TGGSLPDLTNLHYSTPLPASLDTTDHHFGSMSVGNSVNNIPAAMTHLGIRSSSGLQSSRS 329
Query: 251 TDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTG 310
+ +L ++ S + ++ P T + P L SL P T L+
Sbjct: 330 NPSIQATLNKTVLSSSL-NNHPQTSVPNAS--ALHPSLRLFSLSNPSLSTTNLSG----- 381
Query: 311 LPSKQRRGP-SPKTELGGPQGSLG---RASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRA 366
PS++R+ P SP T GP+ G + S + P P P S DR L +A
Sbjct: 382 -PSRRRQPPVSPLTLSPGPEAHQGFSRQLSSTSPLAPYPTSQMVSSDRSQLSFLPTEAQA 440
Query: 367 PLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTA 426
+ PYPA EL P Q +P+ P + L PA S+L P
Sbjct: 441 QVSPPPPYPAPQELTQPLLQQPRAPEAPAQQPQAASSLPQSDFQLLPAQGSSLTNFFPDV 500
Query: 427 QFTFRKRRP 435
F + RP
Sbjct: 501 GFDQQSMRP 509
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 48.1 bits (113), Expect = 2e-05
Identities = 71/248 (28%), Positives = 89/248 (35%), Gaps = 51/248 (20%)
Query: 213 LPGGRESS-------EAYPLPQLGAIGSGQAVAYGPFVLTQSSRPTDMLLNSLATSLSSR 265
LPGGR + PL LG G V P +L+SL LS R
Sbjct: 3 LPGGRMACPGPLRLRRTSPLVLLGCPEKGSWVGPSP------------VLSSLMAGLSLR 50
Query: 266 RMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEG--GGTGLPSKQRRGPSPKT 323
+ R R+R+ G G P P G G G P + P P+
Sbjct: 51 SPE------VVGRVASRARARTWEGGKEGHAAVPQPATRSGRLGVWGGPLRHSWAPRPR- 103
Query: 324 ELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPP 383
Q S R GP PGP G P R R +G + GR+ + GS LP P RS LA
Sbjct: 104 -----QASQTRGGGGGPSLPGPAGRPSGRSRSRVGAR-GRLPSG-GSHLPQPPRS-LAAA 155
Query: 384 GAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQFTFRKRRPLHYLLPQP 443
A A++ + GL P P A AP + +RP L
Sbjct: 156 SAWQAVARE---------------LGLSGPRPTEAPPFPAPRVRAPPPPQRPAQLRLLAG 200
Query: 444 LQPWYTIL 451
L+P T L
Sbjct: 201 LRPVVTSL 208
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 47.8 bits (112), Expect = 3e-05
Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 30/177 (16%)
Query: 266 RMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTEL 325
R P P + + + P + SLG P P P G GLP K GP
Sbjct: 61 RSPLLSPDMKNLMLELETSQSPCMQGSLGSPGPPGPQ----GPPGLPGKT--GPK----- 109
Query: 326 GGPQGSLGR------------ASLSGPFG-PGPQGGPPSRDRRHLGVQ-IGRVRAPLGSA 371
G +G LGR + GP G PGP+G P ++ LG+ + R P+GS
Sbjct: 110 -GEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEG--PRGEKGDLGMMGLPGSRGPMGSK 166
Query: 372 LPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSAL-GETAPTAQ 427
+R E G + L P E+ PG G+ G++G + P + G PT +
Sbjct: 167 GYPGSRGEKGSRGEKGDLGPKGEKGFPGFPGM-LGQKGEMGPKGEPGIAGHRGPTGR 222
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 25/87 (28%)
Query: 317 RGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYP 375
RGP+ + G QG G + + GP G PGP G P GR P
Sbjct: 217 RGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQP------------GRPGPP-------- 256
Query: 376 ARSELAPPGAQDALSPDPERPCPGTRG 402
PP Q + P ER PG G
Sbjct: 257 ----GPPPAGQLIMGPKGERGFPGPPG 279
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 47.8 bits (112), Expect = 3e-05
Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 30/177 (16%)
Query: 266 RMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTEL 325
R P P + + + P + SLG P P P G GLP K GP
Sbjct: 71 RSPLLSPDMKNLMLELETSQSPCMQGSLGSPGPPGPQ----GPPGLPGKT--GPK----- 119
Query: 326 GGPQGSLGR------------ASLSGPFG-PGPQGGPPSRDRRHLGVQ-IGRVRAPLGSA 371
G +G LGR + GP G PGP+G P ++ LG+ + R P+GS
Sbjct: 120 -GEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEG--PRGEKGDLGMMGLPGSRGPMGSK 176
Query: 372 LPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSAL-GETAPTAQ 427
+R E G + L P E+ PG G+ G++G + P + G PT +
Sbjct: 177 GYPGSRGEKGSRGEKGDLGPKGEKGFPGFPGM-LGQKGEMGPKGEPGIAGHRGPTGR 232
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 25/87 (28%)
Query: 317 RGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYP 375
RGP+ + G QG G + + GP G PGP G P GR P
Sbjct: 227 RGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQP------------GRPGPP-------- 266
Query: 376 ARSELAPPGAQDALSPDPERPCPGTRG 402
PP Q + P ER PG G
Sbjct: 267 ----GPPPAGQLIMGPKGERGFPGPPG 289
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 46.6 bits (109), Expect = 6e-05
Identities = 42/132 (31%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTEL--GGPQGSLGRASLSGPFGPGPQG---GPP 350
PR +G G P ++ RGP P L GPQ G + G GP PQG GPP
Sbjct: 790 PRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPP 849
Query: 351 SRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSP-DPERPCPGTRGVRSGREG 409
R G Q + P GS P P PPG Q +P P G + +
Sbjct: 850 QELRGPPGSQ-SQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTP 908
Query: 410 LLSPAPRSALGE 421
LL PR+ +
Sbjct: 909 LLGDGPRAPFNQ 920
Score = 38.9 bits (89), Expect = 0.012
Identities = 45/147 (30%), Positives = 57/147 (38%), Gaps = 47/147 (31%)
Query: 312 PSKQRRGPSPKTELG-----------GPQGSLGRASLSGPFGPGPQGGPPSRD------- 353
P Q R P P+ ++G GPQG +G GP GP PQG P +D
Sbjct: 622 PQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGP---QGPQGP-PQGLPRPQDMHGPQGM 677
Query: 354 RRH------LGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD----------PERPC 397
+RH LG Q P GS+ P PPG Q + P P+ P
Sbjct: 678 QRHPGPHGPLGPQ--GPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGP- 734
Query: 398 PGTRGVRSGREGLLSPAPRSALGETAP 424
PGT+G++ P PR G P
Sbjct: 735 PGTQGMQG------PPGPRGMQGPPHP 755
Score = 38.1 bits (87), Expect = 0.020
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 27/120 (22%)
Query: 305 EGGGTGLPSKQRRGPSPKTELGGPQGSLG---RASLSGPFGPGPQGGPPSRDRRHLGVQI 361
+G G P + R P +++ G PQGSLG + + GP PGPQG Q
Sbjct: 842 QGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGP--PGPQG------------QQ 887
Query: 362 GRVRAPLGSALPYPARSELAP--------PGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
R P S P P + + P P Q+ S P PG + G +G + P
Sbjct: 888 NPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLG--QQGAQGRIPP 945
Score = 37.7 bits (86), Expect = 0.026
Identities = 40/143 (27%), Positives = 52/143 (36%), Gaps = 24/143 (16%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTELG-----------GPQGSLGRASLSGPFGP- 343
P+ P GL P +R P P LG GPQG +G GP G
Sbjct: 658 PQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHI 717
Query: 344 GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV 403
GPQG P + HLG P G + P G Q P + PG++G+
Sbjct: 718 GPQG--PPGPQGHLG--------PQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGI 767
Query: 404 RS--GREGLLSPAPRSALGETAP 424
+ + L+ PR G P
Sbjct: 768 QGPVSQGPLMGLNPRGMQGPPGP 790
Score = 36.2 bits (82), Expect = 0.075
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 319 PSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPL--GSALPYPA 376
P P+ LG PQG G + GP GP GPP G ++ P+ G +
Sbjct: 723 PGPQGHLG-PQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNP 781
Query: 377 RSELAPPGAQDALSPDPE 394
R PPG ++ P P+
Sbjct: 782 RGMQGPPGPRENQGPAPQ 799
Score = 33.5 bits (75), Expect = 0.49
Identities = 37/139 (26%), Positives = 49/139 (35%), Gaps = 5/139 (3%)
Query: 294 GCPRTPTPGLTEGG--GTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPS 351
G P P +GG G+ +GP G QG G GP G G P
Sbjct: 748 GMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGMIMGHPP 807
Query: 352 RDRRHLGVQIGRV-RAPLGSALPYPARSELAPPGAQDALSPDPE-RPCPGTRGVRSGREG 409
++ R G + P P R PP L P E R PG++ + +G
Sbjct: 808 QEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQG 867
Query: 410 LLSPAPRSAL-GETAPTAQ 427
L P P+ + G P Q
Sbjct: 868 SLGPPPQGGMQGPPGPQGQ 886
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.4 bits (106), Expect = 1e-04
Identities = 52/142 (36%), Positives = 59/142 (41%), Gaps = 25/142 (17%)
Query: 294 GCPRTPTPGLTEG--GGTGLPSKQ-RRG----PSPKTELG--GPQGSLGRASLSGPFGPG 344
G P TP P G G GLP ++ RG P P E G GP G+ G GP GP
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPP 1003
Query: 345 PQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQ-DALSPDPERPCPGTRGV 403
GPP + GR AP A P R PGA+ D P P PG G
Sbjct: 1004 GLAGPPG--------ESGREGAP--GAEGSPGRD--GSPGAKGDRGETGPAGP-PGAPGA 1050
Query: 404 RSGREGLLSPAPRSA-LGETAP 424
G G + PA +S GET P
Sbjct: 1051 -PGAPGPVGPAGKSGDRGETGP 1071
Score = 40.8 bits (94), Expect = 0.003
Identities = 47/150 (31%), Positives = 53/150 (35%), Gaps = 27/150 (18%)
Query: 286 PPLLGS------SLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELG-----GPQGSLGR 334
PP LG S G T G++ G G PS R P P G GP G G
Sbjct: 152 PPGLGGNFAPQLSYGYDEKSTGGISVPGPMG-PSGPRGLPGPPGAPGPQGFQGPPGEPGE 210
Query: 335 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPE 394
SGP GP GPP ++ G A E PPG Q A
Sbjct: 211 PGASGPMGPRGPPGPPGKN------------GDDGEAGKPGRPGERGPPGPQGARGLPGT 258
Query: 395 RPCPGTRGVR--SGREGLLSPA-PRSALGE 421
PG +G R SG +G A P GE
Sbjct: 259 AGLPGMKGHRGFSGLDGAKGDAGPAGPKGE 288
Score = 40.4 bits (93), Expect = 0.004
Identities = 42/141 (29%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 294 GCPRTP----TPGLT----EGGGTGLPS-KQRRGPSPKTELGGPQGSLGRASLSGPFG-P 343
G P P PGL E G GLP K RG + G G G L+GP G P
Sbjct: 713 GAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPP 772
Query: 344 GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV 403
GP G P + G P G+ R E PPG P PG +G
Sbjct: 773 GPAGAPGDKGESGPSGPAG----PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG- 827
Query: 404 RSGREGLLSPAPRSALGETAP 424
P A G+ P
Sbjct: 828 --------EPGDAGAKGDAGP 840
Score = 39.7 bits (91), Expect = 0.007
Identities = 40/126 (31%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR-DRRHLGV 359
PG+ G G P RGPS GGP G G + G PG +G ++ + +GV
Sbjct: 403 PGIA--GAPGFPGA--RGPSGPQGPGGPPGPKGNSGEPG--APGSKGDTGAKGEPGPVGV 456
Query: 360 QIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP-APRSA 418
Q P G A R PG P ER PG+RG G +G+ P P
Sbjct: 457 Q-----GPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF-PGADGVAGPKGPAGE 510
Query: 419 LGETAP 424
G P
Sbjct: 511 RGSPGP 516
Score = 39.7 bits (91), Expect = 0.007
Identities = 44/138 (31%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 305 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-------PGPQGGP-------P 350
E G G P GP+ + GP GS G L GP G PG QG P P
Sbjct: 615 EAGAQGPPGPA--GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 672
Query: 351 SRDRRHLGVQIGR-VRAPLGSALPYPARSELAPPGAQ-DALSPDP--ERPCPGTRGVRSG 406
S R G R V+ P G A P A GA+ DA +P + PG +G+
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732
Query: 407 REGLLSPAPRSALGETAP 424
R P P+ G+ P
Sbjct: 733 RGAAGLPGPKGDRGDAGP 750
Score = 38.1 bits (87), Expect = 0.020
Identities = 42/126 (33%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 305 EGGGTGLPSK--QRRGPSPKTELG-----GPQGSLGRASLSGPFGPGPQGGPPSRDRRHL 357
E G TGLP +R GP + G GP+G G GP GP G P R
Sbjct: 474 EPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGP---KGSPGEAGRPG 530
Query: 358 GVQIGRVRAPLGSALPYPARSELAPPG--AQDALSPDPERPCPGTRGVRSGREGLLSPAP 415
+ + GS + PPG QD P P P PG RG ++G G P P
Sbjct: 531 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG-RPGPPGP-PGARG-QAGVMGF--PGP 585
Query: 416 RSALGE 421
+ A GE
Sbjct: 586 KGAAGE 591
Score = 36.6 bits (83), Expect = 0.058
Identities = 40/131 (30%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 307 GGTGLPS-KQRRGPSPKTELGGPQGSLGRASLSG-PFGPGPQGGPPSRDRRHLGVQIGRV 364
G GLP K RG S L G +G G A G P PG G P R L + GR
Sbjct: 257 GTAGLPGMKGHRGFSG---LDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 313
Query: 365 RAP-----------LGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
AP G+A P PPG A+ E G RG + P
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 414 APRSALGETAP 424
P G P
Sbjct: 374 GPPGPAGAAGP 384
Score = 36.6 bits (83), Expect = 0.058
Identities = 42/136 (30%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-------GPQGGPPSRDRRHLGV 359
G G P GP G +G G A +GP GP GPQG P D+ G
Sbjct: 1046 GAPGAPGAP--GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG--PRGDKGETGE 1101
Query: 360 QIGR-VRAPLG-SALPYPARSELAP--PGAQDALSPDPERPCPGTRGVRSGREGLLS--- 412
Q R ++ G S L P +P G A P R PG+ G G++GL
Sbjct: 1102 QGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA-PGKDGLNGLPG 1160
Query: 413 ----PAPRSALGETAP 424
P PR G+ P
Sbjct: 1161 PIGPPGPRGRTGDAGP 1176
Score = 36.2 bits (82), Expect = 0.075
Identities = 46/144 (31%), Positives = 53/144 (36%), Gaps = 33/144 (22%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----------PGPQGG---PPSRD 353
G TG P GP KT GP G GR GP G PGP+G P
Sbjct: 539 GLTGSPGSP--GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG 596
Query: 354 RRHLGVQIGRV-----------RAPLGSALPYPARSELAPPGAQDALS-PDPERPCPGTR 401
R + G V + P G A P R E P G+ P P P PG
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP-PGEA 655
Query: 402 GVRSGREG----LLSPAPRSALGE 421
G + G +G L +P P A GE
Sbjct: 656 G-KPGEQGVPGDLGAPGPSGARGE 678
Score = 33.5 bits (75), Expect = 0.49
Identities = 35/133 (26%), Positives = 42/133 (31%), Gaps = 7/133 (5%)
Query: 301 PGLT-EGGGTGLP----SKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR 355
PG T G G P +K GP GPQG G GP G G P D +
Sbjct: 334 PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQ 393
Query: 356 HLGVQIGRVRAPLGSALPYP-ARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
G + + A +P AR P G P PG G + P
Sbjct: 394 P-GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 415 PRSALGETAPTAQ 427
P G P +
Sbjct: 453 PVGVQGPPGPAGE 465
Score = 32.7 bits (73), Expect = 0.83
Identities = 35/102 (34%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 307 GGTGLPS-KQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 365
G G P K GPS G +G+ G GP GP GPP D Q G
Sbjct: 773 GPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG-----QPGAKG 827
Query: 366 APLGSALPYPARSELAPPG-AQDALSPDP--ERPCPGTRGVR 404
P G A A+ + PPG A A P P PG +G R
Sbjct: 828 EP-GDA---GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Score = 32.7 bits (73), Expect = 0.83
Identities = 47/168 (27%), Positives = 54/168 (32%), Gaps = 48/168 (28%)
Query: 297 RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP------------- 343
R PG G G P GP+ K GP+G G A G GP
Sbjct: 882 RVGPPG--PSGNAGPPGPP--GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP 937
Query: 344 ---GPQGGPPSRDRRHLGVQIGRVRAPLG------SALPYPARSELAPPGAQDALSPDPE 394
GP G P + + + Q G V P LP P+ PG Q E
Sbjct: 938 GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS----GEPGKQGPSGASGE 993
Query: 395 RPCPGTRGV--------RSGREGLL----------SPAPRSALGETAP 424
R PG G SGREG SP + GET P
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGP 1041
Score = 31.2 bits (69), Expect = 2.4
Identities = 41/148 (27%), Positives = 50/148 (33%), Gaps = 27/148 (18%)
Query: 286 PPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG- 344
P L G P P P G + GP+ G G++G +GP GP
Sbjct: 303 PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRG 362
Query: 345 ---PQG-----GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERP 396
PQG GPP P G+A P PGA+ A
Sbjct: 363 SEGPQGVRGEPGPP---------------GPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 397 CPGTRGVR--SGREGLLS-PAPRSALGE 421
PG G R SG +G P P+ GE
Sbjct: 408 APGFPGARGPSGPQGPGGPPGPKGNSGE 435
Score = 31.2 bits (69), Expect = 2.4
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 3/107 (2%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR 355
PR E G G+ K RG S GP GS G SG GP GPP
Sbjct: 1092 PRGDKGETGEQGDRGI--KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA 1149
Query: 356 HLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
+ + P+G P + P G P P P P + G
Sbjct: 1150 PGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-PGPPGPPSAG 1195
Score = 30.0 bits (66), Expect = 5.4
Identities = 33/121 (27%), Positives = 38/121 (31%), Gaps = 25/121 (20%)
Query: 305 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 364
E G G +K GP GP G +G G G GPP
Sbjct: 828 EPGDAG--AKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP-------------- 871
Query: 365 RAPLGSALPYP-ARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETA 423
A +P A + PPG P P P P + G G PA R GE
Sbjct: 872 -----GATGFPGAAGRVGPPGPSGNAGP-PGPPGPAGKEGGKGPRGETGPAGRP--GEVG 923
Query: 424 P 424
P
Sbjct: 924 P 924
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.4 bits (106), Expect = 1e-04
Identities = 48/172 (27%), Positives = 63/172 (36%), Gaps = 16/172 (9%)
Query: 285 SPPLLGSSLGCPRTPTPGLTE---GGGTGLPSKQR--RGPSPKTELGGPQGSLGRASLSG 339
S P +S P T G GG G P R PSP+ + G PQ + + S+SG
Sbjct: 513 SAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATR-QTSVSG 571
Query: 340 PFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAP---PGAQDALSPDPERP 396
P P G PP +R G + P G A P S+ P G P P P
Sbjct: 572 PAPPKASGAPPGGQQRQ-----GPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGP 626
Query: 397 CPGTR--GVRSGREGLLSPAPRSALGETAPTAQFTFRKRRPLHYLLPQPLQP 446
P R + + P P +A P Q + + LP+P P
Sbjct: 627 GPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPP 678
Score = 37.4 bits (85), Expect = 0.034
Identities = 38/145 (26%), Positives = 47/145 (32%), Gaps = 16/145 (11%)
Query: 297 RTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGP---------QG 347
R +PG G T P G + GP GP PGP Q
Sbjct: 424 RDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQ 483
Query: 348 GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD-----PERPCPGTRG 402
PP + ++HL +PL LP P + P A A P RP G G
Sbjct: 484 RPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP--ASQAAPPTQGQGRQSRPVAGGPG 541
Query: 403 VRSGREGLLSPAPRSALGETAPTAQ 427
SP+P+ G T Q
Sbjct: 542 APPAARPPASPSPQRQAGPPQATRQ 566
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 45.1 bits (105), Expect = 2e-04
Identities = 47/139 (33%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 286 PPLLGSSLGCPRTPTPGLTEG--GGTGLPSKQR----RGPSPKTELGGPQGSLGRASLSG 339
PP G P T+G G GLP K RG L GP G+LG G
Sbjct: 1019 PPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEG 1078
Query: 340 PFG-PGPQGGPPSRDRRHLGVQIGRVRAPLGSALP--YPARSELAPPGAQDALSPDPERP 396
P G PGP G P R P G+A P P R PG Q P E+
Sbjct: 1079 PPGPPGPAGSPGE-------------RGPAGAAGPIGIPGR-----PGPQGPPGPAGEKG 1120
Query: 397 CPGTRGVR--SGREGLLSP 413
PG +G + +GR+GL P
Sbjct: 1121 APGEKGPQGPAGRDGLQGP 1139
Score = 40.8 bits (94), Expect = 0.003
Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 305 EGGGTGLPSKQRRGPSPKTELG-----GPQGSLGRASLSGPFGP----GPQGGP-PSRDR 354
E G GLP + P P+ LG GP G G + G GP GPQG P P +
Sbjct: 668 EVGPRGLPGE----PGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQ 723
Query: 355 RHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
+ G Q + P G+ P + L PG D PG G + G P
Sbjct: 724 GNPGAQ--GLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPG 781
Query: 415 PRSALGETAP 424
P+ +G P
Sbjct: 782 PQGPIGYPGP 791
Score = 38.9 bits (89), Expect = 0.012
Identities = 40/142 (28%), Positives = 49/142 (34%), Gaps = 24/142 (16%)
Query: 292 SLGCPRTPTPGLTEGGGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFGPGPQG 347
S+G P P E GG G P K +RGP+ GP+G G+ G G
Sbjct: 884 SIGFPGFPGAN-GEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPA 942
Query: 348 GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPG--AQDALSPDPERPCPGTRGVRS 405
GPP R P G P PPG +D L PG RG
Sbjct: 943 GPPGE------------RGPNGPQGPTGFPGPKGPPGPPGKDGLPGH-----PGQRGETG 985
Query: 406 GREGLLSPAPRSALGETAPTAQ 427
+ P P +G PT +
Sbjct: 986 FQGKTGPPGPPGVVGPQGPTGE 1007
Score = 37.0 bits (84), Expect = 0.044
Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 27/143 (18%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR- 352
G P P GG RGP+ GPQG G GP GP + G P
Sbjct: 925 GITGKPGPKGNSGGDGPAGPPGERGPN------GPQGPTGFPGPKGPPGPPGKDGLPGHP 978
Query: 353 -DRRHLGVQ----------IGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
R G Q + + P G P R PPG P E+ PG
Sbjct: 979 GQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPG------PPGEQGLPGLA 1032
Query: 402 GVRSGREGLLSPAPRSALGETAP 424
G + G +G P P G+ P
Sbjct: 1033 G-KEGTKG--DPGPAGLPGKDGP 1052
Score = 37.0 bits (84), Expect = 0.044
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 327 GPQGSLGRASLSG-PFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGA 385
GPQG G A G P GPQ GP RD V + P+G + E+ PG
Sbjct: 1108 GPQGPPGPAGEKGAPGEKGPQ-GPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQ 1166
Query: 386 QDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 427
+ + E+ PG G + + P P A GE P Q
Sbjct: 1167 KGSKGDKGEQGPPGPTGPQG---PIGQPGPSGADGEPGPRGQ 1205
Score = 35.4 bits (80), Expect = 0.13
Identities = 45/161 (27%), Positives = 57/161 (35%), Gaps = 22/161 (13%)
Query: 284 RSPPLLGSSLGCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 341
R P +G P P P G G G P + +GP G QG +G +GP
Sbjct: 1092 RGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGE--KGPQGPAGRDGLQGPVGLPGPAGPV 1149
Query: 342 GP-------GPQGGPPSRDRRHLGVQIG-----RVRAPLGSALPYPARSELAPPGAQDAL 389
GP G G P + + + G + P+G P A E P G Q
Sbjct: 1150 GPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLF 1209
Query: 390 ---SPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 427
+ R PG G G +GL P P GET Q
Sbjct: 1210 GQKGDEGPRGFPGPPG-PVGLQGL--PGPPGEKGETGDVGQ 1247
Score = 35.4 bits (80), Expect = 0.13
Identities = 38/133 (28%), Positives = 49/133 (36%), Gaps = 21/133 (15%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP-----------PSRDRR 355
G G P K GP + GP G G GP GP GP P ++
Sbjct: 1426 GPQGAPGKP--GPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKG 1483
Query: 356 HLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV--RSGREGLLS- 412
H G+ IG + P + + PG Q + P E+ G G G GL
Sbjct: 1484 HPGL-IGLIGPPGEQG----EKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP 1538
Query: 413 PAPRSALGETAPT 425
P P+ A G + PT
Sbjct: 1539 PGPKGAKGSSGPT 1551
Score = 35.0 bits (79), Expect = 0.17
Identities = 65/259 (25%), Positives = 89/259 (34%), Gaps = 50/259 (19%)
Query: 202 ELREPAGTGPTLPGGRESSEAYPLPQLGAI-------GSGQAVAYGPFVLTQSSRPTDML 254
++ +P GP G ++ P P + G G A + GP V Q S+ +
Sbjct: 491 QVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQ-AQAI 549
Query: 255 LNSLATSLSSRRMPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEG-----GGT 309
L +L P + R PP G G P P G G
Sbjct: 550 LQQARLALRGPAGPMG------LTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPA 603
Query: 310 GLPSKQ-------RRGPSPKTELGGPQGSLGRASLSGPFG----PGPQG--GPPSRD-RR 355
G P ++ RG +T G +G G A L G G PGP G GPP D R
Sbjct: 604 GKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGER 663
Query: 356 HLGVQIG--------------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
++G + P G P PG + + P E PG +
Sbjct: 664 GDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQ 723
Query: 402 GVRSGREGLLSPAPRSALG 420
G G +GL P P+ A+G
Sbjct: 724 G-NPGAQGL--PGPQGAIG 739
Score = 34.3 bits (77), Expect = 0.29
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 319 PSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALP-YPAR 377
P P+ E GP+G GR +G PGP G P + + LGV LP YP R
Sbjct: 834 PGPRGE-DGPEGPKGRGGPNG--DPGPLGPPGEKGK--LGV----------PGLPGYPGR 878
Query: 378 SELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAPTAQ 427
P G+ PG G + GR P PR G T P +
Sbjct: 879 Q--GPKGSIGFPG------FPGANGEKGGRGTPGKPGPRGQRGPTGPRGE 920
Score = 34.3 bits (77), Expect = 0.29
Identities = 51/161 (31%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 297 RTPTPGLT-EGGGTGLPSKQRRGPSPKTELGGPQGSLGR---------ASLSGPFGP--- 343
+T +PG T E G +G P K RGP GP G GR A L GP G
Sbjct: 1373 QTGSPGPTGEPGPSGPPGK--RGPP------GPAGPEGRQGEKGAKGEAGLEGPPGKTGP 1424
Query: 344 -GPQGGP--PSRD-RRHLGVQIGRVRAPLGSALPYPARSELAP---PGAQDALSPDPERP 396
GPQG P P D R + +G P GS P + P PG + P E+
Sbjct: 1425 IGPQGAPGKPGPDGLRGIPGPVGEQGLP-GSPGPDGPPGPMGPPGLPGLKGDSGPKGEKG 1483
Query: 397 CPGTRGV--------RSGREGLLSP----APRSALGETAPT 425
PG G+ G GL P P+ G T P+
Sbjct: 1484 HPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPS 1524
Score = 33.9 bits (76), Expect = 0.37
Identities = 46/130 (35%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 288 LLGSSLGCPRTP-TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQ 346
LLG G P P PG+T G P K GP + G QG+ G L PGPQ
Sbjct: 683 LLGPK-GPPGPPGPPGVTGMDGQPGP-KGNVGPQGEPGPPGQQGNPGAQGL-----PGPQ 735
Query: 347 G--GPPSRDRRHLGVQIGRVRAPLGSALP-YPARSELAPPGAQDALS-PDPERPC--PGT 400
G GPP ++ LG + G P P +P + PPG + P P+ P PG
Sbjct: 736 GAIGPPG-EKGPLG-KPGLPGMPGADGPPGHPGKE--GPPGEKGGQGPPGPQGPIGYPGP 791
Query: 401 RGVRSGREGL 410
RGV+ G +G+
Sbjct: 792 RGVK-GADGI 800
Score = 33.5 bits (75), Expect = 0.49
Identities = 39/134 (29%), Positives = 45/134 (33%), Gaps = 10/134 (7%)
Query: 293 LGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP--QGSLGRASLSGPFGPGPQGGPP 350
+G P P P G P+ Q P K + G P GS G GP GP + GPP
Sbjct: 1341 VGFPGDPGPPGEPG-----PAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPP 1395
Query: 351 SRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGL 410
+ G P + P GA PD R PG G G G
Sbjct: 1396 GPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG-EQGLPG- 1453
Query: 411 LSPAPRSALGETAP 424
SP P G P
Sbjct: 1454 -SPGPDGPPGPMGP 1466
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 318 GPSPKTELGGPQGSLGRASLSGPFGP-------GPQG--GPPSRDRRHLGVQIGRVR 365
GP L GP G G SGP GP GP G GPP + L +Q R R
Sbjct: 1528 GPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTR 1584
Score = 32.0 bits (71), Expect = 1.4
Identities = 34/130 (26%), Positives = 41/130 (31%), Gaps = 10/130 (7%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTE-LGGPQGSLGRASLSGPFGPGPQGGPPSRDR 354
P+ P G+ G G + P GGP G G G GP GPP +
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPG-PK 1326
Query: 355 RHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
G P GS P + PPG D PG +G SP
Sbjct: 1327 GPPGDD-----GPKGSPGPVGFPGDPGPPGEPGPAGQDGP---PGDKGDDGEPGQTGSPG 1378
Query: 415 PRSALGETAP 424
P G + P
Sbjct: 1379 PTGEPGPSGP 1388
Score = 31.6 bits (70), Expect = 1.9
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 325 LGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGR-VRAPLGSALPYPARSELAPP 383
L GP G +G GP GP P G + +G Q R V+ P G A P
Sbjct: 557 LRGPAGPMGLTGRPGPVGP-PGSGGLKGEPGDVGPQGPRGVQGPPGPA---------GKP 606
Query: 384 GAQDALSPDPERPCPGTRGVRSGR--EGLLS-PAPRSALGETAPT 425
G + D R PG G + R +GL P + G+ P+
Sbjct: 607 GRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPS 651
Score = 31.6 bits (70), Expect = 1.9
Identities = 40/148 (27%), Positives = 47/148 (31%), Gaps = 22/148 (14%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELG-----------GPQGSLGRASLSGPFG 342
G P P P G GLP P K E G GP+G G GP G
Sbjct: 1219 GFPGPPGPV----GLQGLPGP----PGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQG 1270
Query: 343 -PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYP--ARSELAPPGAQDALSPDPERPCPG 399
PG G P + + + G P P P R E G A P + PG
Sbjct: 1271 PPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPG 1330
Query: 400 TRGVRSGREGLLSPAPRSALGETAPTAQ 427
G + + P GE P Q
Sbjct: 1331 DDGPKGSPGPVGFPGDPGPPGEPGPAGQ 1358
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 44.7 bits (104), Expect = 2e-04
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 305 EGGGTGLP------------SKQRRGPS--PKTELGGPQ--GSLGR-ASLSGPFGPGPQG 347
+GGG GLP ++QRR P+ P+ GG + G G+ A+ GP GP P G
Sbjct: 142 KGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG 201
Query: 348 GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSP 391
PPSR G + +R+P + PAR P GA +AL P
Sbjct: 202 APPSRRTPPPGPR-RPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 44.7 bits (104), Expect = 2e-04
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 305 EGGGTGLP------------SKQRRGPS--PKTELGGPQ--GSLGR-ASLSGPFGPGPQG 347
+GGG GLP ++QRR P+ P+ GG + G G+ A+ GP GP P G
Sbjct: 142 KGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG 201
Query: 348 GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSP 391
PPSR G + +R+P + PAR P GA +AL P
Sbjct: 202 APPSRRTPPPGPR-RPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 44.7 bits (104), Expect = 2e-04
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 305 EGGGTGLP------------SKQRRGPS--PKTELGGPQ--GSLGR-ASLSGPFGPGPQG 347
+GGG GLP ++QRR P+ P+ GG + G G+ A+ GP GP P G
Sbjct: 142 KGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG 201
Query: 348 GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSP 391
PPSR G + +R+P + PAR P GA +AL P
Sbjct: 202 APPSRRTPPPGPR-RPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 44.3 bits (103), Expect = 3e-04
Identities = 47/144 (32%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 296 PRTPTPGLTEG---GGTGLPSKQRRGPS-PKTELGGP-----QGSLGRASLSGPFG-PGP 345
P P P G G GLP K GP K ELG P G G + GP G PGP
Sbjct: 60 PLFPPPFFRGGRSPGPPGLPGKT--GPKGEKGELGRPGRKGRPGPPGVPGMPGPIGWPGP 117
Query: 346 QGGPPSRDRRHLGVQ-IGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVR 404
+G P ++ LG+ + R P+GS +R E G + L P E+ PG G+
Sbjct: 118 EG--PRGEKGDLGMMGLPGSRGPMGSKGYPGSRGEKGSRGEKGDLGPKGEKGFPGFPGM- 174
Query: 405 SGREGLLSPAPRSAL-GETAPTAQ 427
G++G + P + G PT +
Sbjct: 175 LGQKGEMGPKGEPGIAGHRGPTGR 198
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 25/87 (28%)
Query: 317 RGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYP 375
RGP+ + G QG G + + GP G PGP G P GR P
Sbjct: 193 RGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQP------------GRPGPP-------- 232
Query: 376 ARSELAPPGAQDALSPDPERPCPGTRG 402
PP Q + P ER PG G
Sbjct: 233 ----GPPPAGQLIMGPKGERGFPGPPG 255
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 44.3 bits (103), Expect = 3e-04
Identities = 43/145 (29%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 294 GCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTE----LGGPQGSLGRASLSGPFGPGPQG 347
G P +P P G G G+P + +P GP+G G +GP GP Q
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 455
Query: 348 GPP-------SRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGT 400
G P + + G AP G A R PG + P ER PG
Sbjct: 456 GEPGIAGFKGEQGPKGEPGPAGPQGAP-GPAGEEGKRGARGEPGGVGPIGPPGERGAPGN 514
Query: 401 RGVRSGREGLLSPAPRSALGETAPT 425
RG G++GL P+ A GE P+
Sbjct: 515 RGF-PGQDGL--AGPKGAPGERGPS 536
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 4/136 (2%)
Query: 296 PRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLG-RASLSGPFGPGPQGGPPSRD 353
P P + GG G P +G + T GP+G+ G R P PGP G +
Sbjct: 352 PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPG 411
Query: 354 RRHLGVQIGRVRAP-LGSALPYPA-RSELAPPGAQDALSPDPERPCPGTRGVRSGREGLL 411
+ G AP + A +P R P GA L P + PG G + +
Sbjct: 412 TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKG 471
Query: 412 SPAPRSALGETAPTAQ 427
P P G P +
Sbjct: 472 EPGPAGPQGAPGPAGE 487
Score = 39.7 bits (91), Expect = 0.007
Identities = 45/133 (33%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG-----GPPSRDR 354
PGL G +G P KQ G + GP G +G L+GP G PG +G GPP RD
Sbjct: 995 PGLP--GPSGEPGKQ--GAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD- 1049
Query: 355 RHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPC--PGTRGVRSGREGLLS 412
V+ G A PPG SP P P G RG +G +G +
Sbjct: 1050 -----GAAGVKGDRGETGAVGAPGAPGPPG-----SPGPAGPTGKQGDRG-EAGAQGPMG 1098
Query: 413 PA-PRSALGETAP 424
P+ P A G P
Sbjct: 1099 PSGPAGARGIQGP 1111
Score = 37.7 bits (86), Expect = 0.026
Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 9/141 (6%)
Query: 285 SPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFGP 343
+P + G S +PG G GLP ++ R GP+ G G G A GP GP
Sbjct: 304 APGVKGESGSPGENGSPGPM--GPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP 361
Query: 344 GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV 403
GGP + G P G+ P A+ PG + P PGT G+
Sbjct: 362 A--GGPGFPGAPGAKGEAG----PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI 415
Query: 404 RSGREGLLSPAPRSALGETAP 424
+ +P A G P
Sbjct: 416 PGAKGSAGAPGIAGAPGFPGP 436
Score = 37.0 bits (84), Expect = 0.044
Identities = 42/148 (28%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 292 SLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----GPQG 347
++G P P P + G + RG + GP G G + GP GP G G
Sbjct: 1063 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1122
Query: 348 GPPSR----DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV 403
P R R G+Q LP P GA P R PG G
Sbjct: 1123 EPGERGLKGHRGFTGLQ----------GLPGPP-GPSGDQGASGPAGPSGPRGPPGPVG- 1170
Query: 404 RSGREG-------LLSPAPRSALGETAP 424
SG++G + P PR GET P
Sbjct: 1171 PSGKDGANGIPGPIGPPGPRGRSGETGP 1198
Score = 36.2 bits (82), Expect = 0.075
Identities = 39/118 (33%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 294 GCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-------G 344
G P TP +G G G P Q GP L G G G A ++GP G G
Sbjct: 720 GLPGTPGTDGPKGASGPAGPPGAQ--GPPG---LQGMPGERGAAGIAGPKGDRGDVGEKG 774
Query: 345 PQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
P+G P R L IG P G A + E+ PPG + R PG RG
Sbjct: 775 PEGAPGKDGGRGLTGPIG----PPGPAGANGEKGEVGPPGPAGSAG---ARGAPGERG 825
Score = 35.4 bits (80), Expect = 0.13
Identities = 43/120 (35%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 305 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 364
E G G P GP+ + G G G L GP GP +GG P GV G
Sbjct: 637 ETGAAGPPGPA--GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ----GVP-GEA 689
Query: 365 RAPLGSALPYPAR---SELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA-PRSALG 420
AP G P R E PGAQ P R PGT G G +G PA P A G
Sbjct: 690 GAP-GLVGPRGERGFPGERGSPGAQGLQGP---RGLPGTPGT-DGPKGASGPAGPPGAQG 744
Score = 35.0 bits (79), Expect = 0.17
Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR 355
PR E G GL K RG + L GP G G SGP GP GPP
Sbjct: 1114 PRGDKGEAGEPGERGL--KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1171
Query: 356 HLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
+ P+G P E P G +P P P PG G
Sbjct: 1172 SGKDGANGIPGPIGPPGPRGRSGETGPAGPPG--NPGPPGP-PGPPG 1215
Score = 34.7 bits (78), Expect = 0.22
Identities = 38/112 (33%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 307 GGTGLPSKQRR-GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 365
G TG P R GP GP G G + GP G GPP R G+Q G
Sbjct: 894 GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR-AGEPGLQ-GPAG 951
Query: 366 APLGSALP---YPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
P P P+ +E PPG Q PG RG R G GL P+
Sbjct: 952 PPGEKGEPGDDGPSGAE-GPPGPQGLAGQRGIVGLPGQRGER-GFPGLPGPS 1001
Score = 33.9 bits (76), Expect = 0.37
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 307 GGTGLPSKQRRGPSPKTELG----GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIG 362
G G P + R P T GP G G L G F GG D + G Q+G
Sbjct: 141 GEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG---FDEKAGGAQLG 197
Query: 363 RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
++ P+G P PPG A P + PG G G G + P
Sbjct: 198 VMQGPMGPMGP------RGPPGPAGAPGPQGFQGNPGEPG-EPGVSGPMGP 241
Score = 33.9 bits (76), Expect = 0.37
Identities = 39/131 (29%), Positives = 48/131 (36%), Gaps = 21/131 (16%)
Query: 296 PRTPTPGLTEGGGTGL--PSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--GPP 350
P+ P+ G TG+ P R P G P G+ GR G G PGP G GP
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP-GAAGRVGPPGSNGNPGPPGPPGPS 923
Query: 351 SRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGL 410
+D P G+ PG Q P E+ PG G SG EG
Sbjct: 924 GKD------------GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG-PSGAEG- 969
Query: 411 LSPAPRSALGE 421
P P+ G+
Sbjct: 970 -PPGPQGLAGQ 979
Score = 33.5 bits (75), Expect = 0.49
Identities = 40/140 (28%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----------GPQGGPPSRDRRH 356
G +G P + R P GPQG+ G+ + G GP G +G P + R
Sbjct: 576 GPSGAPGEDGRPGPP-----GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 630
Query: 357 LGVQIGRVRA--PLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
L + G A P G A P R E PG P P P G + G +G+ P
Sbjct: 631 LPGKDGETGAAGPPGPAGPAGERGEQGAPG-PSGFQGLPGPPGPPGEGGKPGDQGV--PG 687
Query: 415 PRSALGETAPTAQFTFRKRR 434
A G P + F R
Sbjct: 688 EAGAPGLVGPRGERGFPGER 707
Score = 33.5 bits (75), Expect = 0.49
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 38/139 (27%)
Query: 307 GGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFG----------PGPQG--GPPSRD 353
G G P ++ GP GP G+ G+ G G PGPQG G P
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG-- 873
Query: 354 RRHLGVQIGRVRAPLGSALPYPARSELAP------PGAQDALSPDPERPCPGTRGV--RS 405
+ P G P AR P PGA + P PG G S
Sbjct: 874 ----------PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 923
Query: 406 GREGLLSPAPRSALGETAP 424
G++G P+ A G++ P
Sbjct: 924 GKDG-----PKGARGDSGP 937
Score = 33.1 bits (74), Expect = 0.64
Identities = 35/121 (28%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 290 GSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP 349
G+ LG + P + G P P P+ G P G G +SGP GP GP
Sbjct: 193 GAQLGVMQGPMGPMGPRG----PPGPAGAPGPQGFQGNP-GEPGEPGVSGPMGPRGPPGP 247
Query: 350 PSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREG 409
P + G A E PPG Q A PG +G R G G
Sbjct: 248 PGKP------------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR-GYPG 294
Query: 410 L 410
L
Sbjct: 295 L 295
Score = 33.1 bits (74), Expect = 0.64
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVR 365
G G P RG + L GP+G+ G SG GP G G P L G
Sbjct: 507 GERGAPGN--RGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTG 564
Query: 366 APLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGE 421
P G A P + ++ P GA D PG +G R G+ G++ P P+ A GE
Sbjct: 565 RP-GDAGP---QGKVGPSGAP---GEDGRPGPPGPQGAR-GQPGVMGFPGPKGANGE 613
Score = 31.6 bits (70), Expect = 1.9
Identities = 44/144 (30%), Positives = 50/144 (34%), Gaps = 31/144 (21%)
Query: 284 RSPPLLGSSLGCPRTP-TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 342
R PP + G P TP PG+ G G P L G +G G + G G
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVK--GHRGYPG-----------LDGAKGEAGAPGVKGESG 312
Query: 343 -PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
PG G P R L + GR P G+A AR PG A P P P G
Sbjct: 313 SPGENGSPGPMGPRGLPGERGRT-GPAGAA---GARGNDGQPGP--AGPPGPVGPAGGPG 366
Query: 402 GVRSGREGLLSPAPRSALGETAPT 425
P A GE PT
Sbjct: 367 ----------FPGAPGAKGEAGPT 380
Score = 31.2 bits (69), Expect = 2.4
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 17/123 (13%)
Query: 318 GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD-------RRHLGVQIGRVRA---- 366
GP G +G+ G +GP GP GPP D + Q G A
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866
Query: 367 -PLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLS----PAPRSALGE 421
P G+ P P GA+ A P PG G R G G P P G+
Sbjct: 867 GPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-RVGPPGSNGNPGPPGPPGPSGK 925
Query: 422 TAP 424
P
Sbjct: 926 DGP 928
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 44.3 bits (103), Expect = 3e-04
Identities = 43/145 (29%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 294 GCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTE----LGGPQGSLGRASLSGPFGPGPQG 347
G P +P P G G G+P + +P GP+G G +GP GP Q
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 386
Query: 348 GPP-------SRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGT 400
G P + + G AP G A R PG + P ER PG
Sbjct: 387 GEPGIAGFKGEQGPKGEPGPAGPQGAP-GPAGEEGKRGARGEPGGVGPIGPPGERGAPGN 445
Query: 401 RGVRSGREGLLSPAPRSALGETAPT 425
RG G++GL P+ A GE P+
Sbjct: 446 RGF-PGQDGL--AGPKGAPGERGPS 467
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 4/136 (2%)
Query: 296 PRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLG-RASLSGPFGPGPQGGPPSRD 353
P P + GG G P +G + T GP+G+ G R P PGP G +
Sbjct: 283 PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPG 342
Query: 354 RRHLGVQIGRVRAP-LGSALPYPA-RSELAPPGAQDALSPDPERPCPGTRGVRSGREGLL 411
+ G AP + A +P R P GA L P + PG G + +
Sbjct: 343 TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKG 402
Query: 412 SPAPRSALGETAPTAQ 427
P P G P +
Sbjct: 403 EPGPAGPQGAPGPAGE 418
Score = 39.7 bits (91), Expect = 0.007
Identities = 45/133 (33%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG-----GPPSRDR 354
PGL G +G P KQ G + GP G +G L+GP G PG +G GPP RD
Sbjct: 926 PGLP--GPSGEPGKQ--GAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD- 980
Query: 355 RHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPC--PGTRGVRSGREGLLS 412
V+ G A PPG SP P P G RG +G +G +
Sbjct: 981 -----GAAGVKGDRGETGAVGAPGAPGPPG-----SPGPAGPTGKQGDRG-EAGAQGPMG 1029
Query: 413 PA-PRSALGETAP 424
P+ P A G P
Sbjct: 1030 PSGPAGARGIQGP 1042
Score = 37.7 bits (86), Expect = 0.026
Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 9/141 (6%)
Query: 285 SPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFGP 343
+P + G S +PG G GLP ++ R GP+ G G G A GP GP
Sbjct: 235 APGVKGESGSPGENGSPGPM--GPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP 292
Query: 344 GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV 403
GGP + G P G+ P A+ PG + P PGT G+
Sbjct: 293 A--GGPGFPGAPGAKGEAG----PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI 346
Query: 404 RSGREGLLSPAPRSALGETAP 424
+ +P A G P
Sbjct: 347 PGAKGSAGAPGIAGAPGFPGP 367
Score = 37.0 bits (84), Expect = 0.044
Identities = 42/148 (28%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 292 SLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----GPQG 347
++G P P P + G + RG + GP G G + GP GP G G
Sbjct: 994 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053
Query: 348 GPPSR----DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGV 403
P R R G+Q LP P GA P R PG G
Sbjct: 1054 EPGERGLKGHRGFTGLQ----------GLPGPP-GPSGDQGASGPAGPSGPRGPPGPVG- 1101
Query: 404 RSGREG-------LLSPAPRSALGETAP 424
SG++G + P PR GET P
Sbjct: 1102 PSGKDGANGIPGPIGPPGPRGRSGETGP 1129
Score = 36.2 bits (82), Expect = 0.075
Identities = 39/118 (33%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 294 GCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-------G 344
G P TP +G G G P Q GP L G G G A ++GP G G
Sbjct: 651 GLPGTPGTDGPKGASGPAGPPGAQ--GPPG---LQGMPGERGAAGIAGPKGDRGDVGEKG 705
Query: 345 PQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
P+G P R L IG P G A + E+ PPG + R PG RG
Sbjct: 706 PEGAPGKDGGRGLTGPIG----PPGPAGANGEKGEVGPPGPAGSAG---ARGAPGERG 756
Score = 35.4 bits (80), Expect = 0.13
Identities = 43/120 (35%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 305 EGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRV 364
E G G P GP+ + G G G L GP GP +GG P GV G
Sbjct: 568 ETGAAGPPGPA--GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ----GVP-GEA 620
Query: 365 RAPLGSALPYPAR---SELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA-PRSALG 420
AP G P R E PGAQ P R PGT G G +G PA P A G
Sbjct: 621 GAP-GLVGPRGERGFPGERGSPGAQGLQGP---RGLPGTPGT-DGPKGASGPAGPPGAQG 675
Score = 35.0 bits (79), Expect = 0.17
Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRR 355
PR E G GL K RG + L GP G G SGP GP GPP
Sbjct: 1045 PRGDKGEAGEPGERGL--KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1102
Query: 356 HLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
+ P+G P E P G +P P P PG G
Sbjct: 1103 SGKDGANGIPGPIGPPGPRGRSGETGPAGPPG--NPGPPGP-PGPPG 1146
Score = 34.7 bits (78), Expect = 0.22
Identities = 38/112 (33%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 307 GGTGLPSKQRR-GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVR 365
G TG P R GP GP G G + GP G GPP R G+Q G
Sbjct: 825 GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR-AGEPGLQ-GPAG 882
Query: 366 APLGSALP---YPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
P P P+ +E PPG Q PG RG R G GL P+
Sbjct: 883 PPGEKGEPGDDGPSGAE-GPPGPQGLAGQRGIVGLPGQRGER-GFPGLPGPS 932
Score = 33.9 bits (76), Expect = 0.37
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 307 GGTGLPSKQRRGPSPKTELG----GPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIG 362
G G P + R P T GP G G L G F GG D + G Q+G
Sbjct: 72 GEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG---FDEKAGGAQLG 128
Query: 363 RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
++ P+G P PPG A P + PG G G G + P
Sbjct: 129 VMQGPMGPMGP------RGPPGPAGAPGPQGFQGNPGEPG-EPGVSGPMGP 172
Score = 33.9 bits (76), Expect = 0.37
Identities = 39/131 (29%), Positives = 48/131 (36%), Gaps = 21/131 (16%)
Query: 296 PRTPTPGLTEGGGTGL--PSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQG--GPP 350
P+ P+ G TG+ P R P G P G+ GR G G PGP G GP
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP-GAAGRVGPPGSNGNPGPPGPPGPS 854
Query: 351 SRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGL 410
+D P G+ PG Q P E+ PG G SG EG
Sbjct: 855 GKD------------GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG-PSGAEG- 900
Query: 411 LSPAPRSALGE 421
P P+ G+
Sbjct: 901 -PPGPQGLAGQ 910
Score = 33.5 bits (75), Expect = 0.49
Identities = 40/140 (28%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----------GPQGGPPSRDRRH 356
G +G P + R P GPQG+ G+ + G GP G +G P + R
Sbjct: 507 GPSGAPGEDGRPGPP-----GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 561
Query: 357 LGVQIGRVRA--PLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
L + G A P G A P R E PG P P P G + G +G+ P
Sbjct: 562 LPGKDGETGAAGPPGPAGPAGERGEQGAPG-PSGFQGLPGPPGPPGEGGKPGDQGV--PG 618
Query: 415 PRSALGETAPTAQFTFRKRR 434
A G P + F R
Sbjct: 619 EAGAPGLVGPRGERGFPGER 638
Score = 33.5 bits (75), Expect = 0.49
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 38/139 (27%)
Query: 307 GGTGLPSKQ-RRGPSPKTELGGPQGSLGRASLSGPFG----------PGPQG--GPPSRD 353
G G P ++ GP GP G+ G+ G G PGPQG G P
Sbjct: 747 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG-- 804
Query: 354 RRHLGVQIGRVRAPLGSALPYPARSELAP------PGAQDALSPDPERPCPGTRGV--RS 405
+ P G P AR P PGA + P PG G S
Sbjct: 805 ----------PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 854
Query: 406 GREGLLSPAPRSALGETAP 424
G++G P+ A G++ P
Sbjct: 855 GKDG-----PKGARGDSGP 868
Score = 33.1 bits (74), Expect = 0.64
Identities = 35/121 (28%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 290 GSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP 349
G+ LG + P + G P P P+ G P G G +SGP GP GP
Sbjct: 124 GAQLGVMQGPMGPMGPRG----PPGPAGAPGPQGFQGNP-GEPGEPGVSGPMGPRGPPGP 178
Query: 350 PSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREG 409
P + G A E PPG Q A PG +G R G G
Sbjct: 179 PGKP------------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR-GYPG 225
Query: 410 L 410
L
Sbjct: 226 L 226
Score = 33.1 bits (74), Expect = 0.64
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP-GPQGGPPSRDRRHLGVQIGRVR 365
G G P RG + L GP+G+ G SG GP G G P L G
Sbjct: 438 GERGAPGN--RGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTG 495
Query: 366 APLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLS-PAPRSALGE 421
P G A P + ++ P GA D PG +G R G+ G++ P P+ A GE
Sbjct: 496 RP-GDAGP---QGKVGPSGAP---GEDGRPGPPGPQGAR-GQPGVMGFPGPKGANGE 544
Score = 31.6 bits (70), Expect = 1.9
Identities = 44/144 (30%), Positives = 50/144 (34%), Gaps = 31/144 (21%)
Query: 284 RSPPLLGSSLGCPRTP-TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG 342
R PP + G P TP PG+ G G P L G +G G + G G
Sbjct: 197 RGPPGPQGARGFPGTPGLPGVK--GHRGYPG-----------LDGAKGEAGAPGVKGESG 243
Query: 343 -PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
PG G P R L + GR P G+A AR PG A P P P G
Sbjct: 244 SPGENGSPGPMGPRGLPGERGRT-GPAGAA---GARGNDGQPGP--AGPPGPVGPAGGPG 297
Query: 402 GVRSGREGLLSPAPRSALGETAPT 425
P A GE PT
Sbjct: 298 ----------FPGAPGAKGEAGPT 311
Score = 31.2 bits (69), Expect = 2.4
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 17/123 (13%)
Query: 318 GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD-------RRHLGVQIGRVRA---- 366
GP G +G+ G +GP GP GPP D + Q G A
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797
Query: 367 -PLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLS----PAPRSALGE 421
P G+ P P GA+ A P PG G R G G P P G+
Sbjct: 798 GPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-RVGPPGSNGNPGPPGPPGPSGK 856
Query: 422 TAP 424
P
Sbjct: 857 DGP 859
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 44.3 bits (103), Expect = 3e-04
Identities = 43/139 (30%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 296 PRTPTPGLTEGGGTGLPSKQRRGPSPKTE-LGGPQGSLGRASLSGPFG-------PGPQG 347
PR PT + G G P + G +P + GP+GS G +GP G PG G
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNG 819
Query: 348 GPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRS-- 405
P + R + G P G A P PPG Q ER PG G
Sbjct: 820 EPGGKGERGAPGEKGE-GGPPGVAGPPGGSGPAGPPGPQGVKG---ERGSPGGPGAAGFP 875
Query: 406 GREGLLSPAPRSALGETAP 424
G GL P P + G P
Sbjct: 876 GARGL--PGPPGSNGNPGP 892
Score = 43.9 bits (102), Expect = 4e-04
Identities = 50/152 (32%), Positives = 58/152 (38%), Gaps = 25/152 (16%)
Query: 284 RSPPLLGSSLGCPRTPTPGLTEGGG----TGLPSKQRRGPSPKTELGGPQGSLGRASLSG 339
+ PP G P+ P PG T GG TG P Q P T GGP G G+ G
Sbjct: 605 QGPPGKNGETG-PQGP-PGPTGPGGDKGDTGPPGPQGLQGLPGT--GGPPGENGKPGEPG 660
Query: 340 PFG----PGPQGG------PPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDAL 389
P G PG GG P R L G +R G P + PPG A
Sbjct: 661 PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPG-LRGGAGPPGPEGGKGAAGPPGPPGAA 719
Query: 390 SPDPERPCPGTRGVRSGREGLLSPAPRSALGE 421
PG +G+ R GL SP P+ GE
Sbjct: 720 GT------PGLQGMPGERGGLGSPGPKGDKGE 745
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/154 (29%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 300 TPGLTEGGGTGLPSKQR-------RGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR 352
+PG E G GLP RGP+ + G +G G GP GP G P R
Sbjct: 469 SPG--EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGR 526
Query: 353 DRRHLGVQIG-RVRAPLGSALPYPARSELAPPGAQ-DALSPDPERP-------------- 396
D GV G +R GS + + PPG+Q ++ P P P
Sbjct: 527 D----GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPG 582
Query: 397 ------CPGTRGVRSGREGLLSPAPRSALGETAP 424
PG G R G G P GET P
Sbjct: 583 PKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGP 616
Score = 35.4 bits (80), Expect = 0.13
Identities = 49/165 (29%), Positives = 55/165 (33%), Gaps = 31/165 (18%)
Query: 286 PPLLGSSLGCPRTPTPGLTEG-----------GGTGLPSK--QRRGPSPKTELGGPQGSL 332
PP G P P P G G G P K +R GP GPQG
Sbjct: 553 PPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP----GPQGPP 608
Query: 333 GRASLSGPFGPG-PQG--------GPPS----RDRRHLGVQIGRVRAPLGSALPYPARSE 379
G+ +GP GP P G GPP + G G P A +
Sbjct: 609 GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAP 668
Query: 380 LAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSALGETAP 424
AP G DA +P ER PG G R G P P G P
Sbjct: 669 GAPGGKGDAGAPG-ERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP 712
Score = 33.9 bits (76), Expect = 0.37
Identities = 35/112 (31%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 307 GGTGLPSKQRRGPSPK--TELGGPQGSLGRASLSGPFG-PGPQGGPPSRDRRHLGVQIGR 363
G GL S +R P P+ L G G GR G G PG G P + R G
Sbjct: 984 GANGL-SGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA 1042
Query: 364 VRAPLGSALPYPA--------RSELAPPGAQDALSPDPERPCPGTRGVRSGR 407
AP P P R E P G A P R PG +G R +
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDK 1094
Score = 33.1 bits (74), Expect = 0.64
Identities = 43/138 (31%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG-PGPQGGPPSR 352
G P P P G G P P K E+ GP GS G G G PGPQG
Sbjct: 330 GQPGPPGP----PGTAGFPG----SPGAKGEV-GPAGSPGSNGAPGQRGEPGPQG----- 375
Query: 353 DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSG---REG 409
H G Q G P + P + E+ P G A R PG G R G
Sbjct: 376 ---HAGAQ-GPPGPPGINGSP-GGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
Query: 410 LLSPAPRSALGETAPTAQ 427
P A GE P +
Sbjct: 431 AGEPGKNGAKGEPGPRGE 448
Score = 32.7 bits (73), Expect = 0.83
Identities = 38/131 (29%), Positives = 46/131 (35%), Gaps = 6/131 (4%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP--PS 351
G P P P G + GP+ GP GS G GP G + G +
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAA 1103
Query: 352 RDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLL 411
+ H G G AP GS P + + PG P PG G SG G +
Sbjct: 1104 GIKGHRGFP-GNPGAP-GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGT-SGHPGPI 1160
Query: 412 S-PAPRSALGE 421
P PR GE
Sbjct: 1161 GPPGPRGNRGE 1171
Score = 32.7 bits (73), Expect = 0.83
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRD--RRHLGVQIGRV 364
G G P SP G QG++G +GP GP GPP +D H G
Sbjct: 1107 GHRGFPGNPGAPGSPGP--AGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPG------ 1158
Query: 365 RAPLGSALPYPARSELAPPGAQ-DALSPDPERPCPGTRGVRSGREG 409
P+G P R E G+ P P P PG G G G
Sbjct: 1159 --PIGPPGPRGNRGERGSEGSPGHPGQPGPPGP-PGAPGPCCGGVG 1201
Score = 32.3 bits (72), Expect = 1.1
Identities = 43/145 (29%), Positives = 50/145 (34%), Gaps = 26/145 (17%)
Query: 284 RSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP 343
R PP L + PGL G G P + P GP G+ G L G P
Sbjct: 683 RGPPGLAGA--------PGLRGGAGPPGPEGGKGAAGPP----GPPGAAGTPGLQGM--P 728
Query: 344 GPQGG----PPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPG 399
G +GG P D+ G G P G P + PPG E PG
Sbjct: 729 GERGGLGSPGPKGDKGEPGGP-GADGVP-GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPG 786
Query: 400 TRGVRSGREGLLSPAPRSALGETAP 424
G+ R SP R GET P
Sbjct: 787 LPGIAGPRG---SPGER---GETGP 805
Score = 32.0 bits (71), Expect = 1.4
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 294 GCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPS 351
G P P P T G G G P Q GP + GP G G GP GP + G
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQ--GPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG 234
Query: 352 RDRR 355
R R
Sbjct: 235 RPGR 238
Score = 31.6 bits (70), Expect = 1.9
Identities = 40/139 (28%), Positives = 49/139 (35%), Gaps = 9/139 (6%)
Query: 282 RSRSPPLLGSSLGCPRTP-TPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGP 340
R+ P + G G P +P PG+ E TG + + S + G G L A GP
Sbjct: 119 RNGDPGIPGQP-GSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGL--AGYPGP 175
Query: 341 FGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSP---DPERPC 397
GP GPP + P G PPGA P D E
Sbjct: 176 AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGR 235
Query: 398 PGTRGVRS--GREGLLSPA 414
PG G R G G+ PA
Sbjct: 236 PGRPGERGLPGPPGIKGPA 254
Score = 31.2 bits (69), Expect = 2.4
Identities = 32/126 (25%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRA 366
G G P ++ G P + GP G G A GP G + G P G
Sbjct: 825 GERGAPGEKGEGGPPG--VAGPPGGSGPAGPPGPQGVKGERGSPGGP--------GAAGF 874
Query: 367 PLGSALPYPARSELAP--------PGAQDALSPDPERPCPGTRGVRSGREGLLSPAPRSA 418
P LP P S P PG P PG+ GV + P + +
Sbjct: 875 PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGS 934
Query: 419 LGETAP 424
G P
Sbjct: 935 PGAQGP 940
Score = 30.8 bits (68), Expect = 3.2
Identities = 37/137 (27%), Positives = 46/137 (33%), Gaps = 17/137 (12%)
Query: 290 GSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGP 349
GS P P E G G P G L GP GS G GP G + GP
Sbjct: 847 GSGPAGPPGPQGVKGERGSPGGPGAA--GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGP 904
Query: 350 PSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVR--SGR 407
P G AP + P + + PG + + PG G+ +G
Sbjct: 905 PG--------PAGNTGAPGSPGVSGP-KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGA 955
Query: 408 EGLLS----PAPRSALG 420
GL P PR + G
Sbjct: 956 RGLAGPPGMPGPRGSPG 972
Score = 30.0 bits (66), Expect = 5.4
Identities = 47/148 (31%), Positives = 53/148 (35%), Gaps = 30/148 (20%)
Query: 294 GCPRTPTP----GLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG------- 342
G P P P G+T G P P P+ GPQG G + G G
Sbjct: 939 GPPGAPGPLGIAGITGARGLAGPPGM---PGPRGS-PGPQGVKGESGKPGANGLSGERGP 994
Query: 343 PGPQG--------GPPSRDRRHLGVQI-GRVRAPLGSALPYPARSELAPPGAQDALSPDP 393
PGPQG G P RD + GR +P G R E PGA A P
Sbjct: 995 PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKG----DRGENGSPGAPGA-PGHP 1049
Query: 394 ERPCPGTRGVRSGREGLLSPA-PRSALG 420
P P +SG G PA P A G
Sbjct: 1050 GPPGPVGPAGKSGDRGESGPAGPAGAPG 1077
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 44.3 bits (103), Expect = 3e-04
Identities = 87/383 (22%), Positives = 126/383 (32%), Gaps = 54/383 (14%)
Query: 56 LHRGASTKGLLTGGVWGLHSWPIGDGRATIHEAVVRASPWPSRLGTIHGVRGGGDVQEGA 115
L RGA+T G+ T V SW ++ASP + G +
Sbjct: 1306 LRRGATTLGVTTPAV----SWGDAPTEVVACSGSLKASPTSKK----------GLAPKAG 1351
Query: 116 ELPAVLLTVAVVQSSGSSSKSKSEDDAFLPQRNLRETPISQKPLLN------PSSTQGLT 169
LP + SS + A P + + +L PSS +
Sbjct: 1352 FLPRPSGAAPPAPPTRKSSLEQRSSPASAPPHAVNPARVGAAAVLRGEEEPRPSSRADHS 1411
Query: 170 KPLADGTAQWNGQETECQDDCFLGKSDLQNFEELREPAGTGPTLPGGRESSEAYPLPQLG 229
P A + + + E G + L+ +E L + G PG + +P+LG
Sbjct: 1412 VPRATSSLKARASKVEAAHR-LAGHASLERYEGLAHSSSKGREAPGRPPRA----VPKLG 1466
Query: 230 AIGSGQAVAYGPFVLTQSSR----PTDMLLNSLATSLSSRRMPSSCPMTIFMRCRIRSRS 285
S P + +++ P + L + + P + RS
Sbjct: 1467 VPPSSPTHGPAPACRSGAAKAVGAPKPPVGGGKGRGLVAGGSRALGPSVKLSTASVTGRS 1526
Query: 286 P--PLLGSSLGCPRTPTPGLTEGGGTGLPSKQ--RRGPSPKTELGGPQGSLGRASLSGPF 341
P P+ G P+ G G GT + +KQ R S EL G+ GR
Sbjct: 1527 PGGPVAGPRAAPRAGPSVGAKAGRGTVMGTKQALRAAHSRVHELSA-SGAPGRG------ 1579
Query: 342 GPGPQGGPPSRDRRH-LGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGT 400
G G D H GV +G R P G ALP P A P RP +
Sbjct: 1580 --GSSWGSADSDSGHDSGVNVGEERPPTGPALPSPYSKVTA-----------PRRPQRYS 1626
Query: 401 RGVRSGREGLLSPAPRSALGETA 423
G S +LS A+G TA
Sbjct: 1627 SGHGSDNSSVLSGELPPAMGRTA 1649
Score = 30.0 bits (66), Expect = 5.4
Identities = 62/243 (25%), Positives = 89/243 (36%), Gaps = 33/243 (13%)
Query: 180 NGQETECQDDCFLGKSDLQNFEELR---EPAGTGPTLPGGRE--SSEAYPLPQLGAIGSG 234
+G E+ C++ L+ F +P T P LPG + SS + +G G
Sbjct: 737 SGGESSCEEGRARRPPHLRPFHPRTVALDPDRTPPCLPGDPDYSSSSEQSCDTVIYVGPG 796
Query: 235 QAVAYGPFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTI-FMRCRIRSRSPPLLGSSL 293
A A LT + P D + + +LS R PS P RC + L
Sbjct: 797 GA-ALSDRELTDNEGPPDFV--PIIPALSRHR-PSKGPRDADHFRCSTFAELQERLECMD 852
Query: 294 GCPR-TPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR 352
G + PG T+G P++ R PSP P+ + R ++ P G
Sbjct: 853 GNEGPSGGPGGTDGAQAS-PARGGRKPSP------PEAASPRKAVGTPMAASTPRGSSGP 905
Query: 353 DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLS 412
D H G P P ++ + +D+ S PE P V GR L S
Sbjct: 906 DT-HQGT-------------PEPCKAIVWGDQREDS-SAWPELLVPEKAAVSGGRRPLPS 950
Query: 413 PAP 415
PAP
Sbjct: 951 PAP 953
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 43.9 bits (102), Expect = 4e-04
Identities = 56/186 (30%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 292 SLGCPRTPTPGLTEGGGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFG----- 342
SLG P P E G GL K RGP+ GP+G+ G++ G G
Sbjct: 726 SLGFPGFPGAS-GEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPH 784
Query: 343 --------PGPQG-----------GPPSRD--------RRHLGVQIGRV--RAPLGSALP 373
PGPQG GPP +D R +G Q G+ P G P
Sbjct: 785 GPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQ-GKTGPPGPPGVVGP 843
Query: 374 YPARSELAPPGAQDALSPDPERPCPGTRGV--RSGREGLL-SPAPRSALGETAPTAQFTF 430
A E P G + P P P PG +G+ +G+EG P P A G+ P F
Sbjct: 844 QGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 900
Query: 431 RKRRPL 436
R L
Sbjct: 901 PGERGL 906
Score = 39.3 bits (90), Expect = 0.009
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRRHLGVQIG 362
GG GL K GPS G G G A GP GP PQG P + + + + G
Sbjct: 911 GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 968
Query: 363 --------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
V+ P+G LP PA PPG E PG +G + + P
Sbjct: 969 PIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPG 1022
Query: 415 PRSALG 420
P +G
Sbjct: 1023 PPGPIG 1028
Score = 38.5 bits (88), Expect = 0.015
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 283 SRSPPLLGS-SLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 341
S SP + G + PR E G G P GP T GP+G+ G G
Sbjct: 1132 SGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP--GPKGPTGDDGPKGNPGPVGFPGDP 1189
Query: 342 GPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
GP +GGP +D G P P P E PPG P PG+
Sbjct: 1190 GPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GENGPPGPLGKRGP---AGSPGSE 1243
Query: 402 GVRSGREGLLSPAPRSALGETAP 424
G + G+ P A G+T P
Sbjct: 1244 GRQGGKGAKGDPGAIGAPGKTGP 1266
Score = 38.1 bits (87), Expect = 0.020
Identities = 48/144 (33%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 286 PPLLGSSLGCPRTPTPGLTEG--GGTGLPSKQR----RGPSPKTELGGPQGSLGRASLSG 339
PP G P T T+G G G P K RG + L G G G G
Sbjct: 861 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEG 920
Query: 340 PFGP-GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCP 398
P GP GP G P R G IG P G P A E PG + + P
Sbjct: 921 PSGPPGPAGSPGERGAAGSGGPIGPPGRP-GPQGPPGAAGEKGVPGEKGPIGP------T 973
Query: 399 GTRGVRSGREGLLSPA-PRSALGE 421
G GV+ G GL PA P GE
Sbjct: 974 GRDGVQ-GPVGLPGPAGPPGVAGE 996
Score = 37.4 bits (85), Expect = 0.034
Identities = 35/112 (31%), Positives = 38/112 (33%), Gaps = 22/112 (19%)
Query: 318 GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPAR 377
GP L GP G G GP GP GPP P G A P A
Sbjct: 1067 GPIGLQGLPGPSGEKGETGDVGPMGPP---GPP---------------GPRGPAGPNGAD 1108
Query: 378 SELAPPGAQDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQ 427
PPG L P E+ PG G G G+ PR GE + Q
Sbjct: 1109 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGV--KGPRGERGEKGESGQ 1158
Score = 34.3 bits (77), Expect = 0.29
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTE-------LGGPQGSLGRASLSGPFGP-GP 345
G P +P P E G G K+ SP +E G G++G +GP GP GP
Sbjct: 1214 GQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGP 1272
Query: 346 QGGPPSRDRRHLGVQIGRVRAPLGSALPYP-----------------ARSELAPPGAQDA 388
G P R L +G+ P + P A+ E PG
Sbjct: 1273 AGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1332
Query: 389 LSPDPERPCPGTRGVRSGREGLLSPAPRSALG 420
+ P E+ G RG+ G +G SP + +G
Sbjct: 1333 IGPPGEQGEKGDRGL-PGPQG--SPGQKGEMG 1361
Score = 33.9 bits (76), Expect = 0.37
Identities = 51/198 (25%), Positives = 67/198 (33%), Gaps = 59/198 (29%)
Query: 275 IFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQR----RGPSPKTELGGPQG 330
I + R+ R PP +G P P L + G GL + +GP L GP G
Sbjct: 391 ILQQARLALRGPP---GPMGYTGRPGP-LGQPGSPGLKGESGDLGPQGPRGPQGLTGPPG 446
Query: 331 SLGRASLSG-------PFGPGPQG--------------------------GPPSRD-RRH 356
GR +G P PG +G GPP D R
Sbjct: 447 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERG 506
Query: 357 LGVQIG--------------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
+IG + P G P R P G + +L P E PG +G
Sbjct: 507 DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQG 566
Query: 403 VRSGREGLLSPAPRSALG 420
G +GL P P+ A+G
Sbjct: 567 T-PGTQGL--PGPQGAIG 581
Score = 33.1 bits (74), Expect = 0.64
Identities = 38/123 (30%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRA 366
G G+P GP + GPQG G G GP Q G P G Q +
Sbjct: 530 GPPGIP-----GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTP-------GTQ--GLPG 575
Query: 367 PLGSALPYPARSELAPPGAQDALSPD--PERP----CPGTRGVR--SGREGLLS-PAPRS 417
P G+ P+ + PG D P P PGT+G + SG +G L P PR
Sbjct: 576 PQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 635
Query: 418 ALG 420
G
Sbjct: 636 VKG 638
Score = 32.7 bits (73), Expect = 0.83
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----GPQGGPPSR---- 352
PG T G P+ + GP L G G GR +G GP GP G P R
Sbjct: 1261 PGKTGPVGPAGPAG-KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1319
Query: 353 ---DRRHLGVQIGRVRAPLGSA------LPYPARS-----ELAPPGAQDALSPDPERPCP 398
++ H G+ IG + P LP P S E+ PGA + P P
Sbjct: 1320 AKGEKGHPGL-IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP 1378
Query: 399 GTRGVRSGREGLLSP-APRSALGETAP 424
G G + G +G P P+ G P
Sbjct: 1379 GPAGPK-GAKGATGPGGPKGEKGVQGP 1404
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 25/112 (22%)
Query: 307 GGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ-I 361
G GLP RG + G G G L GP GP GPP GV+ +
Sbjct: 491 GAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPP-------GVRGM 543
Query: 362 GRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
+ P GS P + E PPG Q PGT+G+ G +G + P
Sbjct: 544 DGPQGPKGSLGP---QGEPGPPGQQGT---------PGTQGL-PGPQGAIGP 582
Score = 31.6 bits (70), Expect = 1.9
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 25/133 (18%)
Query: 288 LLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----- 342
LLG G P P P G K GP + G QG+ G L GP G
Sbjct: 525 LLGPK-GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 583
Query: 343 --PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD-PERPC-- 397
GPQG P G P GS P + PPG + P P+ P
Sbjct: 584 GEKGPQGKP------------GLPGMP-GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 630
Query: 398 PGTRGVRSGREGL 410
PG RGV+ G +G+
Sbjct: 631 PGPRGVK-GVDGI 642
Score = 30.8 bits (68), Expect = 3.2
Identities = 34/123 (27%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 319 PSPKTELGGP--QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPA 376
P P + G P +G G GP GP GPP + R GR A +P
Sbjct: 412 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-----GRAGADGARGMP--- 463
Query: 377 RSELAPPGAQDALSPDPERPCPGTRGVR--SGREGLLSP-------------APRSALGE 421
PG + D PG +G R +G +GL P PR GE
Sbjct: 464 ----GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGE 519
Query: 422 TAP 424
+ P
Sbjct: 520 SGP 522
Score = 30.4 bits (67), Expect = 4.1
Identities = 43/152 (28%), Positives = 55/152 (36%), Gaps = 26/152 (17%)
Query: 290 GSSLGCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP---- 343
G +G P P P G G G+P + +GP T G QG +G L GP GP
Sbjct: 940 GGPIGPPGRPGPQGPPGAAGEKGVPGE--KGPIGPTGRDGVQGPVG---LPGPAGPPGVA 994
Query: 344 ------GPQGGPPSRDRRHLGVQIG--RVRAPLGSALPYPARSELAPPGAQDALSPDPER 395
G G P + + + G P+G A PGA+ +
Sbjct: 995 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK 1054
Query: 396 PCPGTRGVRS-----GREGLLSPAPRSALGET 422
GTRG G +GL P P GET
Sbjct: 1055 GDEGTRGFNGPPGPIGLQGL--PGPSGEKGET 1084
Score = 29.6 bits (65), Expect = 7.1
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 293 LGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR 352
+G P P + GG GLP GP+ GP+G+ G GP G GPP
Sbjct: 1360 MGIPGASGP-IGPGGPPGLP-----GPA------GPKGAKGATGPGGPKGEKGVQGPPG- 1406
Query: 353 DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
H G G V PL +P R + P PG+ G
Sbjct: 1407 ---HPGPP-GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1452
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 43.9 bits (102), Expect = 4e-04
Identities = 56/186 (30%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 292 SLGCPRTPTPGLTEGGGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFG----- 342
SLG P P E G GL K RGP+ GP+G+ G++ G G
Sbjct: 705 SLGFPGFPGAS-GEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPH 763
Query: 343 --------PGPQG-----------GPPSRD--------RRHLGVQIGRV--RAPLGSALP 373
PGPQG GPP +D R +G Q G+ P G P
Sbjct: 764 GPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQ-GKTGPPGPPGVVGP 822
Query: 374 YPARSELAPPGAQDALSPDPERPCPGTRGV--RSGREGLL-SPAPRSALGETAPTAQFTF 430
A E P G + P P P PG +G+ +G+EG P P A G+ P F
Sbjct: 823 QGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 879
Query: 431 RKRRPL 436
R L
Sbjct: 880 PGERGL 885
Score = 39.3 bits (90), Expect = 0.009
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRRHLGVQIG 362
GG GL K GPS G G G A GP GP PQG P + + + + G
Sbjct: 890 GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 947
Query: 363 --------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
V+ P+G LP PA PPG E PG +G + + P
Sbjct: 948 PIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPG 1001
Query: 415 PRSALG 420
P +G
Sbjct: 1002 PPGPIG 1007
Score = 38.5 bits (88), Expect = 0.015
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 283 SRSPPLLGS-SLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 341
S SP + G + PR E G G P GP T GP+G+ G G
Sbjct: 1111 SGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP--GPKGPTGDDGPKGNPGPVGFPGDP 1168
Query: 342 GPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
GP +GGP +D G P P P E PPG P PG+
Sbjct: 1169 GPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GENGPPGPLGKRGP---AGSPGSE 1222
Query: 402 GVRSGREGLLSPAPRSALGETAP 424
G + G+ P A G+T P
Sbjct: 1223 GRQGGKGAKGDPGAIGAPGKTGP 1245
Score = 38.1 bits (87), Expect = 0.020
Identities = 48/144 (33%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 286 PPLLGSSLGCPRTPTPGLTEG--GGTGLPSKQR----RGPSPKTELGGPQGSLGRASLSG 339
PP G P T T+G G G P K RG + L G G G G
Sbjct: 840 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEG 899
Query: 340 PFGP-GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCP 398
P GP GP G P R G IG P G P A E PG + + P
Sbjct: 900 PSGPPGPAGSPGERGAAGSGGPIGPPGRP-GPQGPPGAAGEKGVPGEKGPIGP------T 952
Query: 399 GTRGVRSGREGLLSPA-PRSALGE 421
G GV+ G GL PA P GE
Sbjct: 953 GRDGVQ-GPVGLPGPAGPPGVAGE 975
Score = 37.4 bits (85), Expect = 0.034
Identities = 35/112 (31%), Positives = 38/112 (33%), Gaps = 22/112 (19%)
Query: 318 GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPAR 377
GP L GP G G GP GP GPP P G A P A
Sbjct: 1046 GPIGLQGLPGPSGEKGETGDVGPMGPP---GPP---------------GPRGPAGPNGAD 1087
Query: 378 SELAPPGAQDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQ 427
PPG L P E+ PG G G G+ PR GE + Q
Sbjct: 1088 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGV--KGPRGERGEKGESGQ 1137
Score = 34.3 bits (77), Expect = 0.29
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTE-------LGGPQGSLGRASLSGPFGP-GP 345
G P +P P E G G K+ SP +E G G++G +GP GP GP
Sbjct: 1193 GQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGP 1251
Query: 346 QGGPPSRDRRHLGVQIGRVRAPLGSALPYP-----------------ARSELAPPGAQDA 388
G P R L +G+ P + P A+ E PG
Sbjct: 1252 AGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1311
Query: 389 LSPDPERPCPGTRGVRSGREGLLSPAPRSALG 420
+ P E+ G RG+ G +G SP + +G
Sbjct: 1312 IGPPGEQGEKGDRGL-PGPQG--SPGQKGEMG 1340
Score = 33.9 bits (76), Expect = 0.37
Identities = 51/198 (25%), Positives = 67/198 (33%), Gaps = 59/198 (29%)
Query: 275 IFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQR----RGPSPKTELGGPQG 330
I + R+ R PP +G P P L + G GL + +GP L GP G
Sbjct: 370 ILQQARLALRGPP---GPMGYTGRPGP-LGQPGSPGLKGESGDLGPQGPRGPQGLTGPPG 425
Query: 331 SLGRASLSG-------PFGPGPQG--------------------------GPPSRD-RRH 356
GR +G P PG +G GPP D R
Sbjct: 426 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERG 485
Query: 357 LGVQIG--------------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
+IG + P G P R P G + +L P E PG +G
Sbjct: 486 DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQG 545
Query: 403 VRSGREGLLSPAPRSALG 420
G +GL P P+ A+G
Sbjct: 546 T-PGTQGL--PGPQGAIG 560
Score = 33.1 bits (74), Expect = 0.64
Identities = 38/123 (30%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRA 366
G G+P GP + GPQG G G GP Q G P G Q +
Sbjct: 509 GPPGIP-----GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTP-------GTQ--GLPG 554
Query: 367 PLGSALPYPARSELAPPGAQDALSPD--PERP----CPGTRGVR--SGREGLLS-PAPRS 417
P G+ P+ + PG D P P PGT+G + SG +G L P PR
Sbjct: 555 PQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 614
Query: 418 ALG 420
G
Sbjct: 615 VKG 617
Score = 32.7 bits (73), Expect = 0.83
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----GPQGGPPSR---- 352
PG T G P+ + GP L G G GR +G GP GP G P R
Sbjct: 1240 PGKTGPVGPAGPAG-KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1298
Query: 353 ---DRRHLGVQIGRVRAPLGSA------LPYPARS-----ELAPPGAQDALSPDPERPCP 398
++ H G+ IG + P LP P S E+ PGA + P P
Sbjct: 1299 AKGEKGHPGL-IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP 1357
Query: 399 GTRGVRSGREGLLSP-APRSALGETAP 424
G G + G +G P P+ G P
Sbjct: 1358 GPAGPK-GAKGATGPGGPKGEKGVQGP 1383
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 25/112 (22%)
Query: 307 GGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ-I 361
G GLP RG + G G G L GP GP GPP GV+ +
Sbjct: 470 GAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPP-------GVRGM 522
Query: 362 GRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
+ P GS P + E PPG Q PGT+G+ G +G + P
Sbjct: 523 DGPQGPKGSLGP---QGEPGPPGQQGT---------PGTQGL-PGPQGAIGP 561
Score = 31.6 bits (70), Expect = 1.9
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 25/133 (18%)
Query: 288 LLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----- 342
LLG G P P P G K GP + G QG+ G L GP G
Sbjct: 504 LLGPK-GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 562
Query: 343 --PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD-PERPC-- 397
GPQG P G P GS P + PPG + P P+ P
Sbjct: 563 GEKGPQGKP------------GLPGMP-GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 609
Query: 398 PGTRGVRSGREGL 410
PG RGV+ G +G+
Sbjct: 610 PGPRGVK-GVDGI 621
Score = 30.8 bits (68), Expect = 3.2
Identities = 34/123 (27%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 319 PSPKTELGGP--QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPA 376
P P + G P +G G GP GP GPP + R GR A +P
Sbjct: 391 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-----GRAGADGARGMP--- 442
Query: 377 RSELAPPGAQDALSPDPERPCPGTRGVR--SGREGLLSP-------------APRSALGE 421
PG + D PG +G R +G +GL P PR GE
Sbjct: 443 ----GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGE 498
Query: 422 TAP 424
+ P
Sbjct: 499 SGP 501
Score = 30.4 bits (67), Expect = 4.1
Identities = 43/152 (28%), Positives = 55/152 (36%), Gaps = 26/152 (17%)
Query: 290 GSSLGCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP---- 343
G +G P P P G G G+P + +GP T G QG +G L GP GP
Sbjct: 919 GGPIGPPGRPGPQGPPGAAGEKGVPGE--KGPIGPTGRDGVQGPVG---LPGPAGPPGVA 973
Query: 344 ------GPQGGPPSRDRRHLGVQIG--RVRAPLGSALPYPARSELAPPGAQDALSPDPER 395
G G P + + + G P+G A PGA+ +
Sbjct: 974 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK 1033
Query: 396 PCPGTRGVRS-----GREGLLSPAPRSALGET 422
GTRG G +GL P P GET
Sbjct: 1034 GDEGTRGFNGPPGPIGLQGL--PGPSGEKGET 1063
Score = 30.0 bits (66), Expect = 5.4
Identities = 36/109 (33%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 284 RSPPLLGSSLGCPRTPTP-GLTEGGGTGLPSKQRRGPSPKTELG----GPQGSLGRASLS 338
RSP S L P+ P G GL K +G E G GP G G A L
Sbjct: 246 RSPQQQPSRLHRPQNQEPQSQAAHGPRGL--KGEKGEPAVLEPGMLVEGPPGPEGPAGLI 303
Query: 339 GPFG----PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPP 383
GP G PGP G P R GR P P P + L P
Sbjct: 304 GPPGIQGNPGPVGDPGERG------PPGRAGLPGSDGAPGPPGTSLMLP 346
Score = 29.6 bits (65), Expect = 7.1
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 293 LGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR 352
+G P P + GG GLP GP+ GP+G+ G GP G GPP
Sbjct: 1339 MGIPGASGP-IGPGGPPGLP-----GPA------GPKGAKGATGPGGPKGEKGVQGPPG- 1385
Query: 353 DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
H G G V PL +P R + P PG+ G
Sbjct: 1386 ---HPGPP-GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1431
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 43.9 bits (102), Expect = 4e-04
Identities = 56/186 (30%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 292 SLGCPRTPTPGLTEGGGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFG----- 342
SLG P P E G GL K RGP+ GP+G+ G++ G G
Sbjct: 812 SLGFPGFPGAS-GEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPH 870
Query: 343 --------PGPQG-----------GPPSRD--------RRHLGVQIGRV--RAPLGSALP 373
PGPQG GPP +D R +G Q G+ P G P
Sbjct: 871 GPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQ-GKTGPPGPPGVVGP 929
Query: 374 YPARSELAPPGAQDALSPDPERPCPGTRGV--RSGREGLL-SPAPRSALGETAPTAQFTF 430
A E P G + P P P PG +G+ +G+EG P P A G+ P F
Sbjct: 930 QGAAGETGPMGERG--HPGPPGP-PGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 986
Query: 431 RKRRPL 436
R L
Sbjct: 987 PGERGL 992
Score = 39.3 bits (90), Expect = 0.009
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPG----PQGGPPSRDRRHLGVQIG 362
GG GL K GPS G G G A GP GP PQG P + + + + G
Sbjct: 997 GGPGL--KGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 1054
Query: 363 --------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSPA 414
V+ P+G LP PA PPG E PG +G + + P
Sbjct: 1055 PIGPTGRDGVQGPVG--LPGPA----GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPG 1108
Query: 415 PRSALG 420
P +G
Sbjct: 1109 PPGPIG 1114
Score = 38.5 bits (88), Expect = 0.015
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 283 SRSPPLLGS-SLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 341
S SP + G + PR E G G P GP T GP+G+ G G
Sbjct: 1218 SGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP--GPKGPTGDDGPKGNPGPVGFPGDP 1275
Query: 342 GPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTR 401
GP +GGP +D G P P P E PPG P PG+
Sbjct: 1276 GPPGEGGPRGQDGAK--GDRGEDGEPGQPGSPGPT-GENGPPGPLGKRGP---AGSPGSE 1329
Query: 402 GVRSGREGLLSPAPRSALGETAP 424
G + G+ P A G+T P
Sbjct: 1330 GRQGGKGAKGDPGAIGAPGKTGP 1352
Score = 38.1 bits (87), Expect = 0.020
Identities = 48/144 (33%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 286 PPLLGSSLGCPRTPTPGLTEG--GGTGLPSKQR----RGPSPKTELGGPQGSLGRASLSG 339
PP G P T T+G G G P K RG + L G G G G
Sbjct: 947 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEG 1006
Query: 340 PFGP-GPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCP 398
P GP GP G P R G IG P G P A E PG + + P
Sbjct: 1007 PSGPPGPAGSPGERGAAGSGGPIGPPGRP-GPQGPPGAAGEKGVPGEKGPIGP------T 1059
Query: 399 GTRGVRSGREGLLSPA-PRSALGE 421
G GV+ G GL PA P GE
Sbjct: 1060 GRDGVQ-GPVGLPGPAGPPGVAGE 1082
Score = 37.4 bits (85), Expect = 0.034
Identities = 35/112 (31%), Positives = 38/112 (33%), Gaps = 22/112 (19%)
Query: 318 GPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPAR 377
GP L GP G G GP GP GPP P G A P A
Sbjct: 1153 GPIGLQGLPGPSGEKGETGDVGPMGPP---GPP---------------GPRGPAGPNGAD 1194
Query: 378 SELAPPGAQDALSPDPERPCPGTRGVR--SGREGLLSPAPRSALGETAPTAQ 427
PPG L P E+ PG G G G+ PR GE + Q
Sbjct: 1195 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGV--KGPRGERGEKGESGQ 1244
Score = 34.3 bits (77), Expect = 0.29
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 294 GCPRTPTPGLTEGGGTGLPSKQRRGPSPKTE-------LGGPQGSLGRASLSGPFGP-GP 345
G P +P P E G G K+ SP +E G G++G +GP GP GP
Sbjct: 1300 GQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGP 1358
Query: 346 QGGPPSRDRRHLGVQIGRVRAPLGSALPYP-----------------ARSELAPPGAQDA 388
G P R L +G+ P + P A+ E PG
Sbjct: 1359 AGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1418
Query: 389 LSPDPERPCPGTRGVRSGREGLLSPAPRSALG 420
+ P E+ G RG+ G +G SP + +G
Sbjct: 1419 IGPPGEQGEKGDRGL-PGPQG--SPGQKGEMG 1447
Score = 33.9 bits (76), Expect = 0.37
Identities = 51/198 (25%), Positives = 67/198 (33%), Gaps = 59/198 (29%)
Query: 275 IFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQR----RGPSPKTELGGPQG 330
I + R+ R PP +G P P L + G GL + +GP L GP G
Sbjct: 477 ILQQARLALRGPP---GPMGYTGRPGP-LGQPGSPGLKGESGDLGPQGPRGPQGLTGPPG 532
Query: 331 SLGRASLSG-------PFGPGPQG--------------------------GPPSRD-RRH 356
GR +G P PG +G GPP D R
Sbjct: 533 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERG 592
Query: 357 LGVQIG--------------RVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
+IG + P G P R P G + +L P E PG +G
Sbjct: 593 DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQG 652
Query: 403 VRSGREGLLSPAPRSALG 420
G +GL P P+ A+G
Sbjct: 653 T-PGTQGL--PGPQGAIG 667
Score = 33.1 bits (74), Expect = 0.64
Identities = 38/123 (30%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 307 GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRA 366
G G+P GP + GPQG G G GP Q G P G Q +
Sbjct: 616 GPPGIP-----GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTP-------GTQ--GLPG 661
Query: 367 PLGSALPYPARSELAPPGAQDALSPD--PERP----CPGTRGVR--SGREGLLS-PAPRS 417
P G+ P+ + PG D P P PGT+G + SG +G L P PR
Sbjct: 662 PQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 721
Query: 418 ALG 420
G
Sbjct: 722 VKG 724
Score = 32.7 bits (73), Expect = 0.83
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 301 PGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP----GPQGGPPSR---- 352
PG T G P+ + GP L G G GR +G GP GP G P R
Sbjct: 1347 PGKTGPVGPAGPAG-KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAG 1405
Query: 353 ---DRRHLGVQIGRVRAPLGSA------LPYPARS-----ELAPPGAQDALSPDPERPCP 398
++ H G+ IG + P LP P S E+ PGA + P P
Sbjct: 1406 AKGEKGHPGL-IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP 1464
Query: 399 GTRGVRSGREGLLSP-APRSALGETAP 424
G G + G +G P P+ G P
Sbjct: 1465 GPAGPK-GAKGATGPGGPKGEKGVQGP 1490
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/112 (31%), Positives = 44/112 (39%), Gaps = 25/112 (22%)
Query: 307 GGTGLPSKQ----RRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQ-I 361
G GLP RG + G G G L GP GP GPP GV+ +
Sbjct: 577 GAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPP-------GVRGM 629
Query: 362 GRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRGVRSGREGLLSP 413
+ P GS P + E PPG Q PGT+G+ G +G + P
Sbjct: 630 DGPQGPKGSLGP---QGEPGPPGQQGT---------PGTQGL-PGPQGAIGP 668
Score = 31.6 bits (70), Expect = 1.9
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 25/133 (18%)
Query: 288 LLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFG----- 342
LLG G P P P G K GP + G QG+ G L GP G
Sbjct: 611 LLGPK-GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 669
Query: 343 --PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD-PERPC-- 397
GPQG P G P GS P + PPG + P P+ P
Sbjct: 670 GEKGPQGKP------------GLPGMP-GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 716
Query: 398 PGTRGVRSGREGL 410
PG RGV+ G +G+
Sbjct: 717 PGPRGVK-GVDGI 728
Score = 30.8 bits (68), Expect = 3.2
Identities = 34/123 (27%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 319 PSPKTELGGP--QGSLGRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPA 376
P P + G P +G G GP GP GPP + R GR A +P
Sbjct: 498 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-----GRAGADGARGMP--- 549
Query: 377 RSELAPPGAQDALSPDPERPCPGTRGVR--SGREGLLSP-------------APRSALGE 421
PG + D PG +G R +G +GL P PR GE
Sbjct: 550 ----GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGE 605
Query: 422 TAP 424
+ P
Sbjct: 606 SGP 608
Score = 30.4 bits (67), Expect = 4.1
Identities = 43/152 (28%), Positives = 55/152 (36%), Gaps = 26/152 (17%)
Query: 290 GSSLGCPRTPTPGLTEG--GGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGP---- 343
G +G P P P G G G+P + +GP T G QG +G L GP GP
Sbjct: 1026 GGPIGPPGRPGPQGPPGAAGEKGVPGE--KGPIGPTGRDGVQGPVG---LPGPAGPPGVA 1080
Query: 344 ------GPQGGPPSRDRRHLGVQIG--RVRAPLGSALPYPARSELAPPGAQDALSPDPER 395
G G P + + + G P+G A PGA+ +
Sbjct: 1081 GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK 1140
Query: 396 PCPGTRGVRS-----GREGLLSPAPRSALGET 422
GTRG G +GL P P GET
Sbjct: 1141 GDEGTRGFNGPPGPIGLQGL--PGPSGEKGET 1170
Score = 29.6 bits (65), Expect = 7.1
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 293 LGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGRASLSGPFGPGPQGGPPSR 352
+G P P + GG GLP GP+ GP+G+ G GP G GPP
Sbjct: 1446 MGIPGASGP-IGPGGPPGLP-----GPA------GPKGAKGATGPGGPKGEKGVQGPPG- 1492
Query: 353 DRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPDPERPCPGTRG 402
H G G V PL +P R + P PG+ G
Sbjct: 1493 ---HPGPP-GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPG 1538
Score = 29.3 bits (64), Expect = 9.2
Identities = 34/103 (33%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 289 LGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELG----GPQGSLGRASLSGPFG-- 342
LG +L T G G GL K +G E G GP G G A L GP G
Sbjct: 360 LGPALSA-ETAHSGAAAHGPRGL--KGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQ 416
Query: 343 --PGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPP 383
PGP G P R GR P P P + L P
Sbjct: 417 GNPGPVGDPGERG------PPGRAGLPGSDGAPGPPGTSLMLP 453
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 43.5 bits (101), Expect = 5e-04
Identities = 53/172 (30%), Positives = 63/172 (36%), Gaps = 24/172 (13%)
Query: 209 TGPTLPGGRES--SEAYPLPQLGAIGSGQAVAYGPFVLTQSSRPTDMLLNSLATSLSSRR 266
T P GGR + PLP+ + S + + P T SS L S R
Sbjct: 225 TPPEHAGGRRKKFTRTRPLPRTSSFLS-EVPSTRPLCATSSSHSAP-----LPFFWSPLR 278
Query: 267 MPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELG 326
PS P R+ SPP R T G + GG +G SK R P+P
Sbjct: 279 NPSPRPAPACGELRLGRLSPP---------RADTGGSSSGGCSGPDSKHRTLPAPPAPTA 329
Query: 327 GPQGSLGRASLSGPF----GPGPQGGPPS-RDRRHLGVQIGRVRAPLGSALP 373
P + G P GPGP GPPS RD V R GS LP
Sbjct: 330 WP--AAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELP 379
Score = 30.0 bits (66), Expect = 5.4
Identities = 43/145 (29%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 280 RIRSR-----SPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 334
RIR R S P L S R P G L + RGP+ + G +G
Sbjct: 21 RIRPRLAEALSQPTLRHSASALRPPRLSR----GKDLKPRCGRGPAHSPDPG--EGCEAW 74
Query: 335 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSA-LPYPARSELAPPGAQDALSPDP 393
LS P P P R L G+ P A LP P PP + LS P
Sbjct: 75 RRLSADRWPRPASLSP---RAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAP 131
Query: 394 ERP---CPGTRGVRSGREGLLSPAP 415
RP C +G+R L++P+P
Sbjct: 132 GRPLGACARAKGIR-----LVNPSP 151
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 43.5 bits (101), Expect = 5e-04
Identities = 53/172 (30%), Positives = 63/172 (36%), Gaps = 24/172 (13%)
Query: 209 TGPTLPGGRES--SEAYPLPQLGAIGSGQAVAYGPFVLTQSSRPTDMLLNSLATSLSSRR 266
T P GGR + PLP+ + S + + P T SS L S R
Sbjct: 225 TPPEHAGGRRKKFTRTRPLPRTSSFLS-EVPSTRPLCATSSSHSAP-----LPFFWSPLR 278
Query: 267 MPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELG 326
PS P R+ SPP R T G + GG +G SK R P+P
Sbjct: 279 NPSPRPAPACGELRLGRLSPP---------RADTGGSSSGGCSGPDSKHRTLPAPPAPTA 329
Query: 327 GPQGSLGRASLSGPF----GPGPQGGPPS-RDRRHLGVQIGRVRAPLGSALP 373
P + G P GPGP GPPS RD V R GS LP
Sbjct: 330 WP--AAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELP 379
Score = 30.0 bits (66), Expect = 5.4
Identities = 43/145 (29%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 280 RIRSR-----SPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 334
RIR R S P L S R P G L + RGP+ + G +G
Sbjct: 21 RIRPRLAEALSQPTLRHSASALRPPRLSR----GKDLKPRCGRGPAHSPDPG--EGCEAW 74
Query: 335 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSA-LPYPARSELAPPGAQDALSPDP 393
LS P P P R L G+ P A LP P PP + LS P
Sbjct: 75 RRLSADRWPRPASLSP---RAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAP 131
Query: 394 ERP---CPGTRGVRSGREGLLSPAP 415
RP C +G+R L++P+P
Sbjct: 132 GRPLGACARAKGIR-----LVNPSP 151
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 43.5 bits (101), Expect = 5e-04
Identities = 53/172 (30%), Positives = 63/172 (36%), Gaps = 24/172 (13%)
Query: 209 TGPTLPGGRES--SEAYPLPQLGAIGSGQAVAYGPFVLTQSSRPTDMLLNSLATSLSSRR 266
T P GGR + PLP+ + S + + P T SS L S R
Sbjct: 225 TPPEHAGGRRKKFTRTRPLPRTSSFLS-EVPSTRPLCATSSSHSAP-----LPFFWSPLR 278
Query: 267 MPSSCPMTIFMRCRIRSRSPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELG 326
PS P R+ SPP R T G + GG +G SK R P+P
Sbjct: 279 NPSPRPAPACGELRLGRLSPP---------RADTGGSSSGGCSGPDSKHRTLPAPPAPTA 329
Query: 327 GPQGSLGRASLSGPF----GPGPQGGPPS-RDRRHLGVQIGRVRAPLGSALP 373
P + G P GPGP GPPS RD V R GS LP
Sbjct: 330 WP--AAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELP 379
Score = 30.0 bits (66), Expect = 5.4
Identities = 43/145 (29%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 280 RIRSR-----SPPLLGSSLGCPRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGPQGSLGR 334
RIR R S P L S R P G L + RGP+ + G +G
Sbjct: 21 RIRPRLAEALSQPTLRHSASALRPPRLSR----GKDLKPRCGRGPAHSPDPG--EGCEAW 74
Query: 335 ASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSA-LPYPARSELAPPGAQDALSPDP 393
LS P P P R L G+ P A LP P PP + LS P
Sbjct: 75 RRLSADRWPRPASLSP---RAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAP 131
Query: 394 ERP---CPGTRGVRSGREGLLSPAP 415
RP C +G+R L++P+P
Sbjct: 132 GRPLGACARAKGIR-----LVNPSP 151
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 43.1 bits (100), Expect = 6e-04
Identities = 64/214 (29%), Positives = 81/214 (37%), Gaps = 37/214 (17%)
Query: 221 EAYPLPQLGAIGSGQAVAYGPFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCR 280
E PL G GSG+ GP S + S R PSSC R
Sbjct: 615 EGGPLGGAGGGGSGEGQGRGP--------------GSRVSVRRSSRAPSSC--------R 652
Query: 281 IRSRSPPLLGS--SLGCPRTPTPGL----TEGGGTG--LPSKQRRGPSPKTELGGPQGSL 332
S +PP S S G P +P P L T+G + R+G GGP+
Sbjct: 653 AASLAPPRPASATSAGSPTSPAPPLHMVSTDGCSAAFLVLDSARKGDRRSARRGGPRSWR 712
Query: 333 GRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD 392
A S P+G P + R G + + G + P PARS P + L+
Sbjct: 713 PSARASWVRSTTPRG-PEASSPRARGSFLPKSG---GGSPPRPARSLAGPSRDDEPLAGA 768
Query: 393 PER-PCPGTRGVRSGREGL-LSPAP-RSALGETA 423
PE P PG R+ R + SPAP R AL A
Sbjct: 769 PEEWPPPGLSSRRAPRFLIKSSPAPGRRALAARA 802
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 43.1 bits (100), Expect = 6e-04
Identities = 64/214 (29%), Positives = 81/214 (37%), Gaps = 37/214 (17%)
Query: 221 EAYPLPQLGAIGSGQAVAYGPFVLTQSSRPTDMLLNSLATSLSSRRMPSSCPMTIFMRCR 280
E PL G GSG+ GP S + S R PSSC R
Sbjct: 615 EGGPLGGAGGGGSGEGQGRGP--------------GSRVSVRRSSRAPSSC--------R 652
Query: 281 IRSRSPPLLGS--SLGCPRTPTPGL----TEGGGTG--LPSKQRRGPSPKTELGGPQGSL 332
S +PP S S G P +P P L T+G + R+G GGP+
Sbjct: 653 AASLAPPRPASATSAGSPTSPAPPLHMVSTDGCSAAFLVLDSARKGDRRSARRGGPRSWR 712
Query: 333 GRASLSGPFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAPPGAQDALSPD 392
A S P+G P + R G + + G + P PARS P + L+
Sbjct: 713 PSARASWVRSTTPRG-PEASSPRARGSFLPKSG---GGSPPRPARSLAGPSRDDEPLAGA 768
Query: 393 PER-PCPGTRGVRSGREGL-LSPAP-RSALGETA 423
PE P PG R+ R + SPAP R AL A
Sbjct: 769 PEEWPPPGLSSRRAPRFLIKSSPAPGRRALAARA 802
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,148,225
Number of Sequences: 37866
Number of extensions: 1677561
Number of successful extensions: 10538
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 563
Number of HSP's that attempted gapping in prelim test: 6861
Number of HSP's gapped (non-prelim): 2480
length of query: 525
length of database: 18,247,518
effective HSP length: 107
effective length of query: 418
effective length of database: 14,195,856
effective search space: 5933867808
effective search space used: 5933867808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.