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Search of human proteins with 239756155
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756155 PREDICTED: hypothetical protein [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756155 PREDICTED: hypothetical protein [Homo sapiens] 369 e-103
gi|134142824 forkhead box D2 [Homo sapiens] 33 0.14
gi|150417973 supervillin isoform 2 [Homo sapiens] 33 0.18
gi|150417971 supervillin isoform 1 [Homo sapiens] 33 0.18
gi|9506745 urotensin 2 receptor [Homo sapiens] 31 0.53
gi|32698864 hypothetical protein LOC149466 [Homo sapiens] 31 0.53
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 30 0.90
gi|169166892 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|169166322 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 30 1.5
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 30 1.5
gi|4504859 intermediate conductance calcium-activated potassium ... 29 2.0
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ... 29 2.0
gi|169208826 PREDICTED: hypothetical protein [Homo sapiens] 29 2.6
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 29 2.6
gi|89257348 homeo box HB9 [Homo sapiens] 29 2.6
gi|31982931 SLC2A4 regulator [Homo sapiens] 29 2.6
gi|8922149 downstream neighbor of SON [Homo sapiens] 28 3.4
gi|20336188 paired basic amino acid cleaving system 4 isoform e ... 28 4.5
gi|20336186 paired basic amino acid cleaving system 4 isoform c ... 28 4.5
gi|27894285 paired basic amino acid cleaving system 4 isoform f ... 28 4.5
gi|20336190 paired basic amino acid cleaving system 4 isoform d ... 28 4.5
gi|20336184 paired basic amino acid cleaving system 4 isoform h ... 28 4.5
gi|20336182 paired basic amino acid cleaving system 4 isoform g ... 28 4.5
gi|4505577 paired basic amino acid cleaving system 4 isoform a p... 28 4.5
gi|20336180 paired basic amino acid cleaving system 4 isoform b ... 28 4.5
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 28 5.8
gi|25952144 tumor necrosis factor ligand superfamily, member 14 ... 28 5.8
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 28 5.8
>gi|239756155 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 369 bits (947), Expect = e-103
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MQRELDPGALNAAPRAFINKRAVYVIVSFVSQGKVPAILSSLPLEMPGCLRALAAVREGP 60
MQRELDPGALNAAPRAFINKRAVYVIVSFVSQGKVPAILSSLPLEMPGCLRALAAVREGP
Sbjct: 1 MQRELDPGALNAAPRAFINKRAVYVIVSFVSQGKVPAILSSLPLEMPGCLRALAAVREGP 60
Query: 61 RPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCVALHMRTAA 120
RPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCVALHMRTAA
Sbjct: 61 RPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCVALHMRTAA 120
Query: 121 LHLVKHPAAGWGLLRTGLAHPGAPSAGARGAPAFTFTPTLHSRGRPARVIFRKLPHDVTA 180
LHLVKHPAAGWGLLRTGLAHPGAPSAGARGAPAFTFTPTLHSRGRPARVIFRKLPHDVTA
Sbjct: 121 LHLVKHPAAGWGLLRTGLAHPGAPSAGARGAPAFTFTPTLHSRGRPARVIFRKLPHDVTA 180
Query: 181 LETR 184
LETR
Sbjct: 181 LETR 184
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 33.1 bits (74), Expect = 0.14
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 48 GCLRALAAVREGPRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLL 107
GC +A A P A LP TALL QGL GGG+ G QR S
Sbjct: 361 GCAKAFYAASLSPPAAGTAAGLP-------TALLRQGLKTDAGGGAGGGGAGAGQRPSF- 412
Query: 108 LLLCVALHMRTAALHLVKHPAAGWGLLRTGLAHPGAPSAGARG 150
+ H++ H G G PG P A A G
Sbjct: 413 -----------SIDHIMGHGGGGAAPPGAGEGSPGPPFAAAAG 444
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 32.7 bits (73), Expect = 0.18
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 6 DPGALNAAPRAFI--NKRAVYVIVSFVSQGKVPAILSSLP 43
DPG+ N APR FI + + FV + P+++SS+P
Sbjct: 1993 DPGSFNFAPRLFILSSSSGDFAATEFVYPARAPSVVSSMP 2032
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 32.7 bits (73), Expect = 0.18
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 6 DPGALNAAPRAFI--NKRAVYVIVSFVSQGKVPAILSSLP 43
DPG+ N APR FI + + FV + P+++SS+P
Sbjct: 1567 DPGSFNFAPRLFILSSSSGDFAATEFVYPARAPSVVSSMP 1606
>gi|9506745 urotensin 2 receptor [Homo sapiens]
Length = 389
Score = 31.2 bits (69), Expect = 0.53
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 37 AILSSLPLEMPGCLRALAAVREGPRPRTGPAWLPRS-----ALVARTALLPQGLLVG 88
A+L +LP+ + A+ VR GP+ PAW PR+ L+ T++ GLL+G
Sbjct: 177 ALLLTLPVML-----AMRLVRRGPKSLCLPAWGPRAHRAYLTLLFATSIAGPGLLIG 228
>gi|32698864 hypothetical protein LOC149466 [Homo sapiens]
Length = 113
Score = 31.2 bits (69), Expect = 0.53
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 7 PGALNAAPRAFINKRAVYVIVSFVSQGKVPAILSSLPLEMPGCLRALAAVREGPRPRTGP 66
P A AP RA V+V FV V ++L +L + C R A+ R P P TG
Sbjct: 15 PTASAVAPGPGTGARAWPVLVGFVLGAVVLSLLIALAAKCHLCRRYHASYRHRPLPETGR 74
Query: 67 AWLPRSA 73
P+ A
Sbjct: 75 GGRPQVA 81
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 50 LRALAAVREGPRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSG 95
+R L +R+ PR T P P + + + P L GGGGG++G
Sbjct: 115 VRLLDGIRQRPRAGTSPGGSPPARPIPGQSAAP--TLAGGGGGAAG 158
>gi|169166892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 1.2
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 27/106 (25%)
Query: 43 PLEMPGCLRALAAVREGPRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQ 102
PLE+PG LRALA R GP S+L A + + SG+ + P+
Sbjct: 111 PLELPGELRALAPSH--CRSLRGPQRRSNSSLSVVGARMRE---------CSGVGVFWPK 159
Query: 103 RCSLLLLLCVALHMRTAALHLVKHPAAGWGLLRTGLAHPGAPSAGA 148
C+ + R P++G LL + L+H G PS+GA
Sbjct: 160 --------CLRIRKRK--------PSSGCTLLVSTLSHKGEPSSGA 189
>gi|169166322 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 1.2
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 27/106 (25%)
Query: 43 PLEMPGCLRALAAVREGPRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQ 102
PLE+PG LRALA R GP S+L A + + SG+ + P+
Sbjct: 111 PLELPGELRALAPSH--CRSLRGPQRRSNSSLSVVGARMRE---------CSGVGVFWPK 159
Query: 103 RCSLLLLLCVALHMRTAALHLVKHPAAGWGLLRTGLAHPGAPSAGA 148
C+ + R P++G LL + L+H G PS+GA
Sbjct: 160 --------CLRIRKRK--------PSSGCTLLVSTLSHKGEPSSGA 189
>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 29.6 bits (65), Expect = 1.5
Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 36/132 (27%)
Query: 7 PGALNAAPRAFINKRAVYVIVSFVSQG-----------KVPAILSSLPLEMPGCLRALAA 55
PG P+ F R V+ + +QG + P + PL +P L A A
Sbjct: 82 PGQSRPRPQTF--PRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPAPKA 139
Query: 56 VREGPRPRTGPAWLPRSALVARTALLPQGLLVGGG------GGS---------------S 94
G P +GP LP A R+A+ G GG GG S
Sbjct: 140 --RGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRSQTPGETAFPAVHS 197
Query: 95 GLFLLQPQRCSL 106
GL +P RCS+
Sbjct: 198 GLCQKEPHRCSI 209
>gi|51173735 ras responsive element binding protein 1 isoform 2 [Homo
sapiens]
Length = 1687
Score = 29.6 bits (65), Expect = 1.5
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 52 ALAAVREGP-RPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLL 110
A AA E P +P GP L + + +AL+ LVG SG LL+P R LLL
Sbjct: 996 APAATPEPPAQPLQGPVQL--AVPIYSSALVSSPPLVGSSALLSGTALLRPLRPKPPLLL 1053
Query: 111 -----CVALHMRTAALHLVKHPAAGWGLLRTGLAHPGAPSAGA 148
L + ++ ++ LL+T +A PG S G+
Sbjct: 1054 PKPPVTEELPPLASIAQIISSVSSAPTLLKTKVADPGPASTGS 1096
>gi|51173737 ras responsive element binding protein 1 isoform 1 [Homo
sapiens]
Length = 1742
Score = 29.6 bits (65), Expect = 1.5
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 52 ALAAVREGP-RPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLL 110
A AA E P +P GP L + + +AL+ LVG SG LL+P R LLL
Sbjct: 996 APAATPEPPAQPLQGPVQL--AVPIYSSALVSSPPLVGSSALLSGTALLRPLRPKPPLLL 1053
Query: 111 -----CVALHMRTAALHLVKHPAAGWGLLRTGLAHPGAPSAGA 148
L + ++ ++ LL+T +A PG S G+
Sbjct: 1054 PKPPVTEELPPLASIAQIISSVSSAPTLLKTKVADPGPASTGS 1096
>gi|4504859 intermediate conductance calcium-activated potassium
channel protein 1 [Homo sapiens]
Length = 427
Score = 29.3 bits (64), Expect = 2.0
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 16 AFINKRAVYVIVSFVSQGKVPAILSSLPLEMPGCLRALAAVREGPRPRTG---------- 65
A ++A +++ V G PA P+ P C++ L A P+P G
Sbjct: 99 ALTGRQAAQIVLELVVCGLHPA-----PVRGPPCVQDLGAPLTSPQPWPGFLGQGEALLS 153
Query: 66 PAWLPRSALVARTALLPQGLLVGGGGGSSG 95
A L R LV R LL G+L+ S G
Sbjct: 154 LAMLLRLYLVPRAVLLRSGVLLNASYRSIG 183
>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
sapiens]
Length = 977
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 119 AALHLVKHPAAGWG----------LLRTGLAHPGAPSAGARGAPAFTFTPTLHSRGRPA 167
A L +++H W TG+A PG P ARG +TP +G PA
Sbjct: 867 AKLQVLEHVGGPWSCQQAEMYRFSFFSTGVAPPGPPHRRARGKARAPWTPEYVEQGIPA 925
>gi|169208826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 28.9 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 130 GWGLLRTGLAHPGAPSAGARGAPAFTFTPTLHSRGRPAR 168
G +LR + PG + GA P F P R RPAR
Sbjct: 76 GRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPAR 114
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 28.9 bits (63), Expect = 2.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 125 KHPAAGWGLLRTGLAHPGAPSAGARGAPAFTFTPTLHSRGRPARVIFRKLPH 176
+ PA G R L P +P R AP T H GRP R R+ PH
Sbjct: 180 RRPAPGARRSRPRLLRPASPPP--RPAPRRRSTAPRHEGGRPGRGRTRRQPH 229
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 28.9 bits (63), Expect = 2.6
Identities = 31/86 (36%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 70 PRSALVARTALLPQGLLV--GGGGGSSGLFLLQPQRCSLLLLLCVALHMRTAALHLVKHP 127
P L A ALLP+ + GGGGG +G P + H AA
Sbjct: 80 PPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHA---------HPGAAAAAAAAAA 130
Query: 128 AAGWGLLRTGLAHPGAPSAGARGAPA 153
AA G L GL HPG GA G PA
Sbjct: 131 AAAAGGLALGL-HPGGAQGGA-GLPA 154
>gi|31982931 SLC2A4 regulator [Homo sapiens]
Length = 387
Score = 28.9 bits (63), Expect = 2.6
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 47 PGCLRALAAV--REGPRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQ 102
P LRA A EGP PR P +P PQG V GGG +GL +PQ
Sbjct: 13 PSALRAEAPWLRAEGPGPRAAPVTVPTP---------PQGSSV--GGGFAGLEFARPQ 59
>gi|8922149 downstream neighbor of SON [Homo sapiens]
Length = 566
Score = 28.5 bits (62), Expect = 3.4
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 51 RALAAVREGPRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSG 95
R+ A PR T PA R+ALVA L P G GGGS G
Sbjct: 27 RSRGAAASPPRELTEPA-ARRAALVAGLPLRPFPAAGGRGGGSGG 70
>gi|20336188 paired basic amino acid cleaving system 4 isoform e
preproprotein [Homo sapiens]
Length = 623
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|20336186 paired basic amino acid cleaving system 4 isoform c
preproprotein [Homo sapiens]
Length = 487
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|27894285 paired basic amino acid cleaving system 4 isoform f
preproprotein [Homo sapiens]
Length = 664
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|20336190 paired basic amino acid cleaving system 4 isoform d
preproprotein [Homo sapiens]
Length = 652
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|20336184 paired basic amino acid cleaving system 4 isoform h
preproprotein [Homo sapiens]
Length = 962
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|20336182 paired basic amino acid cleaving system 4 isoform g
preproprotein [Homo sapiens]
Length = 975
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|4505577 paired basic amino acid cleaving system 4 isoform a
preproprotein [Homo sapiens]
Length = 969
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|20336180 paired basic amino acid cleaving system 4 isoform b
preproprotein [Homo sapiens]
Length = 956
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 62 PRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCV 112
P GP PR+A TA G GG G G L P+ LLLL +
Sbjct: 7 PAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLAL 57
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 27.7 bits (60), Expect = 5.8
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 119 AALHLVKHPAAGWGLLRTGLAHPGAPSAGARGAPAFTFTPT 159
AA + ++H A G +R+ LA PG P+ G+ +P+ +PT
Sbjct: 265 AAKNRLQHQAIGPSGMRS-LAEPGCPTHGSAESPSTAASPT 304
>gi|25952144 tumor necrosis factor ligand superfamily, member 14
isoform 1 precursor [Homo sapiens]
Length = 240
Score = 27.7 bits (60), Expect = 5.8
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 60 PRPRTGPAWLPRSALVARTALLPQGLLVGGGGGSSGLFLLQPQRCSLLLLLCVALHMRTA 119
P R G + +S VAR L LL+G G G FLLQ LH R
Sbjct: 20 PFTRLGRSHRRQSCSVARVGLGLLLLLMGAGLAVQGWFLLQ-------------LHWRLG 66
Query: 120 AL--HLVKHPAAGW-GLLRTGLAHPGAPSAGARGA 151
+ L PA W L++ +H P+A GA
Sbjct: 67 EMVTRLPDGPAGSWEQLIQERRSHEVNPAAHLTGA 101
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 27 VSFVSQGKVPAILSSLP---LEMPGCLRALAAVREGPRPRTGPAWLPRSALVARTALLP 82
+S GK P + SL L MPG A AA E P T P P+ +T P
Sbjct: 132 MSMTGAGKSPPSVQSLAMRLLSMPGAQGAAAAGSEPPPATTSPEGQPKVHRARKTMSKP 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,295,629
Number of Sequences: 37866
Number of extensions: 423706
Number of successful extensions: 1987
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1957
Number of HSP's gapped (non-prelim): 60
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.