Guide to the Human Genome
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Name: LOC100287986 Sequence: fasta or formatted (977aa) NCBI GI: 239746185
Description:

PREDICTED: hypothetical protein XP_002343659

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         75           3
 C cysteine            2.6         25           2
 D aspartate           3.6         35           2
 E glutamate           4.8         47           2
 F phenylalanine       2.1         21           2
 G glycine             8.6         84           5
 H histidine           3.2         31           1
 I isoleucine          3.0         29           2
 K lysine              3.0         29           1
 L leucine             8.3         81           3
 M methionine          1.0         10           1
 N asparagine          2.1         21           1
 P proline            10.0         98           3
 Q glutamine           7.6         74           3
 R arginine            8.3         81           3
 S serine              8.8         86           3
 T threonine           5.8         57           2
 V valine              5.6         55           2
 W tryptophan          2.1         21           1
 Y tyrosine            1.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343659 
LOC100292280          0.717   PREDICTED: hypothetical protein 
LOC100290478          0.716   PREDICTED: hypothetical protein XP_002347965 
LOC100291803          0.008   PREDICTED: hypothetical protein XP_002345194 
LOC100286923          0.008   PREDICTED: hypothetical protein 
LOC100286923          0.008   PREDICTED: hypothetical protein XP_002343672 
ZFHX4                 0.007   zinc finger homeodomain 4 
PLCH2                 0.007   phospholipase C, eta 2 
RNF43                 0.007   ring finger protein 43 
ZNF384                0.006   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.006   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.006   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.006   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.006   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.006   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.006   nuclear matrix transcription factor 4 isoform d [Ho...
TENC1                 0.006   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.006   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.006   tensin like C1 domain containing phosphatase isoform...
RP1L1                 0.006   retinitis pigmentosa 1-like 1 
KIAA0284              0.006   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.006   hypothetical protein LOC283638 isoform 1 
EP300                 0.005   E1A binding protein p300 
PANK1                 0.005   pantothenate kinase 1 isoform alpha 
NEU4                  0.005   sialidase 4 
KLF5                  0.005   Kruppel-like factor 5 
SEC16A                0.005   SEC16 homolog A 
OLIG1                 0.005   oligodendrocyte transcription factor 1 
ZNF444                0.005   zinc finger protein 444 
FAM100A               0.005   hypothetical protein LOC124402 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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