Guide to the Human Genome
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Name: LOC100293413 Sequence: fasta or formatted (184aa) NCBI GI: 239756155
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         26           2
 C cysteine            1.6          3           1
 D aspartate           1.1          2           1
 E glutamate           2.2          4           1
 F phenylalanine       3.3          6           1
 G glycine            10.3         19           5
 H histidine           3.3          6           1
 I isoleucine          2.2          4           1
 K lysine              2.2          4           1
 L leucine            16.3         30           5
 M methionine          1.6          3           1
 N asparagine          1.1          2           1
 P proline             9.8         18           1
 Q glutamine           2.7          5           1
 R arginine            9.8         18           1
 S serine              5.4         10           2
 T threonine           4.9          9           1
 V valine              6.5         12           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FOXD2                 0.023   forkhead box D2 
SVIL                  0.023   supervillin isoform 2 
SVIL                  0.023   supervillin isoform 1 
UTS2R                 0.017   urotensin 2 receptor 
C1orf210              0.017   hypothetical protein LOC149466 
SH3RF3                0.015   SH3 domain containing ring finger 3 
LOC100129986          0.015   PREDICTED: hypothetical protein 
LOC100129986          0.015   PREDICTED: hypothetical protein 
LOC100292909          0.015   PREDICTED: hypothetical protein 
RREB1                 0.015   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.015   ras responsive element binding protein 1 isoform 1 [...
KCNN4                 0.012   intermediate conductance calcium-activated potassium ...
LOC100287986          0.012   PREDICTED: hypothetical protein XP_002343659 
LOC100134360          0.012   PREDICTED: hypothetical protein 
LOC100293818          0.012   PREDICTED: hypothetical protein 
MNX1                  0.012   homeo box HB9 
SLC2A4RG              0.012   SLC2A4 regulator 
DONSON                0.009   downstream neighbor of SON 
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform e ...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform c ...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform f ...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform d ...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.009   paired basic amino acid cleaving system 4 isoform b ...
SIX3                  0.009   sine oculis homeobox homolog 3 
TNFSF14               0.009   tumor necrosis factor ligand superfamily, member 14 ...
EHMT2                 0.009   euchromatic histone-lysine N-methyltransferase 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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