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Search of human proteins with 239756041
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo
sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo ... 355 1e-98
gi|224177556 lanosterol synthase isoform 2 [Homo sapiens] 31 0.46
gi|47933395 lanosterol synthase isoform 1 [Homo sapiens] 31 0.46
gi|47933397 lanosterol synthase isoform 1 [Homo sapiens] 31 0.46
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 30 0.79
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 30 1.3
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] 30 1.3
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ... 29 2.3
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 28 3.0
gi|239757476 PREDICTED: hypothetical protein [Homo sapiens] 28 5.1
gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo ... 28 5.1
gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo ... 28 5.1
gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo ... 28 5.1
gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo ... 28 5.1
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 28 5.1
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 28 5.1
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 28 5.1
gi|19924099 synapsin I isoform Ia [Homo sapiens] 28 5.1
gi|19924097 synapsin I isoform Ib [Homo sapiens] 28 5.1
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 28 5.1
gi|44917619 kelch domain containing 10 [Homo sapiens] 28 5.1
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 28 5.1
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 27 6.7
gi|212286156 zinc finger and BTB domain containing 42 [Homo sapi... 27 6.7
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 27 6.7
gi|115511057 hypothetical protein LOC256643 [Homo sapiens] 27 6.7
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 27 8.7
gi|239754967 PREDICTED: hypothetical protein [Homo sapiens] 27 8.7
>gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo
sapiens]
Length = 172
Score = 355 bits (910), Expect = 1e-98
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MGWAHLGAPGLSNLGPPCPSPLSVLPGVVAQPVRPLGVVAVMVRELGPLRREGGPAVHEA 60
MGWAHLGAPGLSNLGPPCPSPLSVLPGVVAQPVRPLGVVAVMVRELGPLRREGGPAVHEA
Sbjct: 1 MGWAHLGAPGLSNLGPPCPSPLSVLPGVVAQPVRPLGVVAVMVRELGPLRREGGPAVHEA 60
Query: 61 LHRGGRWRLLCARGPVLQQLYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAPRAGQ 120
LHRGGRWRLLCARGPVLQQLYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAPRAGQ
Sbjct: 61 LHRGGRWRLLCARGPVLQQLYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAPRAGQ 120
Query: 121 VQQPRDVVLPRDHQRVGLQRAAARPKGCGAVGAVPQDPVVGLTPLQGAVHED 172
VQQPRDVVLPRDHQRVGLQRAAARPKGCGAVGAVPQDPVVGLTPLQGAVHED
Sbjct: 121 VQQPRDVVLPRDHQRVGLQRAAARPKGCGAVGAVPQDPVVGLTPLQGAVHED 172
>gi|224177556 lanosterol synthase isoform 2 [Homo sapiens]
Length = 721
Score = 31.2 bits (69), Expect = 0.46
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 49 LRREGGPAVHEALHRGGRWRLLCARG 74
LRR GGP E GRWRL C RG
Sbjct: 7 LRRRGGPYKTEPATDLGRWRLNCERG 32
>gi|47933395 lanosterol synthase isoform 1 [Homo sapiens]
Length = 732
Score = 31.2 bits (69), Expect = 0.46
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 49 LRREGGPAVHEALHRGGRWRLLCARG 74
LRR GGP E GRWRL C RG
Sbjct: 7 LRRRGGPYKTEPATDLGRWRLNCERG 32
>gi|47933397 lanosterol synthase isoform 1 [Homo sapiens]
Length = 732
Score = 31.2 bits (69), Expect = 0.46
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 49 LRREGGPAVHEALHRGGRWRLLCARG 74
LRR GGP E GRWRL C RG
Sbjct: 7 LRRRGGPYKTEPATDLGRWRLNCERG 32
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 30.4 bits (67), Expect = 0.79
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 24 VLPGVVAQPVRPLGVVAVMVRELGPLRREGG 54
V+P VVAQP L +A + +GPLRR GG
Sbjct: 497 VVPQVVAQPGGALEGLAALGTFVGPLRRSGG 527
>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 8 APGLSNLGPPCPSPLSVL----PGVVAQPVRPLGVVAVMVRELGPLRREGGPAVHEALHR 63
AP ++ GPP S + P QP +P V M RE P R + P
Sbjct: 14 APNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRRE-PPARAQPAPPAGRGQRG 72
Query: 64 GGRWRLLCARG 74
GG WR RG
Sbjct: 73 GGSWRAGRGRG 83
>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 8 APGLSNLGPPCPSPLSVL----PGVVAQPVRPLGVVAVMVRELGPLRREGGPAVHEALHR 63
AP ++ GPP S + P QP +P V M RE P R + P
Sbjct: 14 APNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRRE-PPARAQPAPPAGRGQRG 72
Query: 64 GGRWRLLCARG 74
GG WR RG
Sbjct: 73 GGSWRAGRGRG 83
>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 28.9 bits (63), Expect = 2.3
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 6 LGAPGLSNLGPPCPSPLSVLPGVVAQPVRPLGVV---AVMVRELGPLRR--EGGPAVHEA 60
L PG ++ G C +PG A P G A + R P R E G A+H+
Sbjct: 62 LRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERG-ALHQ- 119
Query: 61 LHRGGRWRLLCARGPVLQQLYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAP--RA 118
HR R+ +LQ R L +GR V+Q+ +H L + H AP A
Sbjct: 120 -HRVDL-RVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPA 177
Query: 119 GQVQQ--PRDVVLPRDHQRV----GLQRAAARPKGCGAVGA--VPQDP 158
G+ ++ PR + +R G AARP G ++GA PQ P
Sbjct: 178 GRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPP 225
>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 28.9 bits (63), Expect = 2.3
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 6 LGAPGLSNLGPPCPSPLSVLPGVVAQPVRPLGVV---AVMVRELGPLRR--EGGPAVHEA 60
L PG ++ G C +PG A P G A + R P R E G A+H+
Sbjct: 62 LRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERG-ALHQ- 119
Query: 61 LHRGGRWRLLCARGPVLQQLYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAP--RA 118
HR R+ +LQ R L +GR V+Q+ +H L + H AP A
Sbjct: 120 -HRVDL-RVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPA 177
Query: 119 GQVQQ--PRDVVLPRDHQRV----GLQRAAARPKGCGAVGA--VPQDP 158
G+ ++ PR + +R G AARP G ++GA PQ P
Sbjct: 178 GRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPP 225
>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
Length = 229
Score = 28.9 bits (63), Expect = 2.3
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 6 LGAPGLSNLGPPCPSPLSVLPGVVAQPVRPLGVV---AVMVRELGPLRR--EGGPAVHEA 60
L PG ++ G C +PG A P G A + R P R E G A+H+
Sbjct: 62 LRPPGSAHPGVICSCRAPPIPGTSATPEDLAGPAFREAWLWRPCPPRPRTFERG-ALHQ- 119
Query: 61 LHRGGRWRLLCARGPVLQQLYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAP--RA 118
HR R+ +LQ R L +GR V+Q+ +H L + H AP A
Sbjct: 120 -HRVDL-RVRKELAHLLQGALLLQRRLQRGRRLAAVLQQQRHQLAQVLLQHRHVAPPRPA 177
Query: 119 GQVQQ--PRDVVLPRDHQRV----GLQRAAARPKGCGAVGA--VPQDP 158
G+ ++ PR + +R G AARP G ++GA PQ P
Sbjct: 178 GRSRRSHPRSLAALASRRRACAGGGPGDVAARPSGTCSLGAGRGPQPP 225
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 28.5 bits (62), Expect = 3.0
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 2 GWAHLGAPGLSNLGPPCP--SPLSVLPGVVAQPVRPLGVVAVMVR-ELGPLRREGGPAVH 58
G H +P L PPCP PL++ P A P L +++ ++ E GP + GP +
Sbjct: 517 GAVHHHSPAPRRLRPPCPPFGPLALGP---AGPSAALRLLSQQLQGESGPDQDSAGPVLG 573
Query: 59 EALHRGGRWRLLCARGPV 76
++L WR G V
Sbjct: 574 QSL----AWRWAARSGVV 587
>gi|239757476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 27.7 bits (60), Expect = 5.1
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 19 PSPLSVLPGVVAQPVRPLGVVAVM----VRELGPLRREGGPAVH---EALHRGGRW-RLL 70
P+PL+VLP AQ + P VAV+ LG ++ G + EA R G+W R
Sbjct: 14 PAPLAVLPAFSAQ-LGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKWNRAA 72
Query: 71 CARGPVL--QQLYPQHR 85
A GP Q+L+ Q R
Sbjct: 73 AALGPSSPGQRLWVQPR 89
>gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo
sapiens]
Length = 104
Score = 27.7 bits (60), Expect = 5.1
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 19 PSPLSVLPGVVAQPVRPLGVVAVM----VRELGPLRREGGPAVH---EALHRGGRW-RLL 70
P+PL+VLP AQ + P VAV+ LG ++ G + EA R G+W R
Sbjct: 14 PAPLAVLPAFSAQ-LGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKWNRAA 72
Query: 71 CARGPVL--QQLYPQHR 85
A GP Q+L+ Q R
Sbjct: 73 AALGPSSPGQRLWVQPR 89
>gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo
sapiens]
Length = 212
Score = 27.7 bits (60), Expect = 5.1
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 46 LGPLRREGGPAVHEALHRGGRWRLLCARGPVLQQLYPQHRA------LVQGRATLEVIQK 99
LGPL GPAV L R G LC PV + P+ A LV RA
Sbjct: 24 LGPLSVSHGPAVAPNLPRTGFASPLCTHTPVHETTDPRKEAAQHEVFLVPARAATPAPPS 83
Query: 100 AQHP 103
A P
Sbjct: 84 APAP 87
>gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo
sapiens]
Length = 104
Score = 27.7 bits (60), Expect = 5.1
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 19 PSPLSVLPGVVAQPVRPLGVVAVM----VRELGPLRREGGPAVH---EALHRGGRW-RLL 70
P+PL+VLP AQ + P VAV+ LG ++ G + EA R G+W R
Sbjct: 14 PAPLAVLPAFSAQ-LGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKWNRAA 72
Query: 71 CARGPVL--QQLYPQHR 85
A GP Q+L+ Q R
Sbjct: 73 AALGPSSPGQRLWVQPR 89
>gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo
sapiens]
Length = 212
Score = 27.7 bits (60), Expect = 5.1
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 46 LGPLRREGGPAVHEALHRGGRWRLLCARGPVLQQLYPQHRA------LVQGRATLEVIQK 99
LGPL GPAV L R G LC PV + P+ A LV RA
Sbjct: 24 LGPLSVSHGPAVAPNLPRTGFASPLCTHTPVHETTDPRKEAAQHEVFLVPARAATPAPPS 83
Query: 100 AQHP 103
A P
Sbjct: 84 APAP 87
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 27.7 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 5 HLGAPGLSNLGPPCPSPLSVLPGVVAQPVR 34
H P L +GP CP+P V P P R
Sbjct: 632 HPRVPPLQPMGPTCPTPAPVPPPEAPSPFR 661
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 27.7 bits (60), Expect = 5.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 8 APGLSNLGPPCPSPLSVLPGVVAQPVRP 35
AP L +GPP P P LPG P P
Sbjct: 554 APPLPGVGPPPPPPAPPLPGGAPLPPPP 581
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 27.7 bits (60), Expect = 5.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 8 APGLSNLGPPCPSPLSVLPGVVAQPVRP 35
AP L +GPP P P LPG P P
Sbjct: 554 APPLPGVGPPPPPPAPPLPGGAPLPPPP 581
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 7 GAPGLSNLGPPCPSPL-SVLPGVVAQPVRPLGVVAVMVRELGPLRR--EGGPAVHEA 60
G LS LGPP SPL LP + P +P A + G R GGP A
Sbjct: 489 GQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA 545
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 7 GAPGLSNLGPPCPSPL-SVLPGVVAQPVRPLGVVAVMVRELGPLRR--EGGPAVHEA 60
G LS LGPP SPL LP + P +P A + G R GGP A
Sbjct: 489 GQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA 545
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 27.7 bits (60), Expect = 5.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 8 APGLSNLGPPCPSPLSVLPGVVAQPVRPL 36
APGL L P P P + PGV+ QP PL
Sbjct: 988 APGL--LPPQSPYPYAPQPGVLGQPPPPL 1014
>gi|44917619 kelch domain containing 10 [Homo sapiens]
Length = 442
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 48 PLRREGGPAVHEALHRGGRWRLLCARGPVLQQLYPQHRALVQG 90
P G VH + RW LL RG ++Y Q A++ G
Sbjct: 175 PFGESNGNDVHVCNVKYKRWALLSCRGKKPSRIYGQAMAIING 217
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 27.7 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 16 PPCPSPLSVLPGVVAQPVRPLG--VVAVMVRELGPLRREGGP 55
PP PSPL+ LP ++ P + V V + P R+ G P
Sbjct: 2969 PPHPSPLTPLPPLLVCPTATVANTVTTVTISTSPPKRKRGRP 3010
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 27.3 bits (59), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 6 LGAPGLSNLGPPCPSPLSVLPGVVAQPVRP 35
+G PG+ GPP P + LPG + P P
Sbjct: 684 VGQPGIGFPGPPGPKGVDGLPGDMGPPGTP 713
>gi|212286156 zinc finger and BTB domain containing 42 [Homo
sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 6.7
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 8 APGLSNLGPPCPSPL---SVLPGVVAQPVRPLGVVAVMVRELGPLRREGGPAVHEALHRG 64
APG PPCP P+ + P + P GV A + P R G P
Sbjct: 131 APGAEPAQPPCPWPVWTADLCPAARKAKLPPFGVKAAL-----PPRASGPPPCQVPEESD 185
Query: 65 GRWRLLCARGPVLQQLYP 82
L GP ++++P
Sbjct: 186 QALDLSLKSGPRQERVHP 203
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 27.3 bits (59), Expect = 6.7
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 17 PCPSPLSVLPGVVAQP-VRPLGVVAV--------MVRELGPLRREGGPAVHEALHRGGRW 67
P PS S PG AQ VR L VA ++ E P EG + L G
Sbjct: 1044 PWPSDSSY-PGPAAQGCVRDLSTVADRGALSENGVIGEASPCGSEG-----KGLGSSGSE 1097
Query: 68 RLLCARGPVLQQLYP 82
+LLC RG LQ+ P
Sbjct: 1098 KLLCPRGRTLQETMP 1112
>gi|115511057 hypothetical protein LOC256643 [Homo sapiens]
Length = 682
Score = 27.3 bits (59), Expect = 6.7
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 80 LYPQHRALVQGRATLEVIQKAQHPLVYRVDLALHEAPRAGQVQQPRDVVLPRDHQRVGLQ 139
+Y HR GR ++AQ+ Y + E R Q+ + P DH
Sbjct: 92 MYKPHRGYSPGRGDSN--RRAQYMPKYSEGIPYKEHERNSYPQKVQGGHSPDDH------ 143
Query: 140 RAAARPKGCGAVGAVPQDPVVGLTPLQGAVHED 172
R +G G G PQ + +G HED
Sbjct: 144 ----RVRGSGKGGKPPQRSIADSFRFEGKWHED 172
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 26.9 bits (58), Expect = 8.7
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 18 CPSPLSVLPGVVAQPVRPLGVVAVMVREL---GPLRREGGPAVHEALHR--GGRWRLLCA 72
CP + P +P RPL +A M R L P+ + PA E L G RLLCA
Sbjct: 53 CPECRELSPQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCPAHREPLAAFCGDELRLLCA 112
>gi|239754967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 48 PLRREGGPA---VHEALHRGGRWRLLCARGPVL 77
P R GGP VH LH G W LC GP L
Sbjct: 78 PQERIGGPVHPQVHAHLHGDGGWPRLC--GPTL 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,366,062
Number of Sequences: 37866
Number of extensions: 441872
Number of successful extensions: 1345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 51
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.