Guide to the Human Genome
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Name: LOC100291881 Sequence: fasta or formatted (172aa) NCBI GI: 239756041
Description:

PREDICTED: hypothetical protein XP_002344790

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         19           3
 C cysteine            1.7          3           1
 D aspartate           2.9          5           1
 E glutamate           3.5          6           1
 F phenylalanine       0.0          0           0
 G glycine            11.6         20           2
 H histidine           4.7          8           1
 I isoleucine          0.6          1           1
 K lysine              1.2          2           1
 L leucine            12.8         22           2
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline            11.6         20           2
 Q glutamine           8.1         14           2
 R arginine            9.9         17           2
 S serine              1.7          3           1
 T threonine           1.2          2           1
 V valine             13.4         23           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344790 
LSS                   0.018   lanosterol synthase isoform 2 
LSS                   0.018   lanosterol synthase isoform 1 
LSS                   0.018   lanosterol synthase isoform 1 
LOC100289978          0.015   PREDICTED: hypothetical protein XP_002348035 
LOC100130883          0.015   PREDICTED: similar to proline rich 20 
LOC100130883          0.015   PREDICTED: similar to proline rich 20 
LOC100293445          0.012   PREDICTED: hypothetical protein 
LOC100288225          0.012   PREDICTED: hypothetical protein 
LOC100288225          0.012   PREDICTED: hypothetical protein XP_002343333 
LOC100287933          0.009   PREDICTED: hypothetical protein XP_002343257 
LOC100293462          0.009   PREDICTED: hypothetical protein 
LOC100289932          0.009   PREDICTED: hypothetical protein XP_002348093 
LOC100291356          0.009   PREDICTED: hypothetical protein XP_002347017 
LOC100288737          0.009   PREDICTED: hypothetical protein XP_002343770 
LOC100286907          0.009   PREDICTED: hypothetical protein XP_002342878 
PELP1                 0.009   proline, glutamic acid and leucine rich protein 1 [...
DIAPH2                0.009   diaphanous 2 isoform 12C 
DIAPH2                0.009   diaphanous 2 isoform 156 
SYN1                  0.009   synapsin I isoform Ia 
SYN1                  0.009   synapsin I isoform Ib 
PTPN23                0.009   protein tyrosine phosphatase, non-receptor type 23 [...
KLHDC10               0.009   kelch domain containing 10 
SRCAP                 0.009   Snf2-related CBP activator protein 
COL4A1                0.006   alpha 1 type IV collagen preproprotein 
ZBTB42                0.006   zinc finger and BTB domain containing 42 
CECR2                 0.006   cat eye syndrome chromosome region, candidate 2 [Ho...
CXorf23               0.006   hypothetical protein LOC256643 
TRIM11                0.006   tripartite motif-containing 11 
LOC100292662          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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