Guide to the Human Genome
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Name: LOC100292662 Sequence: fasta or formatted (160aa) NCBI GI: 239754967
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.0         24           2
 C cysteine            3.1          5           1
 D aspartate           1.9          3           2
 E glutamate           4.4          7           1
 F phenylalanine       0.6          1           1
 G glycine            10.0         16           2
 H histidine          10.0         16           1
 I isoleucine          4.4          7           2
 K lysine              1.2          2           1
 L leucine             8.1         13           3
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline             7.5         12           1
 Q glutamine          11.2         18           2
 R arginine            5.0          8           1
 S serine              4.4          7           2
 T threonine           1.9          3           1
 V valine              7.5         12           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294409          1.000   PREDICTED: hypothetical protein 
LPA                   0.029   lipoprotein Lp(a) precursor 
C11orf35              0.022   hypothetical protein LOC256329 
ATXN1                 0.019   ataxin 1 
ATXN1                 0.019   ataxin 1 
ITGA10                0.019   integrin, alpha 10 precursor 
LOC100291393          0.016   PREDICTED: hypothetical protein XP_002347924 
LOC100291061          0.010   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.010   PREDICTED: hypothetical protein XP_002343855 
FAM148B               0.010   nuclear localized factor 2 
FAM148A               0.010   nuclear localized factor 1 
LOC100289737          0.010   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.010   PREDICTED: hypothetical protein XP_002343039 
LAMA3                 0.010   laminin alpha 3 subunit isoform 1 
LAMA3                 0.010   laminin alpha 3 subunit isoform 3 
AXIN1                 0.010   axin 1 isoform a 
AXIN1                 0.010   axin 1 isoform b 
HIPK3                 0.010   homeodomain interacting protein kinase 3 isoform 2 ...
HIPK3                 0.010   homeodomain interacting protein kinase 3 isoform 1 ...
PLG                   0.006   plasminogen 
LOC100131251          0.006   PREDICTED: hypothetical protein 
LOC100131251          0.006   PREDICTED: hypothetical protein 
FUBP1                 0.006   far upstream element-binding protein 
ZC3H4                 0.006   zinc finger CCCH-type containing 4 
EP300                 0.006   E1A binding protein p300 
FGFR4                 0.006   fibroblast growth factor receptor 4 isoform 2 precur...
FGFR4                 0.006   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.006   fibroblast growth factor receptor 4 isoform 1 precur...
LOC100291881          0.006   PREDICTED: hypothetical protein XP_002344790 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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