Guide to the Human Genome
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Name: LSS Sequence: fasta or formatted (721aa) NCBI GI: 224177556
Description:

lanosterol synthase isoform 2

Referenced in:

Cholesterol Biosynthesis

Other entries for this name:
alt prot [652aa] lanosterol synthase isoform 3
alt prot [732aa] lanosterol synthase isoform 1
alt prot [732aa] lanosterol synthase isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         60           2
 C cysteine            2.9         21           1
 D aspartate           5.0         36           2
 E glutamate           6.5         47           2
 F phenylalanine       4.0         29           1
 G glycine             7.9         57           2
 H histidine           3.5         25           3
 I isoleucine          3.7         27           1
 K lysine              3.1         22           2
 L leucine            10.5         76           3
 M methionine          2.4         17           2
 N asparagine          2.9         21           2
 P proline             5.0         36           2
 Q glutamine           4.4         32           2
 R arginine            7.1         51           3
 S serine              5.0         36           2
 T threonine           5.1         37           1
 V valine              5.0         36           2
 W tryptophan          3.1         22           1
 Y tyrosine            4.6         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lanosterol synthase isoform 2 
LSS                   0.994   lanosterol synthase isoform 1 
LSS                   0.994   lanosterol synthase isoform 1 
LSS                   0.881   lanosterol synthase isoform 3 
CRY1                  0.005   cryptochrome 1 (photolyase-like) 
RABGGTB               0.005   RAB geranylgeranyltransferase, beta subunit 
LOC100134138          0.005   PREDICTED: similar to mucin, partial 
OPTN                  0.005   optineurin 
OPTN                  0.005   optineurin 
OPTN                  0.005   optineurin 
OPTN                  0.005   optineurin 
LOC100291881          0.004   PREDICTED: hypothetical protein XP_002344790 
FCHSD1                0.003   FCH and double SH3 domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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