Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293462 Sequence: fasta or formatted (104aa) NCBI GI: 239757476
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         17           4
 C cysteine            1.9          2           1
 D aspartate           1.9          2           1
 E glutamate           3.8          4           1
 F phenylalanine       2.9          3           1
 G glycine             8.7          9           2
 H histidine           0.0          0           0
 I isoleucine          1.0          1           1
 K lysine              2.9          3           1
 L leucine            10.6         11           1
 M methionine          1.9          2           1
 N asparagine          2.9          3           1
 P proline            10.6         11           1
 Q glutamine           5.8          6           1
 R arginine            7.7          8           1
 S serine              6.7          7           2
 T threonine           5.8          6           2
 V valine              4.8          5           1
 W tryptophan          2.9          3           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289932          1.000   PREDICTED: hypothetical protein XP_002348093 
LOC100288737          1.000   PREDICTED: hypothetical protein XP_002343770 
LOC100291878          0.026   PREDICTED: similar to RIKEN cDNA C230030N03 
GRID1                 0.016   glutamate receptor, ionotropic, delta 1 precursor [H...
DTX1                  0.016   deltex homolog 1 
LOC100293526          0.016   PREDICTED: hypothetical protein 
LOC100291881          0.016   PREDICTED: hypothetical protein XP_002344790 
LOC100291411          0.016   PREDICTED: hypothetical protein XP_002348184 
LOC100288664          0.016   PREDICTED: hypothetical protein XP_002343845 
LOC100292934          0.011   PREDICTED: hypothetical protein 
LOC100290359          0.011   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.011   PREDICTED: hypothetical protein XP_002342114 
FOXQ1                 0.005   forkhead box Q1 
UHRF1                 0.005   ubiquitin-like with PHD and ring finger domains 1 i...
UHRF1                 0.005   ubiquitin-like with PHD and ring finger domains 1 i...
MAGEC3                0.005   melanoma antigen family C, 3 isoform 1 
DSCAML1               0.005   Down syndrome cell adhesion molecule like 1 
ZDHHC5                0.005   zinc finger, DHHC domain containing 5 
CPSF6                 0.005   cleavage and polyadenylation specific factor 6, 68 ...
LRP8                  0.005   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.005   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.005   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.005   low density lipoprotein receptor-related protein 8 i...
MPN2                  0.005   marapsin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press