Guide to the Human Genome
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Name: ZBTB42 Sequence: fasta or formatted (422aa) NCBI GI: 212286156
Description:

zinc finger and BTB domain containing 42

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         31           3
 C cysteine            4.7         20           1
 D aspartate           4.7         20           1
 E glutamate           5.7         24           2
 F phenylalanine       3.3         14           1
 G glycine             7.3         31           2
 H histidine           4.0         17           1
 I isoleucine          0.7          3           1
 K lysine              4.3         18           1
 L leucine            11.8         50           2
 M methionine          0.7          3           1
 N asparagine          0.7          3           1
 P proline            10.9         46           3
 Q glutamine           4.0         17           2
 R arginine            8.8         37           2
 S serine              8.1         34           4
 T threonine           3.6         15           1
 V valine              6.4         27           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and BTB domain containing 42 
ZNF238                0.248   zinc finger protein 238 isoform 2 
ZNF238                0.248   zinc finger protein 238 isoform 1 
ZBTB3                 0.216   zinc finger and BTB domain containing 3 
ZBTB17                0.158   zinc finger and BTB domain containing 17 
BCL6B                 0.142   B-cell CLL/lymphoma 6, member B (zinc finger protein...
ZBTB7B                0.125   zinc finger and BTB domain containing 7B 
LOC100293130          0.125   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.125   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.125   PREDICTED: similar to kruppel-related zinc finger p...
ZBTB48                0.117   zinc finger and BTB domain containing 48 
ZNF236                0.096   zinc finger protein 236 
ZNF263                0.089   zinc finger protein 263 
ZNF358                0.088   zinc finger protein 358 
ZNF607                0.087   zinc finger protein 607 
ZNF629                0.087   zinc finger protein 629 
ZNF135                0.087   zinc finger protein 135 
ZBTB5                 0.087   zinc finger and BTB domain containing 5 
ZNF768                0.087   zinc finger protein 768 
ZNF497                0.087   zinc finger protein 497 
ZNF672                0.087   zinc finger protein 672 
ZNF670                0.086   zinc finger protein 670 
ZNF846                0.086   zinc finger protein 846 
ZNF596                0.086   zinc finger protein 596 
ZNF596                0.086   zinc finger protein 596 
ZNF596                0.086   zinc finger protein 596 
ZNF829                0.086   zinc finger protein 829 
ZNF787                0.086   zinc finger protein 787 
ZNF700                0.086   zinc finger protein 700 
ZSCAN5C               0.086   PREDICTED: zinc finger and SCAN domain containing 5...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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