Guide to the Human Genome
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Name: LOC100293445 Sequence: fasta or formatted (229aa) NCBI GI: 239756183
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         32           2
 C cysteine            3.5          8           1
 D aspartate           1.3          3           1
 E glutamate           3.1          7           1
 F phenylalanine       0.9          2           1
 G glycine            11.8         27           3
 H histidine           3.9          9           1
 I isoleucine          0.9          2           1
 K lysine              1.3          3           1
 L leucine            11.4         26           3
 M methionine          0.4          1           1
 N asparagine          0.4          1           1
 P proline            10.9         25           2
 Q glutamine           6.6         15           3
 R arginine           14.8         34           3
 S serine              6.6         15           1
 T threonine           2.6          6           1
 V valine              4.8         11           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288225          1.000   PREDICTED: hypothetical protein 
LOC100288225          1.000   PREDICTED: hypothetical protein XP_002343333 
SYVN1                 0.036   synoviolin 1 isoform b 
SYVN1                 0.036   synoviolin 1 isoform a 
LOC100293375          0.031   PREDICTED: hypothetical protein 
LOC283104             0.031   PREDICTED: hypothetical protein 
LOC283104             0.031   PREDICTED: hypothetical protein 
LOC283104             0.031   PREDICTED: hypothetical protein 
LOC285141             0.029   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.029   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.029   PREDICTED: hypothetical protein LOC285141 
LOC100129036          0.027   PREDICTED: hypothetical protein 
GALR3                 0.027   galanin receptor 3 
LOC100290359          0.027   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.027   PREDICTED: hypothetical protein XP_002342114 
RLTPR                 0.025   RGD motif, leucine rich repeats, tropomodulin domain...
LOC728804             0.025   PREDICTED: hypothetical protein 
LOC728804             0.025   PREDICTED: hypothetical protein 
LOC100289837          0.022   PREDICTED: hypothetical protein XP_002347487 
ZFP92                 0.022   zinc finger protein 92 homolog 
LOC100293777          0.022   PREDICTED: hypothetical protein 
ANKRD33B              0.022   PREDICTED: ankyrin repeat domain 33B 
LOC100287697          0.020   PREDICTED: hypothetical protein XP_002343295 
NTN5                  0.020   netrin 5 
TP53I13               0.020   tumor protein p53 inducible protein 13 
LOC100292934          0.020   PREDICTED: hypothetical protein 
VPS37D                0.020   vacuolar protein sorting 37D 
TCTEX1D4              0.020   Tctex1 domain containing 4 
LOC100291593          0.018   PREDICTED: similar to hCG2012845 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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