LSS 30924

Name: LSS	Sequence: fasta or formatted (732aa)		NCBI GI: 47933397
Description: lanosterol synthase isoform 1		Referenced in: Cholesterol Biosynthesis
Other entries for this name: alt prot [721aa] lanosterol synthase isoform 2 alt prot [652aa] lanosterol synthase isoform 3 alt mRNA [732aa] lanosterol synthase isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.2 60 2 C cysteine 2.9 21 1 D aspartate 5.1 37 2 E glutamate 6.4 47 2 F phenylalanine 4.0 29 1 G glycine 8.2 60 2 H histidine 3.4 25 3 I isoleucine 3.7 27 1 K lysine 3.0 22 2 L leucine 10.7 78 3 M methionine 2.3 17 2 N asparagine 2.9 21 2 P proline 5.1 37 2 Q glutamine 4.5 33 2 R arginine 7.0 51 3 S serine 5.1 37 2 T threonine 5.1 37 1 V valine 5.1 37 2 W tryptophan 3.1 23 1 Y tyrosine 4.5 33 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lanosterol synthase isoform 1 LSS 1.000 lanosterol synthase isoform 1 LSS 0.978 lanosterol synthase isoform 2 LSS 0.888 lanosterol synthase isoform 3 CRY1 0.005 cryptochrome 1 (photolyase-like) RABGGTB 0.005 RAB geranylgeranyltransferase, beta subunit LOC100134138 0.005 PREDICTED: similar to mucin, partial OPTN 0.005 optineurin OPTN 0.005 optineurin OPTN 0.005 optineurin OPTN 0.005 optineurin LOC100291881 0.004 PREDICTED: hypothetical protein XP_002344790 FCHSD1 0.003 FCH and double SH3 domains 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.