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Search of human proteins with 239755930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755930 PREDICTED: hypothetical protein XP_002344747 [Homo
sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755930 PREDICTED: hypothetical protein XP_002344747 [Homo ... 138 8e-34
gi|239750450 PREDICTED: hypothetical protein [Homo sapiens] 138 8e-34
gi|239744752 PREDICTED: hypothetical protein XP_002343247 [Homo ... 138 8e-34
gi|115511036 alpha-kinase 3 [Homo sapiens] 30 0.32
gi|23110964 cathepsin W preproprotein [Homo sapiens] 30 0.41
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 0.54
gi|62526024 cutA divalent cation tolerance homolog isoform 2 [Ho... 29 0.92
gi|7706244 cutA divalent cation tolerance homolog isoform 2 [Hom... 29 0.92
gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Ho... 29 0.92
gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Ho... 29 0.92
gi|62526022 cutA divalent cation tolerance homolog isoform 2 [Ho... 29 0.92
gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens] 29 0.92
gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens] 29 0.92
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens] 28 1.2
gi|19924099 synapsin I isoform Ia [Homo sapiens] 28 1.2
gi|19924097 synapsin I isoform Ib [Homo sapiens] 28 1.2
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 28 1.6
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 28 1.6
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|22749211 transmembrane and tetratricopeptide repeat containin... 28 1.6
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 28 2.1
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 28 2.1
gi|239756425 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239750939 PREDICTED: hypothetical protein XP_002347609 [Homo ... 28 2.1
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 28 2.1
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 28 2.1
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 27 2.7
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 27 3.5
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
>gi|239755930 PREDICTED: hypothetical protein XP_002344747 [Homo
sapiens]
Length = 64
Score = 138 bits (348), Expect = 8e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR
Sbjct: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
Query: 61 RAGH 64
RAGH
Sbjct: 61 RAGH 64
>gi|239750450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 138 bits (348), Expect = 8e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR
Sbjct: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
Query: 61 RAGH 64
RAGH
Sbjct: 61 RAGH 64
>gi|239744752 PREDICTED: hypothetical protein XP_002343247 [Homo
sapiens]
Length = 64
Score = 138 bits (348), Expect = 8e-34
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR
Sbjct: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
Query: 61 RAGH 64
RAGH
Sbjct: 61 RAGH 64
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 2 GRSAAGEGPWLYTMSSEV--LPQPPSPTITIF---------SSFLPGPGAAVWARA-PGA 49
G ++ +GP L+ + LP+PP P T S GPGA WA A PG
Sbjct: 76 GPGSSTKGPVLHDQDTRCAFLPRPPGPLQTRRYCRHQGRQGSGLGAGPGAGTWAPAPPGV 135
Query: 50 SIARSPQHWRRRAG 63
S R P R G
Sbjct: 136 SKPRCPGRARPGEG 149
>gi|23110964 cathepsin W preproprotein [Homo sapiens]
Length = 376
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 2 GRSAAGEGPWLYTMSSEVLPQPPSPT 27
G + EG W T+SS+ PQPP PT
Sbjct: 299 GSVKSEEGIWAETVSSQSQPQPPHPT 324
>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 166
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
Query: 20 LPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQH 57
LPQPP P + S ARA GA AR+PQH
Sbjct: 121 LPQPPPPQPNLLS-----------ARASGAGRARAPQH 147
>gi|62526024 cutA divalent cation tolerance homolog isoform 2
[Homo sapiens]
Length = 156
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 18 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 59
>gi|7706244 cutA divalent cation tolerance homolog isoform 2 [Homo
sapiens]
Length = 156
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 18 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 59
>gi|62526026 cutA divalent cation tolerance homolog isoform 3
[Homo sapiens]
Length = 179
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 41 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 82
>gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Homo
sapiens]
Length = 198
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 60 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 101
>gi|62526022 cutA divalent cation tolerance homolog isoform 2
[Homo sapiens]
Length = 156
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 12 LYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIAR 53
L TM+S P PSP S ++PG +A + P +A+
Sbjct: 18 LLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAK 59
>gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]
Length = 993
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 8 EGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSP 55
EGPW P+ SP + I + PGP AV PG + +P
Sbjct: 137 EGPWS--------PESESPMLRITAPLPPGPSMAVPTLGPGEIASTTP 176
>gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]
Length = 994
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 8 EGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSP 55
EGPW P+ SP + I + PGP AV PG + +P
Sbjct: 137 EGPWS--------PESESPMLRITAPLPPGPSMAVPTLGPGEIASTTP 176
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 4 SAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSP 55
+A GP L S P PPSP + S LP P R+P S+ R+P
Sbjct: 110 AAPSPGP-LPARPSSPPPSPPSPPVPTAQSSLPAPWPPQGPRSPAPSL-RAP 159
>gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]
Length = 1180
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSPQ 56
SP +F S PGAAV+ R+PGA++ RSP+
Sbjct: 357 SPGAAVFRS----PGAAVF-RSPGAAVYRSPE 383
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 509 SPGAAVFHS----PGAAVY-RSPGAAVFRSP 534
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 525 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 550
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 541 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 566
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 557 SPGAAVFRS----PGAAVY-RSPGAAVYRSP 582
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 621 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 646
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 637 SPGAAVFRS----PGAAVY-RSPGAAVYRSP 662
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 669 SPGAAVFRS----PGAAVY-RSPGAAVYRSP 694
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 890 SPGAAVFHS----PGAAVY-RSPGAAVYRSP 915
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 946 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 971
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 962 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 987
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 978 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 1003
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 994 SPGAAVFRS----PGAAVY-RSPGAAVFRSP 1019
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP +F S PGAAV+ R+PGA++ RSP
Sbjct: 938 SPGAAVFRS----PGAAVF-RSPGAAVYRSP 963
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 573 SPGAAVYRS----PGAAVY-RSPGAAVYRSP 598
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 581 SPGAAVYRS----PGAAVY-RSPGAAVYRSP 606
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 589 SPGAAVYRS----PGAAVY-RSPGAAVYRSP 614
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 597 SPGAAVYRS----PGAAVY-RSPGAAVYRSP 622
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 605 SPGAAVYRS----PGAAVY-RSPGAAVFRSP 630
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 653 SPGAAVYRS----PGAAVY-RSPGAAVFRSP 678
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 906 SPGAAVYRS----PGAAVY-RSPGAAVYRSP 931
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 914 SPGAAVYRS----PGAAVY-RSPGAAVYRSP 939
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 922 SPGAAVYRS----PGAAVY-RSPGAAVFRSP 947
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 613 SPGAAVYRS----PGAAVF-RSPGAAVYRSP 638
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 661 SPGAAVYRS----PGAAVF-RSPGAAVYRSP 686
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 25 SPTITIFSSFLPGPGAAVWARAPGASIARSP 55
SP ++ S PGAAV+ R+PGA++ RSP
Sbjct: 930 SPGAAVYRS----PGAAVF-RSPGAAVFRSP 955
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 21 PQPPSPTITIFS-SFLPGPGAAVWARAPGASIARSP 55
PQPP P S PGPG A R+ G + A SP
Sbjct: 28 PQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASP 63
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 21 PQPPSPTITIFS-SFLPGPGAAVWARAPGASIARSP 55
PQPP P S PGPG A R+ G + A SP
Sbjct: 28 PQPPPPPPGAHSPGATPGPGTATAERSSGVAPAASP 63
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 14 TMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASI 51
T++ +LP PP P I+ PG +W +P S+
Sbjct: 231 TVAVRILPAPPRPPIS-------SPGPIIWVSSPARSL 261
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 14 TMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASI 51
T++ +LP PP P I+ PG +W +P S+
Sbjct: 231 TVAVRILPAPPRPPIS-------SPGPIIWVSSPARSL 261
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 14 TMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASI 51
T++ +LP PP P I+ PG +W +P S+
Sbjct: 231 TVAVRILPAPPRPPIS-------SPGPIIWVSSPARSL 261
>gi|22749211 transmembrane and tetratricopeptide repeat containing 2
[Homo sapiens]
Length = 836
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MGRSAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQHWRR 60
+ + G PW Y + + +L + T FS L G G W G A P H
Sbjct: 75 LNHAIGGLNPWSYHLVNVLLHAAVTGLFTSFSKILLGDG--YWTFMAGLMFASHPIHTEA 132
Query: 61 RAG 63
AG
Sbjct: 133 VAG 135
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 9 GPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSP--QHWRRRAG 63
GP L + S PQPP +T+ SS P + G IA +P Q +R AG
Sbjct: 412 GPLLPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAG 468
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 9 GPWLYTMSSEVLPQPPSPTITIFSSFLPGPGAAVWARAPGASIARSP--QHWRRRAG 63
GP L + S PQPP +T+ SS P + G IA +P Q +R AG
Sbjct: 396 GPLLPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAG 452
>gi|239756425 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 27.7 bits (60), Expect = 2.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 10 PWLYTMSSEVLPQPPSPTI 28
PW + S+E LP PP P++
Sbjct: 85 PWTFLTSTETLPGPPCPSL 103
>gi|239750939 PREDICTED: hypothetical protein XP_002347609 [Homo
sapiens]
Length = 158
Score = 27.7 bits (60), Expect = 2.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 10 PWLYTMSSEVLPQPPSPTI 28
PW + S+E LP PP P++
Sbjct: 85 PWTFLTSTETLPGPPCPSL 103
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 20 LPQPPSPTITIFSSFLPGP-GAAVWARAPGASIARSPQHWRRRAG 63
LP PP P +F L G G A + PG+ AR P+ W+ AG
Sbjct: 439 LPGPPGPDGFLFG--LKGAKGRAGFPGLPGSPGARGPKGWKGDAG 481
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 9 GPWLYTMSSEVLPQPPSPTI---------TIFSSFLPGPGAAVWARAPGA 49
GPWL +++L QP + ++ + L PGA RAPGA
Sbjct: 395 GPWLEAQEAQLLSQPWQCQLYQGERLLGAAVYFTELSSPGAQRSGRAPGA 444
>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
sapiens]
Length = 616
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 SAAGEGPWLYTMSSEVLPQPPSPTITIFSSFLPGPGA 40
+A GEG + +T+SS S + +SFL GPGA
Sbjct: 298 AAPGEGVYGHTLSSSYTYSDASSSTLAPTSFLLGPGA 334
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 20 LPQPPSPTITIFSSFLP--------GPGAAVWARAPGASIARSPQHW 58
LP PP P + + LP GP ++ +R G+S A +P W
Sbjct: 10 LPTPPPPLLLLLLLLLPPPLLGDQVGPCRSLGSRGRGSSGACAPMGW 56
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 21 PQPPSPTITIFSSFLPGPGAAVWARAPGASIARSPQ---HWRRRA 62
P PP+P + + PG AP A R P WRRRA
Sbjct: 293 PAPPAPVPSTARARSPGARRGARELAPRAGRRRQPSGRTSWRRRA 337
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,234
Number of Sequences: 37866
Number of extensions: 183729
Number of successful extensions: 925
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 82
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.