Guide to the Human Genome
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Name: LOC100131320 Sequence: fasta or formatted (166aa) NCBI GI: 169163761
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         26           2
 C cysteine            1.8          3           1
 D aspartate           3.0          5           1
 E glutamate           3.0          5           1
 F phenylalanine       1.2          2           1
 G glycine            11.4         19           3
 H histidine           1.2          2           1
 I isoleucine          1.2          2           1
 K lysine              4.8          8           1
 L leucine             9.0         15           2
 M methionine          0.6          1           1
 N asparagine          3.6          6           2
 P proline            11.4         19           5
 Q glutamine           3.6          6           1
 R arginine           15.7         26           2
 S serine              4.2          7           1
 T threonine           3.0          5           1
 V valine              3.0          5           1
 W tryptophan          2.4          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100130819          0.134   PREDICTED: hypothetical protein 
LOC100130819          0.134   PREDICTED: hypothetical protein 
LOC100130819          0.134   PREDICTED: hypothetical protein 
LOC100292845          0.044   PREDICTED: hypothetical protein 
LOC729370             0.044   PREDICTED: hypothetical protein 
LOC100289230          0.044   PREDICTED: hypothetical protein XP_002342600 
SGK493                0.037   protein kinase-like protein SgK493 
LOC100293776          0.034   PREDICTED: hypothetical protein 
LOC643355             0.034   PREDICTED: hypothetical protein 
LOC100288658          0.034   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.034   PREDICTED: hypothetical protein 
LOC100292854          0.034   PREDICTED: hypothetical protein 
LOC100291403          0.034   PREDICTED: hypothetical protein XP_002347170 
LOC100288087          0.034   PREDICTED: hypothetical protein XP_002343063 
LOC100130360          0.034   PREDICTED: hypothetical protein 
LOC728767             0.031   PREDICTED: hypothetical protein 
LOC728767             0.031   PREDICTED: hypothetical protein 
LEMD2                 0.031   LEM domain containing 2 isoform 1 
MTCH1                 0.031   mitochondrial carrier homolog 1 
LOC441086             0.028   PREDICTED: hypothetical protein 
HIP1                  0.028   huntingtin interacting protein 1 
COL13A1               0.028   alpha 1 type XIII collagen isoform 20 
COL13A1               0.028   alpha 1 type XIII collagen isoform 18 
COL13A1               0.028   alpha 1 type XIII collagen isoform 17 
COL13A1               0.028   alpha 1 type XIII collagen isoform 16 
COL13A1               0.028   alpha 1 type XIII collagen isoform 14 
COL13A1               0.028   alpha 1 type XIII collagen isoform 10 
COL13A1               0.028   alpha 1 type XIII collagen isoform 9 
COL13A1               0.028   alpha 1 type XIII collagen isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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