Guide to the Human Genome
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Name: LOC100287344 Sequence: fasta or formatted (64aa) NCBI GI: 239744752
Description:

PREDICTED: hypothetical protein XP_002343247

Not currently referenced in the text

Other entries for this name:
alt mRNA {64aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1          9           2
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           3.1          2           1
 F phenylalanine       3.1          2           1
 G glycine            10.9          7           1
 H histidine           3.1          2           1
 I isoleucine          4.7          3           1
 K lysine              0.0          0           0
 L leucine             4.7          3           1
 M methionine          3.1          2           1
 N asparagine          0.0          0           0
 P proline            14.1          9           2
 Q glutamine           3.1          2           1
 R arginine            9.4          6           3
 S serine             12.5          8           2
 T threonine           4.7          3           1
 V valine              3.1          2           1
 W tryptophan          4.7          3           1
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343247 
LOC100291753          1.000   PREDICTED: hypothetical protein XP_002344747 
LOC100287344          1.000   PREDICTED: hypothetical protein 
ALPK3                 0.044   alpha-kinase 3 
CTSW                  0.044   cathepsin W preproprotein 
LOC100131320          0.044   PREDICTED: hypothetical protein isoform 1 
CUTA                  0.035   cutA divalent cation tolerance homolog isoform 2 [Ho...
CUTA                  0.035   cutA divalent cation tolerance homolog isoform 2 [Hom...
CUTA                  0.035   cutA divalent cation tolerance homolog isoform 3 [Ho...
CUTA                  0.035   cutA divalent cation tolerance homolog isoform 1 [Ho...
CUTA                  0.035   cutA divalent cation tolerance homolog isoform 2 [Ho...
SEZ6                  0.035   seizure related 6 homolog isoform 2 
SEZ6                  0.035   seizure related 6 homolog isoform 1 
LOC100131102          0.027   PREDICTED: hypothetical protein 
LOC100133636          0.027   PREDICTED: similar to hCG1806822 
SYN1                  0.027   synapsin I isoform Ia 
SYN1                  0.027   synapsin I isoform Ib 
LOC390595             0.027   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.027   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.027   PREDICTED: hypothetical protein 
TMTC2                 0.027   transmembrane and tetratricopeptide repeat containin...
CRTC1                 0.027   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.027   mucoepidermoid carcinoma translocated 1 isoform 1 [...
LOC100293900          0.027   PREDICTED: hypothetical protein 
LOC100290376          0.027   PREDICTED: hypothetical protein XP_002347609 
COL4A2                0.027   alpha 2 type IV collagen preproprotein 
LAG3                  0.027   lymphocyte-activation protein 3 precursor 
LOC100288667          0.018   PREDICTED: hypothetical protein XP_002344293 
CELSR2                0.018   cadherin EGF LAG seven-pass G-type receptor 2 
LOC100292934          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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