Guide to the Human Genome
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Name: LOC100290376 Sequence: fasta or formatted (158aa) NCBI GI: 239750939
Description:

PREDICTED: hypothetical protein XP_002347609

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         13           2
 C cysteine            3.8          6           2
 D aspartate           1.3          2           1
 E glutamate           3.8          6           2
 F phenylalanine       2.5          4           1
 G glycine             5.7          9           1
 H histidine           0.0          0           0
 I isoleucine          1.9          3           1
 K lysine              0.6          1           1
 L leucine            10.8         17           2
 M methionine          4.4          7           1
 N asparagine          1.3          2           1
 P proline             8.2         13           2
 Q glutamine           0.6          1           1
 R arginine            8.2         13           1
 S serine             22.2         35           3
 T threonine           9.5         15           2
 V valine              4.4          7           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347609 
LOC100293900          1.000   PREDICTED: hypothetical protein 
MUC5B                 0.059   mucin 5, subtype B, tracheobronchial 
MUC6                  0.042   mucin 6, gastric 
LOC100132635          0.035   PREDICTED: similar to mucin 5, partial 
SRRM2                 0.035   splicing coactivator subunit SRm300 
LOC729815             0.031   PREDICTED: hypothetical protein 
LOC729815             0.031   PREDICTED: hypothetical protein 
MUC5AC                0.028   mucin 5AC 
OTOG                  0.028   PREDICTED: otogelin isoform 1 
OTOG                  0.028   PREDICTED: otogelin isoform 2 
OTOG                  0.028   PREDICTED: otogelin isoform 2 
OTOG                  0.028   PREDICTED: otogelin isoform 1 
LOC100131514          0.028   PREDICTED: similar to hCG1747327, partial 
LOC100134138          0.024   PREDICTED: similar to mucin, partial 
LOC100133408          0.024   PREDICTED: similar to mucin 
ADRM1                 0.024   adhesion regulating molecule 1 precursor 
ADRM1                 0.024   adhesion regulating molecule 1 precursor 
TNRC18                0.021   trinucleotide repeat containing 18 
TGFB1I1               0.021   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.021   transforming growth factor beta 1 induced transcript...
LOC732156             0.021   PREDICTED: similar to Mucin-3A 
C20orf30              0.021   hypothetical protein LOC29058 isoform 1 
CYTSA                 0.017   cytospin A 
CYTSA                 0.017   cytospin A 
RIMBP3B               0.017   RIMS binding protein 3B 
RIMBP3C               0.017   RIMS binding protein 3C 
MUC7                  0.017   mucin 7, secreted precursor 
LOC729378             0.017   PREDICTED: hypothetical protein 
LOC729378             0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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