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Search of human proteins with 239755652
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755652 PREDICTED: hypothetical protein [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755652 PREDICTED: hypothetical protein [Homo sapiens] 330 3e-91
gi|239750190 PREDICTED: hypothetical protein [Homo sapiens] 330 3e-91
gi|239744495 PREDICTED: hypothetical protein XP_002343166 [Homo ... 330 3e-91
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 47 7e-06
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 44 6e-05
gi|18641360 collectin sub-family member 12 [Homo sapiens] 42 2e-04
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 42 2e-04
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 42 2e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 2e-04
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 42 3e-04
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 41 4e-04
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 41 4e-04
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens] 41 4e-04
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens] 41 4e-04
gi|4809279 annexin VII isoform 2 [Homo sapiens] 41 5e-04
gi|4502111 annexin VII isoform 1 [Homo sapiens] 41 5e-04
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 40 6e-04
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 40 6e-04
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 40 6e-04
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 40 6e-04
gi|55750053 atrophin-1 [Homo sapiens] 40 6e-04
gi|55750041 atrophin-1 [Homo sapiens] 40 6e-04
gi|18677735 proline-rich coiled-coil 1 [Homo sapiens] 40 6e-04
gi|153792074 proline rich 12 [Homo sapiens] 40 6e-04
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 40 8e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 40 8e-04
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 40 8e-04
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 40 8e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.001
gi|120587019 zinc finger protein 318 [Homo sapiens] 40 0.001
>gi|239755652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 330 bits (846), Expect = 3e-91
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL 60
MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL
Sbjct: 1 MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL 60
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP
Sbjct: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
Query: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK
Sbjct: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
>gi|239750190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 330 bits (846), Expect = 3e-91
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL 60
MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL
Sbjct: 1 MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL 60
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP
Sbjct: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
Query: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK
Sbjct: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
>gi|239744495 PREDICTED: hypothetical protein XP_002343166 [Homo
sapiens]
Length = 158
Score = 330 bits (846), Expect = 3e-91
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL 60
MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL
Sbjct: 1 MDGEVVDPRHLAGELAGDGVVMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRAL 60
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP
Sbjct: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
Query: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK
Sbjct: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 47.0 bits (110), Expect = 7e-06
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 64 PGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAPPAL 123
P P SS P P R + P P + S L+ P PP P P P PP
Sbjct: 85 PSIPLRCHSSSSPVCPRRKPRPRPQPRARSRSQPGLSAPPPPPARPPPP---PPPPPPPA 141
Query: 124 PSPQSWFAPCRLRFPPPRLQEETSCSG 150
P P++W R P R Q SCSG
Sbjct: 142 PRPRAWRGSRRRSRPGSRPQTRRSCSG 168
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 43.9 bits (102), Expect = 6e-05
Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 33 GQGCVRRRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSP 92
G+G RR G G GG+ H+ L P GS + PS + + T PP P
Sbjct: 41 GEGAAGRRD----GGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPP 96
Query: 93 MASFGALATPDPPVGGAPAPALLPGQAPPALPSPQSWFAP-CRLRFP-PPRLQEETSCSG 150
L TP PP+G P PG PP P AP R FP PP T +G
Sbjct: 97 RQ---CLPTPCPPLGHGLRPRPPPGTPPPRCPRT---LAPGPRGLFPAPPPAPARTGPAG 150
Query: 151 AKSSRTGK 158
++ G+
Sbjct: 151 KAAADRGR 158
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 18/116 (15%)
Query: 46 GALGAEG--GSRRHRALPGRPGGPRGSRLSSRPGVPSR-SRQLTPPPGSPMASFGALATP 102
G G++G G + R PG+PG P+G S PG P ++ P P P G T
Sbjct: 497 GGKGSKGSQGPKGSRGSPGKPG-PQGP--SGDPGPPGPPGKEGLPGPQGPPGFQGLQGTV 553
Query: 103 DPPVGGAPAPALLPG----------QAPPALPSPQSWFAPCRLRFPPPRLQEETSC 148
P G P P LPG + PP P P P L+ P E+ C
Sbjct: 554 GEP--GVPGPRGLPGLPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDNGC 607
Score = 27.7 bits (60), Expect = 4.3
Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 61 PGRPGGPRGSRLSSRPGVPS-----RSRQLTPPPGSPMASFGALATPDPP-----VGGAP 110
P P GPRG R S P P+ + + P P P G + PP G
Sbjct: 444 PPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKG 503
Query: 111 APALLPGQAPPALPSPQ 127
+ + P P PQ
Sbjct: 504 SQGPKGSRGSPGKPGPQ 520
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 59 ALPGRPGGPRG-----SRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPA 113
A PG PG P + SS PG P S LTPP G+ M F AT P + + AP
Sbjct: 3052 AYPGLPGLPPVLLPGMNGPSSLPGFPQNSNTLTPP-GAGMLGFPTSATSSPALSLSSAPT 3110
Query: 114 LLPGQAPPALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
Q PP P PPP +S SG ++ + K
Sbjct: 3111 KPLLQTPPPPP-------------PPPPPPPSSSLSGQQTEQQNK 3142
Score = 27.7 bits (60), Expect = 4.3
Identities = 22/73 (30%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQA 119
LP P P P S Q PP P P PP P P P A
Sbjct: 1967 LPPAPPQPSSMGPVKIPNTVSTPLQAPPPTPPP--------PPPPPPPPPPPPPPPPPSA 2018
Query: 120 PPALPSPQSWFAP 132
PP + P S P
Sbjct: 2019 PPQVQLPVSLDLP 2031
Score = 26.6 bits (57), Expect = 9.5
Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 23/127 (18%)
Query: 21 VMSLLVHQHAVEGQGCVRRRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPS 80
V+ L HQ V GQ + AL + + P P P P P
Sbjct: 1913 VLILKSHQEHVHGQFFP----YAALEKFARQYREAYDKLYPISPSSPE------TPPPPP 1962
Query: 81 RSRQLTPPPGSPMASFGALATPD---------PPVGGAPAPALLPGQAPPALPSPQSWFA 131
L P P P +S G + P+ PP P P P PP P P A
Sbjct: 1963 PPPPLPPAPPQP-SSMGPVKIPNTVSTPLQAPPPTPPPPPP---PPPPPPPPPPPPPPSA 2018
Query: 132 PCRLRFP 138
P +++ P
Sbjct: 2019 PPQVQLP 2025
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 45 LGALGAEGGS-RRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPD 103
LG GA G S R++P RPG P +S PG P R + P PG P S
Sbjct: 250 LGPRGAAGYSWSPQRSMPPRPGYPGTPMGASGPGYPLRGGR-APSPGYPQQSPYPATGGK 308
Query: 104 PPVGGAPAPALLPGQAPPALP--SPQSWFAPCRLRFPPP 140
PP P PGQ P++P P FPPP
Sbjct: 309 PPYPIQPQLPSFPGQPQPSVPLQPPYPPGPAPPYGFPPP 347
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 41 RHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALA 100
R P A A A PG P R + L++ P P+ + PP G A A+A
Sbjct: 147 RAPRAAAAAATAPPSPGPAQPG-PRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVA 205
Query: 101 TPDPPVGGAPAPALLPGQAPPALPSPQ 127
+PP+ P P P Q P P PQ
Sbjct: 206 AREPPLPPPPQPPAPPQQQQPPPPQPQ 232
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 55 RRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPAL 114
RR P P PRG+ ++ P + PPP +P+A+ A P A A A
Sbjct: 103 RRGATPPAPPRAPRGAPAAAAAAAPPPT-PAPPPPPAPVAA----AAPARAPRAAAAAAT 157
Query: 115 LPGQAPPALPSPQSWFAPCRLRFPPP 140
P PA P P++ A L PPP
Sbjct: 158 APPSPGPAQPGPRAQRA-APLAAPPP 182
Score = 32.0 bits (71), Expect = 0.23
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 73 SSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGG--APAPALLPGQAPPALPSPQSWF 130
S P P Q P +P + A PP G AP PA + + PP P PQ
Sbjct: 161 SPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPA-VAAREPPLPPPPQPPA 219
Query: 131 APCRLRFPPPRLQ 143
P + + PPP+ Q
Sbjct: 220 PPQQQQPPPPQPQ 232
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 41.6 bits (96), Expect = 3e-04
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPP 105
G LG E S+ P P+ +R P P RS P PGS ++ P
Sbjct: 210 GTLGKELVSQVSTRRAVHPPTPKRARTGPGPS-PLRSGHQVPSPGSVLSPHMLFGHPPSA 268
Query: 106 VGG-------APAPALLPGQAPPALPSPQ 127
GG +P P L P Q PPA P PQ
Sbjct: 269 AGGGDSGGEGSPEPLLPPAQGPPAPPRPQ 297
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 41.2 bits (95), Expect = 4e-04
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 48 LGAEGGSRR--HRALPGRPGGPRGSRLSSR---PGVPSRSRQLTPPPGSPMASFGALATP 102
+GAE +RR A P R S LS+ PG P+ + +P P S + +L
Sbjct: 257 VGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPSPIPCSSPGPWQSLCGL 316
Query: 103 DPPVGGAPAPALLPGQAPPALPSPQSWFAPCRLRFPPPRLQ 143
PP G P P PG+ P SP+ R R P LQ
Sbjct: 317 GPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQ 357
Score = 34.7 bits (78), Expect = 0.035
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 56 RHRALPGRPGGPRGSRLSSRPGVPSRSRQL-TPPPGSPMASFGALATPDPPVGGAPAPAL 114
R LPG GPRG +SR T PG P+ SF L PPVG
Sbjct: 207 RRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFL-PGGPPVGAEAWARR 265
Query: 115 LPGQAPPALPSPQS 128
+P A P PQS
Sbjct: 266 VPQPAAPPRRPPQS 279
Score = 28.1 bits (61), Expect = 3.3
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 48 LGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVG 107
+G +G P PG + RL+ G P+ R P M S PD G
Sbjct: 93 IGLDGPELEPDEGPEEPG-EKFRRLAGEGGDPALPRPRLYPAAPAMPS------PDVVYG 145
Query: 108 GAPAPALLPGQAPPALP--SPQSWFAPCRLRFPPPRL 142
P P P ALP S S F P + PP L
Sbjct: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL 182
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 41.2 bits (95), Expect = 4e-04
Identities = 34/87 (39%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 43 PALGALGAEGGS--RRHRALPGRPGGPRGSRLSSRPGVPS-RSRQLTPPPGSPMASFGAL 99
P G GGS + + LP R GPRG +P PS RS L PPGSP +S G
Sbjct: 459 PGAGDEARGGGSPTSKTQTLPSR--GPRGGGAGEQPPPPSARSTPLPGPPGSPRSS-GGT 515
Query: 100 ATPDPPVGGAPAPALLPGQAPPALPSP 126
P +P PG PP PSP
Sbjct: 516 PLHSPLHTPRASPTGTPGTTPP--PSP 540
>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
Length = 1337
Score = 41.2 bits (95), Expect = 4e-04
Identities = 37/120 (30%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 31 VEGQGCVRRRRHPALGALGAEGGSRRHRALPGRPG-GPRGSRLSSRPGVPSRSRQLTPPP 89
++G C R HP G GG H A P P P+ RL P P Q PP
Sbjct: 2 MQGNTCHRMSFHPGRGCPRGRGG---HGARPSAPSFRPQNLRLL-HPQQPPVQYQYEPP- 56
Query: 90 GSPMASFGALATPDPPVGGAPAPALLPGQA------PPALPSPQSWFAPCRLRFPPPRLQ 143
+ P +PAP LP + PP PS Q PC +R P P Q
Sbjct: 57 ----------SAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQ 106
>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
Length = 1374
Score = 41.2 bits (95), Expect = 4e-04
Identities = 37/120 (30%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 31 VEGQGCVRRRRHPALGALGAEGGSRRHRALPGRPG-GPRGSRLSSRPGVPSRSRQLTPPP 89
++G C R HP G GG H A P P P+ RL P P Q PP
Sbjct: 2 MQGNTCHRMSFHPGRGCPRGRGG---HGARPSAPSFRPQNLRLL-HPQQPPVQYQYEPP- 56
Query: 90 GSPMASFGALATPDPPVGGAPAPALLPGQA------PPALPSPQSWFAPCRLRFPPPRLQ 143
+ P +PAP LP + PP PS Q PC +R P P Q
Sbjct: 57 ----------SAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQ 106
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 40.8 bits (94), Expect = 5e-04
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 42 HPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALAT 101
+P G A GG + A G PG P+ S PGVP PP G+ + +
Sbjct: 54 YPGAGGYPAPGG---YPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGY----- 105
Query: 102 PDPP---VGGAPAPALLPGQAP 120
P PP GG PA LPG P
Sbjct: 106 PQPPSQSYGGGPAQVPLPGGFP 127
>gi|4502111 annexin VII isoform 1 [Homo sapiens]
Length = 466
Score = 40.8 bits (94), Expect = 5e-04
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 42 HPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALAT 101
+P G A GG + A G PG P+ S PGVP PP G+ + +
Sbjct: 54 YPGAGGYPAPGG---YPAPGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGY----- 105
Query: 102 PDPP---VGGAPAPALLPGQAP 120
P PP GG PA LPG P
Sbjct: 106 PQPPSQSYGGGPAQVPLPGGFP 127
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 40.4 bits (93), Expect = 6e-04
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 64 PGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG----QA 119
P P + + P +P S + PPP +P G TP PP P P LPG +
Sbjct: 565 PSVPSRAPVPPAPPLPGDSGTIIPPPPAP----GDSTTPPPPPPPPPPPPPLPGGVCISS 620
Query: 120 PPALPSPQSWFAPCRLRF-----PPPRLQE 144
PP+LP + P L PPP L E
Sbjct: 621 PPSLPGGTAISPPPPLSGDATIPPPPPLPE 650
Score = 40.0 bits (92), Expect = 8e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDP-PVG-GAPAPALLPGQ 118
P P P G +SS P +P ++PPP P++ + P P P G G P+P+ LPG
Sbjct: 607 PPPPPLPGGVCISSPPSLPG-GTAISPPP--PLSGDATIPPPPPLPEGVGIPSPSSLPGG 663
Query: 119 APPALPSPQSWFAPCRLRFPPPRL 142
A+P P R+ PPP L
Sbjct: 664 T--AIPPPPPLPGSARIPPPPPPL 685
Score = 37.0 bits (84), Expect = 0.007
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGG----APAPALL 115
+P P G+ + P +P +R PPP P+ + P PP+ G P P L
Sbjct: 654 IPSPSSLPGGTAIPPPPPLPGSARI--PPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPL 711
Query: 116 PGQAPPALPSPQSWFAPCRLRFPPP 140
PG P +P P + + PPP
Sbjct: 712 PG--GPGIPPPPPFPGGPGIPPPPP 734
Score = 36.6 bits (83), Expect = 0.009
Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVG-GAPAPALLP-G 117
LPG PG P PG+P PPPG M P PP G G PA +LP G
Sbjct: 711 LPGGPGIPPPPPFPGGPGIP------PPPPGMGM-------PPPPPFGFGVPAAPVLPFG 757
Query: 118 QAPPALPSPQ 127
P L P+
Sbjct: 758 LTPKKLYKPE 767
Score = 34.7 bits (78), Expect = 0.035
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 59 ALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPV-GGAPAPALLPG 117
A+P P P +R+ P S + PPP P+ + P PP+ GG P P
Sbjct: 665 AIPPPPPLPGSARIPPPPPPLPGSAGIPPPP-PPLPGEAGMPPPPPPLPGGPGIPPPPPF 723
Query: 118 QAPPALPSPQSWFAPCRLRFPPP 140
P +P P P + PPP
Sbjct: 724 PGGPGIPPP-----PPGMGMPPP 741
Score = 30.4 bits (67), Expect = 0.66
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPV---GG-APAPALL 115
+P P P G + S +P + + PPP P+ + P PP+ G P P L
Sbjct: 642 IPPPPPLPEGVGIPSPSSLPGGTA-IPPPP--PLPGSARIPPPPPPLPGSAGIPPPPPPL 698
Query: 116 PGQA---PPALPSPQSWFAPCRLRFPPP 140
PG+A PP P P P PPP
Sbjct: 699 PGEAGMPPPPPPLPGGPGIP-----PPP 721
Score = 28.1 bits (61), Expect = 3.3
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQA 119
LPG G P P P PPP P+ + P P GG P PG
Sbjct: 685 LPGSAGIPP-------PPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPPPGMG 737
Query: 120 PPALP 124
P P
Sbjct: 738 MPPPP 742
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 40.4 bits (93), Expect = 6e-04
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 64 PGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG----QA 119
P P + + P +P S + PPP +P G TP PP P P LPG +
Sbjct: 574 PSVPSRAPVPPAPPLPGDSGTIIPPPPAP----GDSTTPPPPPPPPPPPPPLPGGVCISS 629
Query: 120 PPALPSPQSWFAPCRLRF-----PPPRLQE 144
PP+LP + P L PPP L E
Sbjct: 630 PPSLPGGTAISPPPPLSGDATIPPPPPLPE 659
Score = 40.0 bits (92), Expect = 8e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDP-PVG-GAPAPALLPGQ 118
P P P G +SS P +P ++PPP P++ + P P P G G P+P+ LPG
Sbjct: 616 PPPPPLPGGVCISSPPSLPG-GTAISPPP--PLSGDATIPPPPPLPEGVGIPSPSSLPGG 672
Query: 119 APPALPSPQSWFAPCRLRFPPPRL 142
A+P P R+ PPP L
Sbjct: 673 T--AIPPPPPLPGSARIPPPPPPL 694
Score = 37.0 bits (84), Expect = 0.007
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGG----APAPALL 115
+P P G+ + P +P +R PPP P+ + P PP+ G P P L
Sbjct: 663 IPSPSSLPGGTAIPPPPPLPGSARI--PPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPL 720
Query: 116 PGQAPPALPSPQSWFAPCRLRFPPP 140
PG P +P P + + PPP
Sbjct: 721 PG--GPGIPPPPPFPGGPGIPPPPP 743
Score = 36.6 bits (83), Expect = 0.009
Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVG-GAPAPALLP-G 117
LPG PG P PG+P PPPG M P PP G G PA +LP G
Sbjct: 720 LPGGPGIPPPPPFPGGPGIP------PPPPGMGM-------PPPPPFGFGVPAAPVLPFG 766
Query: 118 QAPPALPSPQ 127
P L P+
Sbjct: 767 LTPKKLYKPE 776
Score = 34.7 bits (78), Expect = 0.035
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 59 ALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPV-GGAPAPALLPG 117
A+P P P +R+ P S + PPP P+ + P PP+ GG P P
Sbjct: 674 AIPPPPPLPGSARIPPPPPPLPGSAGIPPPP-PPLPGEAGMPPPPPPLPGGPGIPPPPPF 732
Query: 118 QAPPALPSPQSWFAPCRLRFPPP 140
P +P P P + PPP
Sbjct: 733 PGGPGIPPP-----PPGMGMPPP 750
Score = 30.4 bits (67), Expect = 0.66
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPV---GG-APAPALL 115
+P P P G + S +P + + PPP P+ + P PP+ G P P L
Sbjct: 651 IPPPPPLPEGVGIPSPSSLPGGTA-IPPPP--PLPGSARIPPPPPPLPGSAGIPPPPPPL 707
Query: 116 PGQA---PPALPSPQSWFAPCRLRFPPP 140
PG+A PP P P P PPP
Sbjct: 708 PGEAGMPPPPPPLPGGPGIP-----PPP 730
Score = 28.1 bits (61), Expect = 3.3
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQA 119
LPG G P P P PPP P+ + P P GG P PG
Sbjct: 694 LPGSAGIPP-------PPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPPPGMG 746
Query: 120 PPALP 124
P P
Sbjct: 747 MPPPP 751
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 40.4 bits (93), Expect = 6e-04
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 37 VRRRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASF 96
+R+R H G G GG RHR PG + P P+RS + PP +P +
Sbjct: 2 IRKRPHQQGG--GGGGGQGRHRHSSRAPG-------TRTPATPARSPR--PPLCAPRPAP 50
Query: 97 GALATPDPPVGGAPAPALLPGQAPPALPS 125
G +P P G P+P P A PA P+
Sbjct: 51 GRAQSPVPAAGAVPSP---PAAAHPARPA 76
Score = 28.9 bits (63), Expect = 1.9
Identities = 32/86 (37%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 42 HPALGALGAE--GGSRRHRA-------------LPGRP--GGPRGSRLSSRPGVPSRSRQ 84
HPA AL E RR RA L RP GG G + P+ SR+
Sbjct: 71 HPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGRPGKGPPPNPSRR 130
Query: 85 LTP-PPGSPMASFGALATPDPPVGGA 109
L P PPG ALAT P GGA
Sbjct: 131 LPPAPPGGRRTWLSALAT-GPAAGGA 155
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 40.4 bits (93), Expect = 6e-04
Identities = 38/102 (37%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 39 RRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGA 98
+RR PA+ A GSR PG P P GS L P VPSR PG
Sbjct: 782 QRRAPAVPP--ARPGSRG--PAPGPP--PAGSALGGAPPVPSR-------PG-------- 820
Query: 99 LATPDPPVGGAPAPALLPGQAPPALPSPQSWFAPCRLRFPPP 140
A+PDP G P P +APP +PS +P R P P
Sbjct: 821 -ASPDP-FGPPPQVPSRPNRAPPGVPSRSGQASPSRPESPRP 860
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.4 bits (93), Expect = 6e-04
Identities = 35/97 (36%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 42 HPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSP--MASFGAL 99
HP L G G L G P GP+G +S G P+ +Q PPP +P ++S GA
Sbjct: 216 HPQLYPGGTGG------VLSGPPMGPKGGGAASSVGGPNGGKQ-HPPPTTPISVSSSGAS 268
Query: 100 AT-----PDPPVGG-----APAPALLPGQAPPALPSP 126
P PVGG AP PA P P P P
Sbjct: 269 GAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPP 305
Score = 40.0 bits (92), Expect = 8e-04
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 29/119 (24%)
Query: 64 PGGPRGSRLSSRPGVPSRSRQLTPP-------PGSPMASFGALATPDPPVGGAPAPALLP 116
PG GS S R G P R +PP PGSP G P PP G + P+L P
Sbjct: 655 PGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPG----PLPPAGPSGLPSLPP 710
Query: 117 GQAPPA-----------------LPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
A PA +P+S P R PPP++ + S ++S+R K
Sbjct: 711 PPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPS-HASQSARFNK 768
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 22/80 (27%)
Query: 67 PRGSRLSSRPGVPSRSRQ---------LTPP---PGSPMASFGALATP-----DPPVGGA 109
P G + +S PG P ++ TPP PGSP SF P PP G
Sbjct: 625 PAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSP-PSFRTGTPPGYRGTSPPAGPG 683
Query: 110 P----APALLPGQAPPALPS 125
+P + PG PPA PS
Sbjct: 684 TFKPGSPTVGPGPLPPAGPS 703
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.4 bits (93), Expect = 6e-04
Identities = 35/97 (36%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 42 HPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSP--MASFGAL 99
HP L G G L G P GP+G +S G P+ +Q PPP +P ++S GA
Sbjct: 216 HPQLYPGGTGG------VLSGPPMGPKGGGAASSVGGPNGGKQ-HPPPTTPISVSSSGAS 268
Query: 100 AT-----PDPPVGG-----APAPALLPGQAPPALPSP 126
P PVGG AP PA P P P P
Sbjct: 269 GAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPP 305
Score = 40.0 bits (92), Expect = 8e-04
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 29/119 (24%)
Query: 64 PGGPRGSRLSSRPGVPSRSRQLTPP-------PGSPMASFGALATPDPPVGGAPAPALLP 116
PG GS S R G P R +PP PGSP G P PP G + P+L P
Sbjct: 655 PGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPG----PLPPAGPSGLPSLPP 710
Query: 117 GQAPPA-----------------LPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
A PA +P+S P R PPP++ + S ++S+R K
Sbjct: 711 PPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPS-HASQSARFNK 768
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 22/80 (27%)
Query: 67 PRGSRLSSRPGVPSRSRQ---------LTPP---PGSPMASFGALATP-----DPPVGGA 109
P G + +S PG P ++ TPP PGSP SF P PP G
Sbjct: 625 PAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSP-PSFRTGTPPGYRGTSPPAGPG 683
Query: 110 P----APALLPGQAPPALPS 125
+P + PG PPA PS
Sbjct: 684 TFKPGSPTVGPGPLPPAGPS 703
>gi|18677735 proline-rich coiled-coil 1 [Homo sapiens]
Length = 445
Score = 40.4 bits (93), Expect = 6e-04
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALA--TPDPPVGGAPAPALLPGQ 118
P P G + +SS P + + + P S M SF LA TP PP+ A LP
Sbjct: 16 PPNPAGLAATAMSSTPVPLAATSSFSSPNVSSMESFPPLAYSTPQPPLPPVRPSAPLPFV 75
Query: 119 APPALPSPQSWFAPCRLRFPPP 140
PPA+PS P PPP
Sbjct: 76 PPPAVPS----VPPLVTSMPPP 93
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 40.4 bits (93), Expect = 6e-04
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 76 PGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAPPALPSPQSWFAPCRL 135
PG+PS + TP P P+ TP P P P P PALPSP AP
Sbjct: 1437 PGLPSANSNGTPEP--PLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPS 1494
Query: 136 RFPPPRL 142
PPP L
Sbjct: 1495 SPPPPPL 1501
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 60 LPGRP-----GGPRGSRLSSRPG-----VPSRSRQLTPPPGSPMASFGALATPDP---PV 106
LPG P G P L +P P+ Q PPP P AL +P P P
Sbjct: 1436 LPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQP---ALPSPPPLVAPT 1492
Query: 107 GGAPAPALLPGQAPPALPSP 126
+P P LP PPA+PSP
Sbjct: 1493 PSSPPPPPLPPPPPPAMPSP 1512
Score = 37.0 bits (84), Expect = 0.007
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAP 120
P P P L S P + + + PPP P A+ +P PP A AP P +
Sbjct: 1471 PPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPE-E 1529
Query: 121 PALPSPQSWFAPCRLRFPPPRLQEETSCSGAKSSRTGK 158
PA PSP+ P + QE + G G+
Sbjct: 1530 PAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGE 1567
Score = 30.4 bits (67), Expect = 0.66
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 83 RQLTPPPGSPMASFGALATPDPPV--------GGAPAPALL---PGQAPPALPSPQSWFA 131
+ + P G P+A A+ P PP+ G P P LL P PP P+PQ
Sbjct: 1414 KDTSTPDGPPLAPAAAVPGP-PPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPP 1472
Query: 132 PCRLRFPPP 140
P PPP
Sbjct: 1473 P-----PPP 1476
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 40.0 bits (92), Expect = 8e-04
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 44 ALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP---------PGSPMA 94
++ +L +E R LP PGGPR S G PS S PP P
Sbjct: 915 SVASLSSENPYATIRDLPSLPGGPRESSYMEMKGPPSGSPPRQPPQFWDSQRRRQPQPQR 974
Query: 95 SFGALATPDPPVGGAPA----PALLPGQAPPALPSPQSWFAPCRLRFPPPR 141
G P P + + P L PG P SP++ P PP R
Sbjct: 975 DSGTYEQPSPLIHDRDSVGSQPPLPPGLPPGHYDSPKNSHIPGHYDLPPVR 1025
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 40.0 bits (92), Expect = 8e-04
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 35 GCVRRRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP--PGSP 92
G + P L + G + ++ LPG PG P LS +PG+P P PG P
Sbjct: 961 GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP---GLSGQPGLPGPPGPKGNPGLPGQP 1017
Query: 93 --------MASFGALATPDPP-VGGAPAPALLPGQ-APPALP 124
+ G + P P V G P P+ +PGQ P LP
Sbjct: 1018 GLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Score = 37.4 bits (85), Expect = 0.005
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 46 GALGAEG-----GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQ--------LTPPPGSP 92
GA G +G G++ R PG PG P PG+P + L P G+P
Sbjct: 114 GAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 93 --MASFGALATPDP-----PVGGAPAPALLPGQAPPALPSPQ 127
G P P P+G P L+ PP LP P+
Sbjct: 174 GYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPK 215
Score = 36.2 bits (82), Expect = 0.012
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 20/91 (21%)
Query: 43 PALGALGAEG--GSRRHRALPGRPGGP--RGS----RLSSRPGVPSRSRQLTPPPGSPMA 94
P + ++G G G + LPG PG P +GS L PG P Q PG P
Sbjct: 1068 PGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQ----PGLP-- 1121
Query: 95 SFGALATPDPP----VGGAPAPALLPGQAPP 121
G TP PP + G P LPG+ P
Sbjct: 1122 --GFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Score = 35.0 bits (79), Expect = 0.027
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGV-----PSRSRQLTPPPGSPMASFGALA 100
GALG +G R PG PG P + L PG P+ PPG P G
Sbjct: 769 GALGPKGD----RGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP--GIGVQG 822
Query: 101 TPDPPVGGAPAPALLPG 117
P PP G P P PG
Sbjct: 823 PPGPP--GIPGPIGQPG 837
Score = 35.0 bits (79), Expect = 0.027
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPG-----GPRGSRLSSRPGVPSRSRQLTPP--PGSPMAS 95
P G + E G+ LPG PG GP G L PG P + P PG P
Sbjct: 1281 PGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPG--LQGNPGRPGLNGMKGDPGLPGVP--G 1336
Query: 96 FGALATPDPPVGGA---PAPALLPGQAPPALPSP 126
F + P G A P L+ PP LP P
Sbjct: 1337 FPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGP 1370
Score = 34.7 bits (78), Expect = 0.035
Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 35 GCVRRRRHPALGALGAEG-----GSRRHRALPGRPG-----GPRGSRLSSRPGVPSRSRQ 84
GC + G G +G G H LPG PG GPRG + P +
Sbjct: 31 GCSPGSKCDCSGIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKG 90
Query: 85 LTPPPGSPMASFGALATPD----PPVGGAPAPALLPG 117
+ PPG P G TP P GAP P +PG
Sbjct: 91 IRGPPGLP----GFPGTPGLPGMPGHDGAPGPQGIPG 123
Score = 32.7 bits (73), Expect = 0.13
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 43 PALGALGAEGGSRRHRALPGRPG--GPRGS-RLSSRPGVPSRSRQLTPPPGSPMASFGAL 99
P L L + G +PG PG GP+G PGV PPG P + AL
Sbjct: 1195 PGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG-------PPGPPGSPGPAL 1247
Query: 100 ATPDPPVGGAPAPALLPGQAPPALPSP 126
P G P P Q PP P P
Sbjct: 1248 EGPK----GNPGP-----QGPPGRPGP 1265
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPS-------RSRQLTPPPGSPMAS 95
P L L G + L G PG P + + PG+P + P P
Sbjct: 1296 PGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1355
Query: 96 FGALATPDPPVGGAPAPA----LLPGQA-PPALP 124
G + P PP G P P+ ++ G A PP +P
Sbjct: 1356 PGLIGPPGPP--GLPGPSGQSIIIKGDAGPPGIP 1387
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSR--------PGVPSRS-----RQLTPPP 89
P L E GS+ LPG PG + L S+ PG+P S + L P
Sbjct: 931 PGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 990
Query: 90 GSPMASFGALATPDPPVGGAPAPALLPGQ----APPAL 123
G P S G P PP G LPGQ PP L
Sbjct: 991 GQPGLS-GQPGLPGPP--GPKGNPGLPGQPGLIGPPGL 1025
Score = 31.2 bits (69), Expect = 0.38
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 22/98 (22%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLT-----PPPGSP--MASFGA 98
G LG+ G LPG PG P L PG +T PPG+P G
Sbjct: 561 GELGSPGAP----GLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGN 616
Query: 99 LATPDPPVGGAPAP---------ALLPGQAPPALPSPQ 127
+ PP G P P A PGQ P +P P+
Sbjct: 617 IGPMGPPGFGPPGPVGEKGIQGVAGNPGQ--PGIPGPK 652
Score = 30.8 bits (68), Expect = 0.50
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATP 102
P L G G R PG PG P PG+P ++ P G + P
Sbjct: 851 PGLDVPGPPG----ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFP--GTKGEMGMMGPP 904
Query: 103 DPPVG-GAPAPALLPG-------QAPPALPSP 126
PP G P + +PG Q P LP P
Sbjct: 905 GPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGP 936
Score = 30.4 bits (67), Expect = 0.66
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 43 PALGALGAEGGSRRHRALPG---RPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGAL 99
P L L G++ LPG PG P +S PG P L PG P+ G
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPG----LPGEPG-PVGGGGHP 1157
Query: 100 ATPDPP-------VGGAPAPALLPGQ---------APPALP 124
P PP G P PA G+ PP LP
Sbjct: 1158 GQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Score = 30.0 bits (66), Expect = 0.86
Identities = 30/114 (26%), Positives = 37/114 (32%), Gaps = 38/114 (33%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVP-----------------SRSRQLTPP 88
G G E G + + PG+ G P + +PG+P + T P
Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
Query: 89 PGSPMASFGALATPDPPVG---GAPAPALLPG-------------QAPPALPSP 126
PG P L P P G G LPG Q PP LP P
Sbjct: 339 PGPP-----GLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP 387
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG-Q 118
LPG PG L PG+P + PG P S G P + G P P PG
Sbjct: 667 LPGNPGRDGDVGLPGDPGLPGQPGL----PGIP-GSKGEPGIPGIGLPGPPGPKGFPGIP 721
Query: 119 APPALP 124
PP P
Sbjct: 722 GPPGAP 727
Score = 28.5 bits (62), Expect = 2.5
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 51 EGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAP 110
+ G+ + LPG PG P G P + PG G L +P P G P
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGSKGEPG---DILTFPGM-KGDKGELGSPGAP--GLP 572
Query: 111 APALLPGQ-APPALPSPQ 127
PGQ P LP P+
Sbjct: 573 GLPGTPGQDGLPGLPGPK 590
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPP-PGSPMASFGALATP----DPPVGGAPAPALL 115
PG PG P + S PG + PP P P+ G P D + G P L
Sbjct: 877 PGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPG---L 933
Query: 116 PG-------QAPPALPSP 126
PG + P LP P
Sbjct: 934 PGPTGEKGSKGEPGLPGP 951
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG 117
PG PG P L PG PPG P G P + G P P LPG
Sbjct: 724 PGAPGTPGRIGLEGPPG----------PPGFP----GPKGEPGFALPGPPGPPGLPG 766
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATP 102
P L G+ + PG PG P L PG P + PPG+ + G L T
Sbjct: 1414 PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPG-PDGLQGPPGPPGTSSVAHGFLITR 1472
Query: 103 DPPVGGAP 110
AP
Sbjct: 1473 HSQTTDAP 1480
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 40.0 bits (92), Expect = 8e-04
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 35 GCVRRRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP--PGSP 92
G + P L + G + ++ LPG PG P LS +PG+P P PG P
Sbjct: 961 GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP---GLSGQPGLPGPPGPKGNPGLPGQP 1017
Query: 93 --------MASFGALATPDPP-VGGAPAPALLPGQ-APPALP 124
+ G + P P V G P P+ +PGQ P LP
Sbjct: 1018 GLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Score = 37.4 bits (85), Expect = 0.005
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 46 GALGAEG-----GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQ--------LTPPPGSP 92
GA G +G G++ R PG PG P PG+P + L P G+P
Sbjct: 114 GAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 93 --MASFGALATPDP-----PVGGAPAPALLPGQAPPALPSPQ 127
G P P P+G P L+ PP LP P+
Sbjct: 174 GYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPK 215
Score = 36.2 bits (82), Expect = 0.012
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 20/91 (21%)
Query: 43 PALGALGAEG--GSRRHRALPGRPGGP--RGS----RLSSRPGVPSRSRQLTPPPGSPMA 94
P + ++G G G + LPG PG P +GS L PG P Q PG P
Sbjct: 1068 PGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQ----PGLP-- 1121
Query: 95 SFGALATPDPP----VGGAPAPALLPGQAPP 121
G TP PP + G P LPG+ P
Sbjct: 1122 --GFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Score = 36.2 bits (82), Expect = 0.012
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPG--GPRGS-RLSSRPGVPSRSRQLTPPPGSPMASFGAL 99
P L L + G +PG PG GP+G PGV PPG P + AL
Sbjct: 1195 PGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG-------PPGPPGSPGPAL 1247
Query: 100 ATP--DPPVGGAPAPALLPG-QAPPALP 124
P +P G P LPG + PP LP
Sbjct: 1248 EGPKGNPGPQGPPGRPGLPGPEGPPGLP 1275
Score = 35.0 bits (79), Expect = 0.027
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGV-----PSRSRQLTPPPGSPMASFGALA 100
GALG +G R PG PG P + L PG P+ PPG P G
Sbjct: 769 GALGPKGD----RGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP--GIGVQG 822
Query: 101 TPDPPVGGAPAPALLPG 117
P PP G P P PG
Sbjct: 823 PPGPP--GIPGPIGQPG 837
Score = 35.0 bits (79), Expect = 0.027
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPG-----GPRGSRLSSRPGVPSRSRQLTPP--PGSPMAS 95
P G + E G+ LPG PG GP G L PG P + P PG P
Sbjct: 1275 PGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPG--LQGNPGRPGLNGMKGDPGLPGVP--G 1330
Query: 96 FGALATPDPPVGGA---PAPALLPGQAPPALPSP 126
F + P G A P L+ PP LP P
Sbjct: 1331 FPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGP 1364
Score = 34.7 bits (78), Expect = 0.035
Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 35 GCVRRRRHPALGALGAEG-----GSRRHRALPGRPG-----GPRGSRLSSRPGVPSRSRQ 84
GC + G G +G G H LPG PG GPRG + P +
Sbjct: 31 GCSPGSKCDCSGIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKG 90
Query: 85 LTPPPGSPMASFGALATPD----PPVGGAPAPALLPG 117
+ PPG P G TP P GAP P +PG
Sbjct: 91 IRGPPGLP----GFPGTPGLPGMPGHDGAPGPQGIPG 123
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPS-------RSRQLTPPPGSPMAS 95
P L L G + L G PG P + + PG+P + P P
Sbjct: 1290 PGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1349
Query: 96 FGALATPDPPVGGAPAPA----LLPGQA-PPALP 124
G + P PP G P P+ ++ G A PP +P
Sbjct: 1350 PGLIGPPGPP--GLPGPSGQSIIIKGDAGPPGIP 1381
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSR--------PGVPSRS-----RQLTPPP 89
P L E GS+ LPG PG + L S+ PG+P S + L P
Sbjct: 931 PGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 990
Query: 90 GSPMASFGALATPDPPVGGAPAPALLPGQ----APPAL 123
G P S G P PP G LPGQ PP L
Sbjct: 991 GQPGLS-GQPGLPGPP--GPKGNPGLPGQPGLIGPPGL 1025
Score = 31.2 bits (69), Expect = 0.38
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 22/98 (22%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLT-----PPPGSP--MASFGA 98
G LG+ G LPG PG P L PG +T PPG+P G
Sbjct: 561 GELGSPGAP----GLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGN 616
Query: 99 LATPDPPVGGAPAP---------ALLPGQAPPALPSPQ 127
+ PP G P P A PGQ P +P P+
Sbjct: 617 IGPMGPPGFGPPGPVGEKGIQGVAGNPGQ--PGIPGPK 652
Score = 30.8 bits (68), Expect = 0.50
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATP 102
P L G G R PG PG P PG+P ++ P G + P
Sbjct: 851 PGLDVPGPPG----ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFP--GTKGEMGMMGPP 904
Query: 103 DPPVG-GAPAPALLPG-------QAPPALPSP 126
PP G P + +PG Q P LP P
Sbjct: 905 GPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGP 936
Score = 30.4 bits (67), Expect = 0.66
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 43 PALGALGAEGGSRRHRALPG---RPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGAL 99
P L L G++ LPG PG P +S PG P L PG P+ G
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPG----LPGEPG-PVGGGGHP 1157
Query: 100 ATPDPP-------VGGAPAPALLPGQ---------APPALP 124
P PP G P PA G+ PP LP
Sbjct: 1158 GQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Score = 30.0 bits (66), Expect = 0.86
Identities = 30/114 (26%), Positives = 37/114 (32%), Gaps = 38/114 (33%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVP-----------------SRSRQLTPP 88
G G E G + + PG+ G P + +PG+P + T P
Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
Query: 89 PGSPMASFGALATPDPPVG---GAPAPALLPG-------------QAPPALPSP 126
PG P L P P G G LPG Q PP LP P
Sbjct: 339 PGPP-----GLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP 387
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG-Q 118
LPG PG L PG+P + PG P S G P + G P P PG
Sbjct: 667 LPGNPGRDGDVGLPGDPGLPGQPGL----PGIP-GSKGEPGIPGIGLPGPPGPKGFPGIP 721
Query: 119 APPALP 124
PP P
Sbjct: 722 GPPGAP 727
Score = 28.5 bits (62), Expect = 2.5
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 51 EGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAP 110
+ G+ + LPG PG P G P + PG G L +P P G P
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGSKGEPG---DILTFPGM-KGDKGELGSPGAP--GLP 572
Query: 111 APALLPGQ-APPALPSPQ 127
PGQ P LP P+
Sbjct: 573 GLPGTPGQDGLPGLPGPK 590
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPP-PGSPMASFGALATP----DPPVGGAPAPALL 115
PG PG P + S PG + PP P P+ G P D + G P L
Sbjct: 877 PGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPG---L 933
Query: 116 PG-------QAPPALPSP 126
PG + P LP P
Sbjct: 934 PGPTGEKGSKGEPGLPGP 951
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG 117
PG PG P L PG PPG P G P + G P P LPG
Sbjct: 724 PGAPGTPGRIGLEGPPG----------PPGFP----GPKGEPGFALPGPPGPPGLPG 766
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATP 102
P L G+ + PG PG P L PG P + PPG+ + G L T
Sbjct: 1408 PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPG-PDGLQGPPGPPGTSSVAHGFLITR 1466
Query: 103 DPPVGGAP 110
AP
Sbjct: 1467 HSQTTDAP 1474
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 40.0 bits (92), Expect = 8e-04
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 35 GCVRRRRHPALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP--PGSP 92
G + P L + G + ++ LPG PG P LS +PG+P P PG P
Sbjct: 961 GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQP---GLSGQPGLPGPPGPKGNPGLPGQP 1017
Query: 93 --------MASFGALATPDPP-VGGAPAPALLPGQ-APPALP 124
+ G + P P V G P P+ +PGQ P LP
Sbjct: 1018 GLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Score = 37.4 bits (85), Expect = 0.005
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 46 GALGAEG-----GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQ--------LTPPPGSP 92
GA G +G G++ R PG PG P PG+P + L P G+P
Sbjct: 114 GAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 93 --MASFGALATPDP-----PVGGAPAPALLPGQAPPALPSPQ 127
G P P P+G P L+ PP LP P+
Sbjct: 174 GYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPK 215
Score = 36.2 bits (82), Expect = 0.012
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 20/91 (21%)
Query: 43 PALGALGAEG--GSRRHRALPGRPGGP--RGS----RLSSRPGVPSRSRQLTPPPGSPMA 94
P + ++G G G + LPG PG P +GS L PG P Q PG P
Sbjct: 1068 PGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQ----PGLP-- 1121
Query: 95 SFGALATPDPP----VGGAPAPALLPGQAPP 121
G TP PP + G P LPG+ P
Sbjct: 1122 --GFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Score = 35.0 bits (79), Expect = 0.027
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGV-----PSRSRQLTPPPGSPMASFGALA 100
GALG +G R PG PG P + L PG P+ PPG P G
Sbjct: 769 GALGPKGD----RGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP--GIGVQG 822
Query: 101 TPDPPVGGAPAPALLPG 117
P PP G P P PG
Sbjct: 823 PPGPP--GIPGPIGQPG 837
Score = 35.0 bits (79), Expect = 0.027
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPG-----GPRGSRLSSRPGVPSRSRQLTPP--PGSPMAS 95
P G + E G+ LPG PG GP G L PG P + P PG P
Sbjct: 1278 PGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPG--LQGNPGRPGLNGMKGDPGLPGVP--G 1333
Query: 96 FGALATPDPPVGGA---PAPALLPGQAPPALPSP 126
F + P G A P L+ PP LP P
Sbjct: 1334 FPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGP 1367
Score = 34.7 bits (78), Expect = 0.035
Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 35 GCVRRRRHPALGALGAEG-----GSRRHRALPGRPG-----GPRGSRLSSRPGVPSRSRQ 84
GC + G G +G G H LPG PG GPRG + P +
Sbjct: 31 GCSPGSKCDCSGIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKG 90
Query: 85 LTPPPGSPMASFGALATPD----PPVGGAPAPALLPG 117
+ PPG P G TP P GAP P +PG
Sbjct: 91 IRGPPGLP----GFPGTPGLPGMPGHDGAPGPQGIPG 123
Score = 33.1 bits (74), Expect = 0.10
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 43 PALGALGAEGGSRRHRALPGRPG--GPRGS-RLSSRPGVPSRSRQLTPPPGSP-MASFGA 98
P L L + G +PG PG GP+G PGV PPGSP A G
Sbjct: 1195 PGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP----PGPPGSPGPALEGP 1250
Query: 99 LATPDPP-VGGAPAPALLPG-QAPPALP 124
P P G P LPG + PP LP
Sbjct: 1251 KGNPGPQGPPGRPGFQGLPGPEGPPGLP 1278
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPS-------RSRQLTPPPGSPMAS 95
P L L G + L G PG P + + PG+P + P P
Sbjct: 1293 PGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1352
Query: 96 FGALATPDPPVGGAPAPA----LLPGQA-PPALP 124
G + P PP G P P+ ++ G A PP +P
Sbjct: 1353 PGLIGPPGPP--GLPGPSGQSIIIKGDAGPPGIP 1384
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSR--------PGVPSRS-----RQLTPPP 89
P L E GS+ LPG PG + L S+ PG+P S + L P
Sbjct: 931 PGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 990
Query: 90 GSPMASFGALATPDPPVGGAPAPALLPGQ----APPAL 123
G P S G P PP G LPGQ PP L
Sbjct: 991 GQPGLS-GQPGLPGPP--GPKGNPGLPGQPGLIGPPGL 1025
Score = 31.2 bits (69), Expect = 0.38
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 22/98 (22%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLT-----PPPGSP--MASFGA 98
G LG+ G LPG PG P L PG +T PPG+P G
Sbjct: 561 GELGSPGAP----GLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGN 616
Query: 99 LATPDPPVGGAPAP---------ALLPGQAPPALPSPQ 127
+ PP G P P A PGQ P +P P+
Sbjct: 617 IGPMGPPGFGPPGPVGEKGIQGVAGNPGQ--PGIPGPK 652
Score = 30.8 bits (68), Expect = 0.50
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATP 102
P L G G R PG PG P PG+P ++ P G + P
Sbjct: 851 PGLDVPGPPG----ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFP--GTKGEMGMMGPP 904
Query: 103 DPPVG-GAPAPALLPG-------QAPPALPSP 126
PP G P + +PG Q P LP P
Sbjct: 905 GPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGP 936
Score = 30.4 bits (67), Expect = 0.66
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 43 PALGALGAEGGSRRHRALPG---RPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGAL 99
P L L G++ LPG PG P +S PG P L PG P+ G
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPG----LPGEPG-PVGGGGHP 1157
Query: 100 ATPDPP-------VGGAPAPALLPGQ---------APPALP 124
P PP G P PA G+ PP LP
Sbjct: 1158 GQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Score = 30.0 bits (66), Expect = 0.86
Identities = 30/114 (26%), Positives = 37/114 (32%), Gaps = 38/114 (33%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVP-----------------SRSRQLTPP 88
G G E G + + PG+ G P + +PG+P + T P
Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
Query: 89 PGSPMASFGALATPDPPVG---GAPAPALLPG-------------QAPPALPSP 126
PG P L P P G G LPG Q PP LP P
Sbjct: 339 PGPP-----GLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP 387
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 60 LPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG-Q 118
LPG PG L PG+P + PG P S G P + G P P PG
Sbjct: 667 LPGNPGRDGDVGLPGDPGLPGQPGL----PGIP-GSKGEPGIPGIGLPGPPGPKGFPGIP 721
Query: 119 APPALP 124
PP P
Sbjct: 722 GPPGAP 727
Score = 28.5 bits (62), Expect = 2.5
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 51 EGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAP 110
+ G+ + LPG PG P G P + PG G L +P P G P
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGSKGEPG---DILTFPGM-KGDKGELGSPGAP--GLP 572
Query: 111 APALLPGQ-APPALPSPQ 127
PGQ P LP P+
Sbjct: 573 GLPGTPGQDGLPGLPGPK 590
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPP-PGSPMASFGALATP----DPPVGGAPAPALL 115
PG PG P + S PG + PP P P+ G P D + G P L
Sbjct: 877 PGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPG---L 933
Query: 116 PG-------QAPPALPSP 126
PG + P LP P
Sbjct: 934 PGPTGEKGSKGEPGLPGP 951
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
Query: 61 PGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPG 117
PG PG P L PG PPG P G P + G P P LPG
Sbjct: 724 PGAPGTPGRIGLEGPPG----------PPGFP----GPKGEPGFALPGPPGPPGLPG 766
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 43 PALGALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATP 102
P L G+ + PG PG P L PG P + PPG+ + G L T
Sbjct: 1411 PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPG-PDGLQGPPGPPGTSSVAHGFLITR 1469
Query: 103 DPPVGGAP 110
AP
Sbjct: 1470 HSQTTDAP 1477
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 44 ALGALGAEG--GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP-PGSPMASFGALA 100
A G G +G G R +PG PGGP PG S + PP P P G +
Sbjct: 520 AAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG 579
Query: 101 TPDPPVGGAPAPALLPGQAPPALPSPQ 127
P P G AP + P P PQ
Sbjct: 580 FPGPK-GNDGAPGKNGERGGPGGPGPQ 605
Score = 35.0 bits (79), Expect = 0.027
Identities = 35/99 (35%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 46 GALGAEG--GSRRHRALPGRPG-----------GPRGSRLSSRPGVPSRSRQLTPPPGSP 92
G G G G + R PG PG GP GS + P PS S PPG P
Sbjct: 849 GPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG-P 907
Query: 93 MASFGALATP--DPPVG--GAPAPALLPG-QAPPALPSP 126
+ GA +P P G G P PG Q PP P P
Sbjct: 908 AGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Score = 34.7 bits (78), Expect = 0.035
Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 29/116 (25%)
Query: 34 QGCVRRRRHPAL-GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTP--PPG 90
+G R P L GA GA G R G+PG P + PG P ++ P PG
Sbjct: 302 RGAPGERGRPGLPGAAGARGNDGA-RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG 360
Query: 91 S-----------PMASFGALATPDPP-VGGAP-------------APALLPGQAPP 121
S P GA P PP + G+P AP L+ + PP
Sbjct: 361 SNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPP 416
Score = 33.5 bits (75), Expect = 0.077
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 46 GALGAEG--GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASF-GALATP 102
G G G G + PG G P GS + PG + P G A F GA P
Sbjct: 822 GGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLP 881
Query: 103 DPPVG----GAPAPALLPGQAPPALPS 125
PP G P P+ PG+ P P+
Sbjct: 882 GPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Score = 30.0 bits (66), Expect = 0.86
Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 50 AEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP-------PGSPMASFGALATP 102
A GG + G PG P S PG P PP P P GA+ P
Sbjct: 165 AVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIG-P 223
Query: 103 DPPVG--------GAPAPALLPGQAPPALPSP 126
P G G P LPG PP + P
Sbjct: 224 SGPAGKDGESGRPGRPGERGLPG--PPGIKGP 253
Score = 30.0 bits (66), Expect = 0.86
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 46 GALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPP 105
GA G +G HR PG PG P + + G +P P P G P
Sbjct: 1101 GAAGIKG----HRGFPGNPGAPGSPGPAGQQGAIG-----SPGPAGPRGPVGPSGPPGKD 1151
Query: 106 -VGGAPAPALLPG 117
G P P PG
Sbjct: 1152 GTSGHPGPIGPPG 1164
Score = 28.5 bits (62), Expect = 2.5
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 47 ALGAEGGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGALATPDPPV 106
A+G G PG PG P S PG P PPG P G P PP
Sbjct: 165 AVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPG----YQGPPGEP-GQAGPSGPPGPPG 219
Query: 107 G-GAPAPALLPGQA-PPALPSPQSWFAPCRLRFP 138
G PA G++ P P + P ++ P
Sbjct: 220 AIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGP 253
Score = 28.5 bits (62), Expect = 2.5
Identities = 30/96 (31%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 46 GALGAEG--GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP--------PGSPMAS 95
G GA G G R GRPG P + G Q PP PGSP A
Sbjct: 291 GENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAK 350
Query: 96 FGALATPDPPVGGAPAPALLPG-------QAPPALP 124
P GAP PG Q PP P
Sbjct: 351 GEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP 386
Score = 28.1 bits (61), Expect = 3.3
Identities = 29/83 (34%), Positives = 30/83 (36%), Gaps = 20/83 (24%)
Query: 61 PGRPGGPRGSRLSSRPGVP--SRSRQLTPPPGSPMASFGALATPDP--PVG--------- 107
PGR G P L R G P R PG+P GA P P PVG
Sbjct: 1010 PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP----GAPGHPGPPGPVGPAGKSGDRG 1065
Query: 108 --GAPAPALLPGQA-PPALPSPQ 127
G PA PG A P PQ
Sbjct: 1066 ESGPAGPAGAPGPAGSRGAPGPQ 1088
Score = 27.3 bits (59), Expect = 5.6
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 42 HPALGALGAEG--GSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPPPGSPMASFGAL 99
HP G +G G G+R R G PG P +PG P PPG+P G +
Sbjct: 1156 HP--GPIGPPGPRGNRGERGSEGSPGHP------GQPGPPG-------PPGAPGPCCGGV 1200
Query: 100 -ATPDPPVGGAPAPALLP 116
A +GG A P
Sbjct: 1201 GAAAIAGIGGEKAGGFAP 1218
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 52 GGSRRHRALPGRPGGPRGSRLSSRPGVPSRSRQLTPP--PGSPMASFGALATPDPPVGGA 109
GG R G GP +R SS P PS S TP P SP G A+P PP G
Sbjct: 20 GGGPRSGRSSGSSSGP--ARRSSPPPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRGRR 77
Query: 110 PAPALLPGQAPPALPSPQSWFAPCRLRFPP 139
+P+ P +A PSP R FPP
Sbjct: 78 VSPS--PPRARRGSPSPPRG----RRLFPP 101
Score = 26.6 bits (57), Expect = 9.5
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 65 GGPRGSRLSSRPGVPSR-SRQLTPPPGSPMASFGALATPDPPVGGAPAPALLPGQAPPAL 123
G P + + PS Q+ PPP P PP P P ++P A P+
Sbjct: 1419 GSPEEKVVLAEKSEPSHLPEQILPPP------------PPPPPPPPPPPPVIPHPAAPSA 1466
Query: 124 PSPQSWFAPCR 134
+ AP +
Sbjct: 1467 AQANAILAPVK 1477
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,728,604
Number of Sequences: 37866
Number of extensions: 732941
Number of successful extensions: 10171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 1242
Number of HSP's that attempted gapping in prelim test: 5512
Number of HSP's gapped (non-prelim): 4564
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.