Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287504 Sequence: fasta or formatted (158aa) NCBI GI: 239750190
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {158aa} PREDICTED: hypothetical protein XP_002343166
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         17           1
 C cysteine            1.9          3           1
 D aspartate           2.5          4           1
 E glutamate           3.8          6           2
 F phenylalanine       1.9          3           1
 G glycine            13.9         22           2
 H histidine           3.2          5           1
 I isoleucine          0.0          0           0
 K lysine              1.3          2           1
 L leucine             9.5         15           2
 M methionine          1.9          3           1
 N asparagine          0.0          0           0
 P proline            15.8         25           3
 Q glutamine           3.8          6           1
 R arginine           11.4         18           4
 S serine              9.5         15           2
 T threonine           2.5          4           1
 V valine              5.7          9           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293702          1.000   PREDICTED: hypothetical protein 
LOC100287504          1.000   PREDICTED: hypothetical protein XP_002343166 
USP51                 0.072   ubiquitin specific protease 51 
LOC646509             0.062   PREDICTED: hypothetical protein 
COLEC12               0.056   collectin sub-family member 12 
ZFHX4                 0.056   zinc finger homeodomain 4 
VPS37C                0.056   vacuolar protein sorting 37C 
SAMD1                 0.056   sterile alpha motif domain containing 1 
LOC100291609          0.056   PREDICTED: hypothetical protein XP_002346061 
LOC729991-MEF2B       0.052   myocyte enhancer factor 2B isoform b 
BRSK1                 0.052   BR serine/threonine kinase 1 
RNASEN                0.052   ribonuclease III, nuclear isoform 2 
RNASEN                0.052   ribonuclease III, nuclear isoform 1 
ANXA7                 0.052   annexin VII isoform 2 
ANXA7                 0.052   annexin VII isoform 1 
DIAPH1                0.049   diaphanous 1 isoform 2 
DIAPH1                0.049   diaphanous 1 isoform 1 
LOC100130360          0.049   PREDICTED: hypothetical protein 
DNM1                  0.049   dynamin 1 isoform 1 
ATN1                  0.049   atrophin-1 
ATN1                  0.049   atrophin-1 
PRRC1                 0.049   proline-rich coiled-coil 1 
PRR12                 0.049   proline rich 12 
PEAR1                 0.049   platelet endothelial aggregation receptor 1 
COL4A5                0.049   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.049   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.049   type IV collagen alpha 5 isoform 3 precursor 
COL3A1                0.049   collagen type III alpha 1 preproprotein 
ZNF318                0.049   zinc finger protein 318 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press