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Search of human proteins with 239755587
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755587 PREDICTED: hypothetical protein [Homo sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755587 PREDICTED: hypothetical protein [Homo sapiens] 426 e-120
gi|239744407 PREDICTED: hypothetical protein XP_002343137 [Homo ... 426 e-120
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 44 1e-04
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 44 1e-04
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 43 2e-04
gi|18959210 WIRE protein [Homo sapiens] 43 2e-04
gi|40353727 synaptopodin isoform A [Homo sapiens] 42 3e-04
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 4e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 5e-04
gi|24431933 reticulon 4 isoform B [Homo sapiens] 41 8e-04
gi|47519490 reticulon 4 isoform D [Homo sapiens] 41 8e-04
gi|24431935 reticulon 4 isoform A [Homo sapiens] 41 8e-04
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 41 8e-04
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 41 8e-04
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 41 8e-04
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 40 0.001
gi|19924099 synapsin I isoform Ia [Homo sapiens] 40 0.001
gi|19924097 synapsin I isoform Ib [Homo sapiens] 40 0.001
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 40 0.001
gi|150170670 piccolo isoform 2 [Homo sapiens] 40 0.001
gi|150378539 piccolo isoform 1 [Homo sapiens] 40 0.001
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 40 0.002
gi|60460889 Myb protein P42POP [Homo sapiens] 40 0.002
gi|241982780 programmed cell death 6 interacting protein isoform... 39 0.002
gi|22027538 programmed cell death 6 interacting protein isoform ... 39 0.002
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 39 0.002
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 39 0.002
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 39 0.002
gi|120587019 zinc finger protein 318 [Homo sapiens] 39 0.002
>gi|239755587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 426 bits (1096), Expect = e-120
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MVSRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQS 60
MVSRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQS
Sbjct: 1 MVSRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQS 60
Query: 61 RNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRP 120
RNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRP
Sbjct: 61 RNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRP 120
Query: 121 TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAG 180
TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAG
Sbjct: 121 TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAG 180
Query: 181 AESAQDLSGSLRGASREAAAELHGKCSPLTP 211
AESAQDLSGSLRGASREAAAELHGKCSPLTP
Sbjct: 181 AESAQDLSGSLRGASREAAAELHGKCSPLTP 211
>gi|239744407 PREDICTED: hypothetical protein XP_002343137 [Homo
sapiens]
Length = 211
Score = 426 bits (1096), Expect = e-120
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MVSRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQS 60
MVSRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQS
Sbjct: 1 MVSRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQS 60
Query: 61 RNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRP 120
RNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRP
Sbjct: 61 RNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRP 120
Query: 121 TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAG 180
TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAG
Sbjct: 121 TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAG 180
Query: 181 AESAQDLSGSLRGASREAAAELHGKCSPLTP 211
AESAQDLSGSLRGASREAAAELHGKCSPLTP
Sbjct: 181 AESAQDLSGSLRGASREAAAELHGKCSPLTP 211
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 43.9 bits (102), Expect = 1e-04
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 47 RSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGS 106
R P PA PP R PA ASP PS++ SP + P P P DSG ET S
Sbjct: 776 RGPPPAPPPPPPPPRAPADPAASPDPPSAVASPG----SGLSSPGPKPGDSGYETETPFS 831
Query: 107 PSGPWRMAG 115
P G + G
Sbjct: 832 PEGAFPGGG 840
Score = 27.7 bits (60), Expect = 7.4
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 31 DYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPP 90
D SS +L+ +P +APP + +P G A+P P RG P
Sbjct: 735 DDSSLRAERGSLADLPMAPPASAPP---EFLDPLMGAAAPQYPG---------RGPPPAP 782
Query: 91 PPLPVDSGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATS 130
PP P SP P +A + GP S
Sbjct: 783 PPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDS 822
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 43.5 bits (101), Expect = 1e-04
Identities = 43/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 49 PAPAAPPLGRQSRNPARGL------ASPSTPSSLLSPSRIPRGQAA---------PPPPL 93
P P PP G + PA ASP TP PS P G+ A PPPPL
Sbjct: 29 PPPPTPPPGEPAPVPAAPRYLPPLPASPETPERAAGPSE-PLGEVAPRCRGADELPPPPL 87
Query: 94 PVD-SGPETTLRG-SPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWT 151
P+ +G E G S GP R+ G G S A + G R R ++ T
Sbjct: 88 PLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAGGER------ERRGAGDQPET 141
Query: 152 R--CLSMAASS 160
R C S ++SS
Sbjct: 142 RSVCSSRSSSS 152
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 43.1 bits (100), Expect = 2e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 49 PAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTL-RGSP 107
PAP A P G + PA P+ ++ +P+ P G AA PP S P G
Sbjct: 232 PAPTANPTGPAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVT 291
Query: 108 SGPWRMAGVKKRPTGAGP 125
+G +A VK P G GP
Sbjct: 292 AGLGPVAEVKSSPVGGGP 309
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 43.1 bits (100), Expect = 2e-04
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 30/122 (24%)
Query: 34 SRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLAS--------------PSTPSSLLSP 79
SRP+ S+ + S AP PP GR++ P L P TP L P
Sbjct: 160 SRPNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQRLHP 219
Query: 80 SRIPRGQAAPPP------PLPVDSGPETTLRGSPSGPWRMAGVKKRPTGA--GPSTATSQ 131
R G APPP P+ + +GP P P+R +P G GPS+ T++
Sbjct: 220 GR--EGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYR------QPPGVPNGPSSPTNE 271
Query: 132 GS 133
+
Sbjct: 272 SA 273
Score = 37.4 bits (85), Expect = 0.009
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 24 RGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIP 83
RGLA S+ P LS +R P PA P P+RG A P P + + +R
Sbjct: 292 RGLAPPPPTSASPSLLS-----NRPPPPARDP-------PSRGAAPPPPPPVIRNGAR-- 337
Query: 84 RGQAAPPPPLPVDSGPETTLRGSPSGP 110
A PPPP G E RG P P
Sbjct: 338 --DAPPPPPPYRMHGSEPPSRGKPPPP 362
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 42.4 bits (98), Expect = 3e-04
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 17 PMKRSWG-RGLAQHR-DYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPS 74
PM SW R ++ R + +RP +L +R+ AA R+S +P A P
Sbjct: 727 PMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAAR---RKSASPRSAGAENPRP- 782
Query: 75 SLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPW-RMAGVKKRPTGAGPSTATSQGS 133
SP R P PPPP P P+ GS + P A + + P AGPS+ TS S
Sbjct: 783 --FSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSPLPAGPSSCTSPRS 840
Score = 30.4 bits (67), Expect = 1.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 68 ASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSP 107
ASP+ PSSL +P+G P P LP S L SP
Sbjct: 588 ASPAKPSSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSP 627
Score = 27.3 bits (59), Expect = 9.7
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 55/230 (23%)
Query: 5 PHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPP---LGRQSR 61
P++++ ++P+K A+ ++ P S+L L P A PP L R SR
Sbjct: 564 PYQLRPSLFVLSPIKEP-----AKVSPRAASPAKPSSLDLVPNLPKGALPPSPALPRPSR 618
Query: 62 NPARGLASPSTPS--------------SLLSPSRI--PRGQAAP---------------- 89
+ SP S S +SPSR PR + AP
Sbjct: 619 SSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDR 678
Query: 90 -------PPPLPVDSGPETTLRGSPS-GPW---RMAGVKKRPTGAGPSTATSQGSRCSVA 138
PP P S P ++L G S GPW R + + P P + S SV+
Sbjct: 679 RESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVS 738
Query: 139 GTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAGAESAQDLS 188
A + ++ A + ++ R+ S + AGAE+ + S
Sbjct: 739 PLRPETEARPPSRQLQALLARNIIN----AARRKSASPRSAGAENPRPFS 784
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.0 bits (97), Expect = 4e-04
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
+RSPAP A G+ R P PS P P+ P A PP P PE+ L
Sbjct: 95 TRSPAPLARRPGKPPRRPKGAAGHPSAP-----PAAAPAAPAQPPAP-----RPESQLSD 144
Query: 106 SPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTR 152
P W ++RP G G S ++ + G A A R+ R
Sbjct: 145 RPQS-W-----EQRPRGPGRSARSAGAAAPPAGGLAQARQARRRRPR 185
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.6 bits (96), Expect = 5e-04
Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 18/165 (10%)
Query: 49 PAPAAPPLGRQSRNPARGLASPSTPSSLLSPSR-IPRGQAAPPPPLPVDSGPETTLR--G 105
P PAAP Q+ P G A+P P++ P+ P AA PPP P P T R G
Sbjct: 229 PKPAAPGTVIQTP-PFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP--PAPATLARPPG 285
Query: 106 SPSGPWRMAGVKKRP--------TGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMA 157
P+GP A P GA P+ A + G V+G A +
Sbjct: 286 HPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAA--APAPGVK 343
Query: 158 ASSPLSIL--PPTRRQGSRADTEAGAESAQDLSGSLRGASREAAA 200
A SP ++ P Q A A ++ + +++GA AA
Sbjct: 344 AESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAA 388
Score = 35.4 bits (80), Expect = 0.036
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 37/148 (25%)
Query: 50 APAAPPLGRQSR-----------NPARGL--ASPSTPSSLLSPSRIPRGQAAPPPPLP-- 94
AP PP GR +P R L A P+ P++ L P P G A P+P
Sbjct: 86 APEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPP--PEGSAGSCAPVPAA 143
Query: 95 --VDSGPETTLRGSPSGPWRMAG-----VKKRP---------TGAGPSTATSQGSRCSVA 138
V +GPE +P+GP + AG + P G GP G+ ++
Sbjct: 144 AAVAAGPEP----APAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLN 199
Query: 139 GTASRNVAERKWTRCLSMAASSPLSILP 166
G+A+ + +S+ + P ++LP
Sbjct: 200 GSAALLNSHHAAAPAVSLVNNGPAALLP 227
Score = 34.7 bits (78), Expect = 0.061
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 48 SPAPAA-PPLGRQSR-NPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPV-DSGPETTLR 104
+PAPAA P G + P A+P+ SP R+ QAAPP + SGP +T
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV--QAAPPAAQTLAASGPASTAA 371
Query: 105 GSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSI 164
GP + P+ T G AG +++++ + A+ ++
Sbjct: 372 SMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTV 431
Query: 165 LPP 167
L P
Sbjct: 432 LAP 434
Score = 31.6 bits (70), Expect = 0.51
Identities = 46/175 (26%), Positives = 63/175 (36%), Gaps = 25/175 (14%)
Query: 48 SPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAP--PPPLPVDSGPETTLRG 105
+P P P +R P P+ ++ P+ G +A P P P GP + G
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP-AGVSG 327
Query: 106 SPSGPWRMA-----GVK----KRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSM 156
P GP A GVK KR A P A + + + AS + +
Sbjct: 328 QP-GPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGP-----TMQG 381
Query: 157 AASSPLSILPPTRRQGSRADTEAGAESAQDLSGSLRGASREAAAELHGKCSPLTP 211
A SP ++ PP G+ GA A S SR A G + LTP
Sbjct: 382 ALPSPAAVPPPA--PGTPTGLPKGAAGAVTQS-----LSRTPTATTSGIRATLTP 429
Score = 31.2 bits (69), Expect = 0.67
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 35 RPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLS-----PSRIPRGQAAP 89
RP P + C+ PA AA G + PA G A P+ P++L + P P P
Sbjct: 127 RPPPEGSAGSCAPVPAAAAVAAGPEPA-PA-GPAKPAGPAALAARAGPGPGPGPGPGPGP 184
Query: 90 PPPLPVDSGPETTLRGS 106
P P G TL GS
Sbjct: 185 GPGKPAGPGAAQTLNGS 201
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 47 RSPAPAAPPLGRQ---SRNPARGLASPSTPSSL----LSPSRIPRGQ---AAPPPPLPVD 96
R P PAAPP+ + S +P+ ++ PS L +SPS++P A PPPP P
Sbjct: 91 RGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPAS 150
Query: 97 SGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGS 133
P+ +P P A T A P S GS
Sbjct: 151 VSPQAEPVWTPPAP---APAAPPSTPAAPKRRGSSGS 184
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 47 RSPAPAAPPLGRQ---SRNPARGLASPSTPSSL----LSPSRIPRGQ---AAPPPPLPVD 96
R P PAAPP+ + S +P+ ++ PS L +SPS++P A PPPP P
Sbjct: 91 RGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPAS 150
Query: 97 SGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGS 133
P+ +P P A T A P S GS
Sbjct: 151 VSPQAEPVWTPPAP---APAAPPSTPAAPKRRGSSGS 184
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 47 RSPAPAAPPLGRQ---SRNPARGLASPSTPSSL----LSPSRIPRGQ---AAPPPPLPVD 96
R P PAAPP+ + S +P+ ++ PS L +SPS++P A PPPP P
Sbjct: 91 RGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPAS 150
Query: 97 SGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGS 133
P+ +P P A T A P S GS
Sbjct: 151 VSPQAEPVWTPPAP---APAAPPSTPAAPKRRGSSGS 184
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
+RSPAP A G+ R P PS P P+ P A PP P PE+ L
Sbjct: 95 TRSPAPLARRPGKPPRRPKGAAGHPSAP-----PAAAPAAPAQPPAP-----RPESQLSD 144
Query: 106 SPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTR 152
P W +++P G G S ++ + G A A R+ R
Sbjct: 145 RPQS-W-----EQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPR 185
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
+RSPAP A G+ R P PS P P+ P A PP P PE+ L
Sbjct: 95 TRSPAPLARRPGKPPRRPKGAAGHPSAP-----PAAAPAAPAQPPAP-----RPESQLSD 144
Query: 106 SPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTR 152
P W +++P G G S ++ + G A A R+ R
Sbjct: 145 RPQS-W-----EQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPR 185
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 40.8 bits (94), Expect = 8e-04
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 60 SRNPARGLASPSTPSSLLSPSR---IPRGQAAPPP----------PLPVDSGPETTLRGS 106
SR+ +R +S +PS SP R +G+ APPP P P + P+ T +
Sbjct: 595 SRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSVKKPAPPPAPPQATKTTA 654
Query: 107 P------SGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASS 160
P G R A K+RP P T GS +G+ S +R LS+++ S
Sbjct: 655 PVPEPTKPGDPREARRKERPARTPPRRRTLSGSG---SGSGSSYSGSSSRSRSLSVSSVS 711
Query: 161 PLSILPPTRRQGSRADTEAGAESAQDLSGSLRGASREAAA 200
+S + D+E + DL+ + AS + A
Sbjct: 712 SVSSATSSSSSAHSVDSE---DMYADLASPVSSASSRSPA 748
Score = 38.9 bits (89), Expect = 0.003
Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 15/150 (10%)
Query: 59 QSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKK 118
+ R +G P +P PSR QA PP +GP+ PWR + K
Sbjct: 474 KEREKEKGKPKPRSPQP---PSR----QAEPPKKEAATTGPQVKRADEWKDPWRRSKSPK 526
Query: 119 RPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTE 178
+ G S + ++ R + A +AS + + R +R S + S + R SR+ +
Sbjct: 527 KKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSG-------SSRSRSRSSSY 579
Query: 179 AGAESAQDLSGSLRGASREAAAELHGKCSP 208
+ S S G SR + SP
Sbjct: 580 SSYSSRSSRHSSFSG-SRSRSRSFSSSPSP 608
Score = 31.6 bits (70), Expect = 0.51
Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 13/166 (7%)
Query: 51 PAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGP 110
PA PP Q+ + P+ P R R PP TL GS SG
Sbjct: 640 PAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPARTPP--------RRRTLSGSGSGS 691
Query: 111 W-RMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLS--MAASSPLSILPP 167
+G R S+ +S S S + +A +E + S +ASS
Sbjct: 692 GSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADLASPVSSASSRSPAPAQ 751
Query: 168 TRRQGSRADTEAGAESAQDLSGSLRGASREAAAELHGKCS--PLTP 211
TR++ ++ E G + + S + A GK S P TP
Sbjct: 752 TRKEKGKSKKEDGVKEEKRKRDSSTQPPKSAKPPAGGKSSQQPSTP 797
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 55 PLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPV-----DSGPETTLRGSPSG 109
P R PA A+PSTP+ P +P+ APP P P ++ PE + P+
Sbjct: 500 PDKRLKAEPAAPPAAPSTPAP---PPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQ 556
Query: 110 PWRMAGVKKRPT---GAGPSTATSQGS 133
GV PT G G +++TS GS
Sbjct: 557 STPTPGVAAAPTLVSGGGSTSSTSSGS 583
Score = 32.0 bits (71), Expect = 0.39
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 49 PAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPL-PVDSGPETTL--RG 105
P P APP +R ARG TP + PSR RG PPP + P S P +L +
Sbjct: 1140 PPPGAPPSPAPARFTARG-GRVFTPRGV--PSRRGRGGGRPPPQVCPGWSPPAKSLAPKK 1196
Query: 106 SPSGP 110
P+GP
Sbjct: 1197 PPTGP 1201
Score = 28.9 bits (63), Expect = 3.3
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 54 PPLGRQ-SRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWR 112
PP GR S +R A+PST S + R+ Q A PP LR P PW
Sbjct: 2077 PPTGRSFSGLNSRLKATPSTYSGVFRTQRVDLYQQASPP---------DALRWIPK-PWE 2126
Query: 113 MAGVKKRPTGAGPS-TATSQGSR 134
G P GPS A GSR
Sbjct: 2127 RTG---PPPREGPSRRAEEPGSR 2146
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 36 PHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPV 95
P P S + AP GRQSR A G +P SPS P+ QA PP
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS--PQRQAGPPQATRQ 566
Query: 96 DS----GPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQ 131
S P P G R +K P AGP+ SQ
Sbjct: 567 TSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 32/139 (23%)
Query: 47 RSPAPAAPPLGRQ-SRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
++P+P A PLGRQ S+ PA A P P+G P P P GP R
Sbjct: 435 QTPSPGALPLGRQTSQQPAGPPAQQRPP---------PQGGPPQPGPGPQRQGPPLQQRP 485
Query: 106 SPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSIL 165
P G ++G+ GP + R +A + A S AA
Sbjct: 486 PPQGQQHLSGL-------GPPAGSPLPQRLPSPTSAPQQPA--------SQAA------- 523
Query: 166 PPTRRQGSRADTEAGAESA 184
PPT+ QG ++ AG A
Sbjct: 524 PPTQGQGRQSRPVAGGPGA 542
Score = 35.8 bits (81), Expect = 0.027
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 23/157 (14%)
Query: 38 PLSTLSLCSRSPAP----AAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPL 93
P +T PAP APP G+Q + P P P P+R QA+ P+
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPGGQQRQGP------PQKPPGPAGPTR----QASQAGPV 610
Query: 94 PVDSGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRC 153
P +GP TT + PSGP AG K PS + + G + +
Sbjct: 611 P-RTGPPTTQQPRPSGP-GPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNK------ 662
Query: 154 LSMAASSPLSILPPTRRQGSRADTEAGAESAQDLSGS 190
S + ++ ++ P + S + E AE+ + L S
Sbjct: 663 -SQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKS 698
Score = 30.4 bits (67), Expect = 1.1
Identities = 43/168 (25%), Positives = 58/168 (34%), Gaps = 33/168 (19%)
Query: 35 RPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSR---------IPRG 85
RP P L P PA PL ++ +P ++P P+S +P + G
Sbjct: 484 RPPPQGQQHLSGLGP-PAGSPLPQRLPSPT---SAPQQPASQAAPPTQGQGRQSRPVAGG 539
Query: 86 QAAPPPPLPVDS--------GPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSV 137
APP P S P+ T + S SGP + +GA P QG
Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATRQTSVSGP-----APPKASGAPPGGQQRQGPPQKP 594
Query: 138 AGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAGAESAQ 185
G A TR S A P + P T++ AG Q
Sbjct: 595 PGPAGP-------TRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 36 PHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPV 95
P P S + AP GRQSR A G +P SPS P+ QA PP
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS--PQRQAGPPQATRQ 566
Query: 96 DS----GPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQ 131
S P P G R +K P AGP+ SQ
Sbjct: 567 TSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 32/139 (23%)
Query: 47 RSPAPAAPPLGRQ-SRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
++P+P A PLGRQ S+ PA A P P+G P P P GP R
Sbjct: 435 QTPSPGALPLGRQTSQQPAGPPAQQRPP---------PQGGPPQPGPGPQRQGPPLQQRP 485
Query: 106 SPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSIL 165
P G ++G+ GP + R +A + A S AA
Sbjct: 486 PPQGQQHLSGL-------GPPAGSPLPQRLPSPTSAPQQPA--------SQAA------- 523
Query: 166 PPTRRQGSRADTEAGAESA 184
PPT+ QG ++ AG A
Sbjct: 524 PPTQGQGRQSRPVAGGPGA 542
Score = 35.0 bits (79), Expect = 0.047
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 38 PLSTLSLCSRSPAP----AAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPL 93
P +T PAP APP G+Q + P P P P+R QA+ P+
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPGGQQRQGP------PQKPPGPAGPTR----QASQAGPV 610
Query: 94 PVDSGPETTLRGSPSGP 110
P +GP TT + PSGP
Sbjct: 611 P-RTGPPTTQQPRPSGP 626
Score = 30.4 bits (67), Expect = 1.1
Identities = 43/168 (25%), Positives = 58/168 (34%), Gaps = 33/168 (19%)
Query: 35 RPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSR---------IPRG 85
RP P L P PA PL ++ +P ++P P+S +P + G
Sbjct: 484 RPPPQGQQHLSGLGP-PAGSPLPQRLPSPT---SAPQQPASQAAPPTQGQGRQSRPVAGG 539
Query: 86 QAAPPPPLPVDS--------GPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSV 137
APP P S P+ T + S SGP + +GA P QG
Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATRQTSVSGP-----APPKASGAPPGGQQRQGPPQKP 594
Query: 138 AGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAGAESAQ 185
G A TR S A P + P T++ AG Q
Sbjct: 595 PGPAGP-------TRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 40.4 bits (93), Expect = 0.001
Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 3 SRPHRVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCS----RSPAPAAPPLGR 58
S P R R + P KR + SS P P+ + S +SP+P+ P+ R
Sbjct: 664 SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723
Query: 59 QSRNP----ARGLASPS-------TPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSP 107
SR P + ASPS + S +S S P + P PP PV S SP
Sbjct: 724 VSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQS-------QSP 776
Query: 108 SGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERK 149
S W A K+ PS + + S G + ++K
Sbjct: 777 STNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKK 818
Score = 37.4 bits (85), Expect = 0.009
Identities = 47/182 (25%), Positives = 67/182 (36%), Gaps = 23/182 (12%)
Query: 16 APMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSS 75
+P KR R S P P RSP+PA PP R++ P +PS P
Sbjct: 532 SPRKRQKETSPRGRRRRSPSPPPTRR----RRSPSPAPPPRRRRTPTPPPRRRTPSPPPR 587
Query: 76 LLSPS------RIPRGQAAPPPP--LPVDSGPETTLRGSPSGPWR-----MAGVKKRPTG 122
SPS I R + PPP P R SPS P + K+R +
Sbjct: 588 RRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSP 647
Query: 123 AGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSP------LSILPPTRRQGSRAD 176
+ S S+ + SR+ E + + + SP S PP R+G+ +
Sbjct: 648 VTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSS 707
Query: 177 TE 178
+
Sbjct: 708 PQ 709
Score = 31.2 bits (69), Expect = 0.67
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 25/161 (15%)
Query: 39 LSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRI-PRGQAAPPPPLPVDS 97
LS S S S +PP + P + +SP + LSPS PR + P PP +
Sbjct: 355 LSGSSSSSSSSRSRSPP-----KKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPP----A 405
Query: 98 GPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASR------------NV 145
P R SP+ P + +K P + G GT R +
Sbjct: 406 TPPPKTRHSPT-PQQSNRTRKSRVSVSP--GRTSGKVTKHKGTEKRESPSPAPKPRKVEL 462
Query: 146 AERKWTRCLSMAASSPLSILPPTRRQGSRADTEAGAESAQD 186
+E + + MAA+ + RRQ ++ +++G+ S+ +
Sbjct: 463 SESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSE 503
Score = 28.9 bits (63), Expect = 3.3
Identities = 33/128 (25%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 34 SRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPL 93
SR S SRSP+ P +SR+ + +P SP R + PPPP
Sbjct: 278 SRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPR 337
Query: 94 PVDSGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRC 153
S P R S+++S SR R + + TR
Sbjct: 338 HRRS----------RSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRR 387
Query: 154 LSMAASSP 161
LS +AS P
Sbjct: 388 LSPSASPP 395
Score = 28.5 bits (62), Expect = 4.4
Identities = 46/202 (22%), Positives = 68/202 (33%), Gaps = 21/202 (10%)
Query: 7 RVKRLKLAVAPMKRSWGRGLAQHRDYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARG 66
R R + + +P R + + R S P S SPAP + P+
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 67 LASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMAGVKKRPTGAGPS 126
+ PS + S S I + P P P + PE + K RP S
Sbjct: 230 VKEPSVQEAT-STSDILKVPKPEPIPEPKEPSPEKNSKKEKEKE------KTRPRSRSRS 282
Query: 127 TATSQGSRCSVAGTASRNVAERKWTRCLS-------------MAASSPLSILPPTRRQGS 173
+ S+ S + T R R +R S + P + PP R + S
Sbjct: 283 KSRSRTRSRSPSHTRPRR-RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRS 341
Query: 174 RADTEAGAESAQDLSGSLRGAS 195
R+ S+ LSGS +S
Sbjct: 342 RSPVRRRRRSSASLSGSSSSSS 363
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
S+ P PA PP + P P P S PS+ P G PPP P + P G
Sbjct: 471 SQLPGPAKPP----PQQPGPAKPPPQQPGSAKPPSQQP-GSTKPPPQQPGPAKPSPQQPG 525
Query: 106 SPSGPWRMAGVKKRPTGAGPSTA--TSQGSRCSVAGTAS 142
S P + G K P+ PS A ++Q S V+ T S
Sbjct: 526 STKPPSQQPGSAK-PSAQQPSPAKPSAQQSTKPVSQTGS 563
Score = 32.7 bits (73), Expect = 0.23
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 31 DYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSR----IPRGQ 86
D + P P S + S P P++ G++ +P + P + +SP +P+G
Sbjct: 817 DSKAIPRPASDSKIISH-PGPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGS 875
Query: 87 AAPPPPLPVDSGPETTLRGSP 107
PP P P T + SP
Sbjct: 876 PTPPGPRPTAGQTVPTPQQSP 896
Score = 31.2 bits (69), Expect = 0.67
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 33 SSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPP 92
+ +P P + +P P A G QS PA+ TP P +IP QA P
Sbjct: 402 AQQPGPAKPPTQQVGTPKPLAQQPGLQS--PAKAPGPTKTPVQQPGPGKIPAQQAGPGKT 459
Query: 93 LPVDSG---PETTLRGSPSGPWRMAGVKKRP 120
+G P + L G P + G K P
Sbjct: 460 SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Score = 30.4 bits (67), Expect = 1.1
Identities = 34/150 (22%), Positives = 49/150 (32%), Gaps = 20/150 (13%)
Query: 2 VSRPHRVKRLKLAVAPMKRSWGRGLAQHRDY----SSRPHPLSTLSLCSRSPAPAAPPL- 56
+ P + + A P++R R + D S +P S + P P PP
Sbjct: 258 IQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQ 317
Query: 57 --GRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMA 114
G + P P+ PS L P G PP P + P G P +
Sbjct: 318 QPGHEKSQPGPA-KPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQT 376
Query: 115 GVKK------------RPTGAGPSTATSQG 132
G +K +P G G + A G
Sbjct: 377 GSEKPSSEQPGPKALAQPPGVGKTPAQQPG 406
Score = 30.4 bits (67), Expect = 1.1
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 49 PAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIP---RGQAAPPPPLPVDSGPETTLRG 105
PA A P + A+ PS L P++ P G A PPP P + P + G
Sbjct: 450 PAQQAGP----GKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPG 505
Query: 106 SPSGPWRMAGVKK----RPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSP 161
S P + G K +P P + ++ S + + ++ T+ +S S
Sbjct: 506 STKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGK 565
Query: 162 LSILPPT 168
+ PPT
Sbjct: 566 -PLQPPT 571
Score = 28.1 bits (61), Expect = 5.7
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 51 PAAPPLGRQ-SRNPA------RGLASP----STPSSLLSPSRIPRGQAAPPPPLPVDSGP 99
PA PP + S P+ + LA P TP+ P++ P Q P PL G
Sbjct: 368 PAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGL 427
Query: 100 ETTLR--GSPSGPWRMAGVKKRPT-GAGPSTATSQ 131
++ + G P + G K P AGP ++Q
Sbjct: 428 QSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQ 462
Score = 28.1 bits (61), Expect = 5.7
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 33/190 (17%)
Query: 32 YSSRPHPLSTLSLCS---RSPAPAAPPLGRQSRNPARGLASPSTPSSL-----LSPSRIP 83
YSS ST+ L +SP P+ S P + L S P +SP ++
Sbjct: 3600 YSSHLRADSTVQLAPSPPKSPKVLYSPISPLS--PGKALESAFVPYEKPLPDDISPQKVL 3657
Query: 84 RGQAAPPPPLPVDSGPETT--LRGSPSGPWRMAGVKKRPTGA-----------GPSTATS 130
A PP + P+T ++ S S P ++ + A G T TS
Sbjct: 3658 HPDMAKVPP----ASPKTAKMMQRSMSDPKPLSPTADESSRAPFQYTEGYTTKGSQTMTS 3713
Query: 131 QGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPP-TRRQGSRADTEAGAESAQDLSG 189
G++ V T E +S S S + +RR+ R +T A A+ QD+
Sbjct: 3714 SGAQKKVKRTLPNPPPEE-----ISTGTQSTFSTMGTVSRRRICRTNTMARAKILQDIDR 3768
Query: 190 SLRGASREAA 199
L RE+A
Sbjct: 3769 ELDLVERESA 3778
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
S+ P PA PP + P P P S PS+ P G PPP P + P G
Sbjct: 471 SQLPGPAKPP----PQQPGPAKPPPQQPGSAKPPSQQP-GSTKPPPQQPGPAKPSPQQPG 525
Query: 106 SPSGPWRMAGVKKRPTGAGPSTA--TSQGSRCSVAGTAS 142
S P + G K P+ PS A ++Q S V+ T S
Sbjct: 526 STKPPSQQPGSAK-PSAQQPSPAKPSAQQSTKPVSQTGS 563
Score = 32.7 bits (73), Expect = 0.23
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 31 DYSSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSR----IPRGQ 86
D + P P S + S P P++ G++ +P + P + +SP +P+G
Sbjct: 817 DSKAIPRPASDSKIISH-PGPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGS 875
Query: 87 AAPPPPLPVDSGPETTLRGSP 107
PP P P T + SP
Sbjct: 876 PTPPGPRPTAGQTVPTPQQSP 896
Score = 31.2 bits (69), Expect = 0.67
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 33 SSRPHPLSTLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPP 92
+ +P P + +P P A G QS PA+ TP P +IP QA P
Sbjct: 402 AQQPGPAKPPTQQVGTPKPLAQQPGLQS--PAKAPGPTKTPVQQPGPGKIPAQQAGPGKT 459
Query: 93 LPVDSG---PETTLRGSPSGPWRMAGVKKRP 120
+G P + L G P + G K P
Sbjct: 460 SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Score = 30.4 bits (67), Expect = 1.1
Identities = 34/150 (22%), Positives = 49/150 (32%), Gaps = 20/150 (13%)
Query: 2 VSRPHRVKRLKLAVAPMKRSWGRGLAQHRDY----SSRPHPLSTLSLCSRSPAPAAPPL- 56
+ P + + A P++R R + D S +P S + P P PP
Sbjct: 258 IQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQ 317
Query: 57 --GRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRGSPSGPWRMA 114
G + P P+ PS L P G PP P + P G P +
Sbjct: 318 QPGHEKSQPGPA-KPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQT 376
Query: 115 GVKK------------RPTGAGPSTATSQG 132
G +K +P G G + A G
Sbjct: 377 GSEKPSSEQPGPKALAQPPGVGKTPAQQPG 406
Score = 30.4 bits (67), Expect = 1.1
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 49 PAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIP---RGQAAPPPPLPVDSGPETTLRG 105
PA A P + A+ PS L P++ P G A PPP P + P + G
Sbjct: 450 PAQQAGP----GKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPG 505
Query: 106 SPSGPWRMAGVKK----RPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSP 161
S P + G K +P P + ++ S + + ++ T+ +S S
Sbjct: 506 STKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGK 565
Query: 162 LSILPPT 168
+ PPT
Sbjct: 566 -PLQPPT 571
Score = 28.1 bits (61), Expect = 5.7
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 51 PAAPPLGRQ-SRNPA------RGLASP----STPSSLLSPSRIPRGQAAPPPPLPVDSGP 99
PA PP + S P+ + LA P TP+ P++ P Q P PL G
Sbjct: 368 PAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGL 427
Query: 100 ETTLR--GSPSGPWRMAGVKKRPT-GAGPSTATSQ 131
++ + G P + G K P AGP ++Q
Sbjct: 428 QSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQ 462
Score = 28.1 bits (61), Expect = 5.7
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 33/190 (17%)
Query: 32 YSSRPHPLSTLSLCS---RSPAPAAPPLGRQSRNPARGLASPSTPSSL-----LSPSRIP 83
YSS ST+ L +SP P+ S P + L S P +SP ++
Sbjct: 3600 YSSHLRADSTVQLAPSPPKSPKVLYSPISPLS--PGKALESAFVPYEKPLPDDISPQKVL 3657
Query: 84 RGQAAPPPPLPVDSGPETT--LRGSPSGPWRMAGVKKRPTGA-----------GPSTATS 130
A PP + P+T ++ S S P ++ + A G T TS
Sbjct: 3658 HPDMAKVPP----ASPKTAKMMQRSMSDPKPLSPTADESSRAPFQYTEGYTTKGSQTMTS 3713
Query: 131 QGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPP-TRRQGSRADTEAGAESAQDLSG 189
G++ V T E +S S S + +RR+ R +T A A+ QD+
Sbjct: 3714 SGAQKKVKRTLPNPPPEE-----ISTGTQSTFSTMGTVSRRRICRTNTMARAKILQDIDR 3768
Query: 190 SLRGASREAA 199
L RE+A
Sbjct: 3769 ELDLVERESA 3778
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 39.7 bits (91), Expect = 0.002
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 40 STLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGP 99
ST SL +R P P A P G SR S + S SP+R P +A+P P S
Sbjct: 399 STASL-TRKP-PRASPTGMLSRT------SITKMDSTASPTRTPP-RASPTGTPPRASPT 449
Query: 100 ETTLRGSPSGPWRMAGVKKRPTGA----GPSTATSQG--SRCSVAGTASR-NVAERKWTR 152
T R SP+G A P+ A PSTA+ G SR S+ T SR ++ + + T
Sbjct: 450 GTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTA 509
Query: 153 CLSMAASSPLSILPPTRRQGSRADTEAGAESAQDLSGSLRGASREAAAELHGKCSPLTP 211
++ S P+ + + + A A + + R SR + + S TP
Sbjct: 510 SITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTP 568
Score = 38.1 bits (87), Expect = 0.005
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 44 LCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTL 103
L +R P P+A P G SR G+ S + + + S + I R PP P ++ P +
Sbjct: 581 LLTRMP-PSASPTGMPSRTSPTGMPSSALLTKMDSTASITR---TPPRASPTETPPRASP 636
Query: 104 RGSPSGPWRMAGVKKRPTGAGP-STATSQGSRCSVAGTASR 143
G+P + PTG P ++ T R S GT SR
Sbjct: 637 TGTPP--------RASPTGTPPRASPTGTPPRASPTGTPSR 669
Score = 35.4 bits (80), Expect = 0.036
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 40 STLSLCSRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQA------APPPPL 93
ST SL +R+P P A P G SR G+ S ++ + + S + I R + PP
Sbjct: 171 STASL-TRTP-PRASPTGMPSRTSPTGMPSTASLTKMDSTASITRTLSRASPTGTPPRAS 228
Query: 94 PVDSGPETTL--------------RGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAG 139
P S P +L R SP+G + K + A + S+ S S G
Sbjct: 229 PTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTKMDSTASITRTPSRPSTASPTG 288
Query: 140 TASR 143
T SR
Sbjct: 289 TPSR 292
Score = 34.3 bits (77), Expect = 0.079
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 11/165 (6%)
Query: 40 STLSLCSRSPAPAAPPLGRQSRNPARG--LASPSTPSSLLSPSRI-PRGQAAPPPPLPVD 96
S + S + PP +R P+R PST S +PSR P G + +
Sbjct: 321 SLTKMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLS 380
Query: 97 SGPETT---LRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRC 153
S T R SP+G A + ++P A P+ S+ S + TAS + +
Sbjct: 381 STASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPT 440
Query: 154 LSMAASSPL---SILPPTRRQGSRADTEAGAESAQDLSGSLRGAS 195
+ +SP S PT Q + + T G+ S +GS AS
Sbjct: 441 GTPPRASPTGTPSRASPTGTQSTASPT--GSPSTASPTGSPSTAS 483
Score = 32.0 bits (71), Expect = 0.39
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 40 STLSLCSRSPAPAAPPLGRQSRNPARGLAS--PSTPSSLLSPSRIPRGQAAPPPPLPVDS 97
ST SL +RSP+ A+ + P+R S PST ++L PSR + P L +
Sbjct: 117 STASL-TRSPSRAS-----LTTTPSRASLSMTPSTAAALTMPSRASLTRTPPRASLTMTP 170
Query: 98 GPETTLRGSPSGPWRMAGVKKRPTGAGPSTA--TSQGSRCSVAGTASRNVAERKWTRCLS 155
+ R P + PTG PSTA T S S+ T SR A T +
Sbjct: 171 STASLTRTPPRASPTGMPSRTSPTGM-PSTASLTKMDSTASITRTLSR--ASPTGTPPRA 227
Query: 156 MAASSP----LSILPPT 168
SP LS++P T
Sbjct: 228 SPTGSPPRASLSMMPST 244
Score = 30.4 bits (67), Expect = 1.1
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 34 SRPHPLSTLSLCSRSPAPAAPPLGRQ-SRNPARGLASPSTPSSLLSPSRIPRGQAAPPPP 92
S P T S S S P+ L R R G+ S ++ + + S + I R PP
Sbjct: 282 STASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISR----TPPR 337
Query: 93 LPVDSGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRCSVAGTAS 142
+ P R SP+G A P+ A P+ + S S ++ TAS
Sbjct: 338 ASITRTPS---RASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTAS 384
Score = 29.3 bits (64), Expect = 2.6
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 39 LSTLSLCSRSPAPAA----PPLGRQSRNPARG--LASPSTPSSLLSPSRI---------- 82
+ + SL +R+P+ A+ PP ++R R + PST S SPSR
Sbjct: 79 MQSSSLLTRTPSMASLKRMPPRASRTRTLPRASLMRRPSTASLTRSPSRASLTTTPSRAS 138
Query: 83 ----PRGQAAPPPPLPVD---SGPETTLRGSPSGPWRMAGVKKRPTGAGPSTATSQGSRC 135
P AA P + P +L +PS A + + P A P+ S+ S
Sbjct: 139 LSMTPSTAAALTMPSRASLTRTPPRASLTMTPS----TASLTRTPPRASPTGMPSRTSPT 194
Query: 136 SVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGS 173
+ TAS + + +++ +SP P GS
Sbjct: 195 GMPSTASLTKMDSTASITRTLSRASPTGTPPRASPTGS 232
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 39.7 bits (91), Expect = 0.002
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 46 SRSPAP-AAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLR 104
S SP P A P Q R S P S L P ++PR +PPPP P P +
Sbjct: 176 SSSPEPWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQ 235
Query: 105 GSPSGPWRMAGVKKRPT--GAGPS-------TATSQGSRCSVAGTASRNVAERKWTRCLS 155
+PS P + PT + PS T+ R +AGT + +A+ LS
Sbjct: 236 VAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIR-ELAGTLRQGLAK------LS 288
Query: 156 MAASSPLSILPPT 168
A S+ L +LP T
Sbjct: 289 EALSALLPLLPGT 301
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 43 SLCSRSPAPAAPPLGRQSRNPARGLA-SPSTPSSLLSPSRIPRGQAAPPPP-LPVDSGPE 100
S+ AP+ P QS +PA G A +P TP+ P P+ A PPPP LP + P
Sbjct: 717 SIAREPSAPSIPTPAYQS-SPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPS 775
Query: 101 TTLRGSPSGPWRMAGVKKRPTGAGP 125
T SP G A + G+ P
Sbjct: 776 AT-APSPVGAGTAAPAPSQTPGSAP 799
Score = 28.1 bits (61), Expect = 5.7
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 48 SPAPAA-PPLGRQ--SRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLR 104
+PAP PP Q +R P L + PS+ +PS + G AAP P S P +
Sbjct: 746 TPAPRTMPPTKPQPPARPPPPVLPANRAPSAT-APSPVGAGTAAPAPSQTPGSAPPPQAQ 804
Query: 105 GSP 107
G P
Sbjct: 805 GPP 807
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 43 SLCSRSPAPAAPPLGRQSRNPARGLA-SPSTPSSLLSPSRIPRGQAAPPPP-LPVDSGPE 100
S+ AP+ P QS +PA G A +P TP+ P P+ A PPPP LP + P
Sbjct: 712 SIAREPSAPSIPTPAYQS-SPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPS 770
Query: 101 TTLRGSPSGPWRMAGVKKRPTGAGP 125
T SP G A + G+ P
Sbjct: 771 AT-APSPVGAGTAAPAPSQTPGSAP 794
Score = 28.1 bits (61), Expect = 5.7
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 48 SPAPAA-PPLGRQ--SRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLR 104
+PAP PP Q +R P L + PS+ +PS + G AAP P S P +
Sbjct: 741 TPAPRTMPPTKPQPPARPPPPVLPANRAPSAT-APSPVGAGTAAPAPSQTPGSAPPPQAQ 799
Query: 105 GSP 107
G P
Sbjct: 800 GPP 802
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 54 PPLGRQSRNPARGLASPSTPSSLLSP--SRIPRGQAAPPPPLPVDSGPETTLRGSPSGPW 111
PP R R P L SPS ++ L P R P A P PV GP LR P PW
Sbjct: 19 PPAAR-GRLPGETL-SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPW 76
Query: 112 RMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPT 168
R P GA + V G+ASR A RC ++ +S + P+
Sbjct: 77 RPG-----PLGA---PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS 125
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 54 PPLGRQSRNPARGLASPSTPSSLLSP--SRIPRGQAAPPPPLPVDSGPETTLRGSPSGPW 111
PP R R P L SPS ++ L P R P A P PV GP LR P PW
Sbjct: 19 PPAAR-GRLPGETL-SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPW 76
Query: 112 RMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPT 168
R P GA + V G+ASR A RC ++ +S + P+
Sbjct: 77 RPG-----PLGA---PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS 125
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 54 PPLGRQSRNPARGLASPSTPSSLLSP--SRIPRGQAAPPPPLPVDSGPETTLRGSPSGPW 111
PP R R P L SPS ++ L P R P A P PV GP LR P PW
Sbjct: 19 PPAAR-GRLPGETL-SPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPW 76
Query: 112 RMAGVKKRPTGAGPSTATSQGSRCSVAGTASRNVAERKWTRCLSMAASSPLSILPPT 168
R P GA + V G+ASR A RC ++ +S + P+
Sbjct: 77 RPG-----PLGA---PLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPS 125
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLA-SPSTPSSLLSPSRIPRGQAAPPPPLP---VDSGPET 101
S +PAPAA P SR P GL P P PS +A PPPP P D G +T
Sbjct: 901 SPAPAPAASPQPG-SRGPRDGLGPEPQEPPPGPPPSPAAAPEAVPPPPAPPSYSDKGVQT 959
Query: 102 TLRGSPS 108
+G+P+
Sbjct: 960 PSKGTPA 966
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 46 SRSPAPAAPPLGRQSRNPARGLASPSTPSSLLSPSRIPRGQAAPPPPLPVDSGPETTLRG 105
+R +P PP G SR PAR SP S R R +PP V P RG
Sbjct: 36 ARRSSPPPPPSGSSSRTPARRPRSP-------SGHRGRRASPSPPRGRRVSPSPPRARRG 88
Query: 106 SPSGPWRMAGVKKRPTGAGPSTATSQG 132
SPS P G + P G +S+G
Sbjct: 89 SPSPP---RGRRLFPPGPAGFRGSSRG 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,678,451
Number of Sequences: 37866
Number of extensions: 700183
Number of successful extensions: 7371
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 1008
Number of HSP's that attempted gapping in prelim test: 4951
Number of HSP's gapped (non-prelim): 2872
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.