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Search of human proteins with 239755571
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 540 e-154
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 509 e-145
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 331 3e-91
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 241 5e-64
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 114 9e-26
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 5e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 5e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 8e-08
gi|91208420 bassoon protein [Homo sapiens] 50 2e-06
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 50 2e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 3e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 49 4e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 48 8e-06
gi|11415052 retinoid X receptor, beta [Homo sapiens] 47 2e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 2e-05
gi|19913396 smoothelin isoform b [Homo sapiens] 47 2e-05
gi|19913394 smoothelin isoform c [Homo sapiens] 47 2e-05
gi|19913398 smoothelin isoform a [Homo sapiens] 47 2e-05
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 46 3e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 46 3e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 46 3e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 46 3e-05
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 46 3e-05
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 46 3e-05
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 46 4e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 46 4e-05
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 540 bits (1390), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MSTLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGV 60
MSTLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGV
Sbjct: 1 MSTLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGV 60
Query: 61 SAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGA 120
SAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGA
Sbjct: 61 SAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGA 120
Query: 121 GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPR 180
GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPR
Sbjct: 121 GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPR 180
Query: 181 PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARS 240
PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARS
Sbjct: 181 PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARS 240
Query: 241 DSSRRPPRRQLPLLGCVASTS 261
DSSRRPPRRQLPLLGCVASTS
Sbjct: 241 DSSRRPPRRQLPLLGCVASTS 261
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 509 bits (1311), Expect = e-145
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 15 GRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 74
GRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES
Sbjct: 118 GRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 177
Query: 75 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS 134
NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS
Sbjct: 178 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS 237
Query: 135 KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDG 194
KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDG
Sbjct: 238 KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDG 297
Query: 195 RGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLL 254
RGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLL
Sbjct: 298 RGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLL 357
Query: 255 GCVASTS 261
GCVASTS
Sbjct: 358 GCVASTS 364
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 331 bits (849), Expect = 3e-91
Identities = 170/193 (88%), Positives = 174/193 (90%), Gaps = 6/193 (3%)
Query: 54 RRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPG 113
RRPGPGVSAV A GQQRAPES ERPAEE PA MPSSAPRGPTEPA RRPSSADRPLAPG
Sbjct: 86 RRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPG 145
Query: 114 PSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP- 172
PSSSPGAGRAP AMASPSGSS+ATGKPRGRDG PRREEDDV PEEKRLRLLLE GSAQP
Sbjct: 146 PSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPE 205
Query: 173 --DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLV 230
+DGEDAPRPGRK+TGTQTGGDGRGVSD GAGV RGC+GRGVGAAGGSVAGPGLKLV
Sbjct: 206 DCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGV---RGCQGRGVGAAGGSVAGPGLKLV 262
Query: 231 TERQLRRARSDSS 243
ERQLRRARSDSS
Sbjct: 263 IERQLRRARSDSS 275
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 241 bits (615), Expect = 5e-64
Identities = 140/221 (63%), Positives = 151/221 (68%), Gaps = 22/221 (9%)
Query: 1 MSTLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGV 60
MSTLSGRPFS R + +G + +AG L G+ QR PGPG
Sbjct: 1 MSTLSGRPFSSSSLSRET----IGVQPGWGGEEVQGLARAG----LATGK-GQRPPGPGR 51
Query: 61 SAVGASGQQRAPESNERPAEEPT----------PAPMPSSAPRGPTEPALRRPSSADRPL 110
+ +R + ERPAE APMPSSAPRGPTEPALRRPSSA+RPL
Sbjct: 52 VRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPL 111
Query: 111 APGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
A PSSS GRAPGAMASPS SS+ATGKPRGRDGRPRREEDDV PEEKRLRLLLE GSA
Sbjct: 112 AQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGSA 171
Query: 171 QP---DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 208
QP +DGEDAPRPGR ETGTQTGGDGRGVSDAGAGVRGCR
Sbjct: 172 QPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCR 212
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 114 bits (285), Expect = 9e-26
Identities = 80/196 (40%), Positives = 94/196 (47%), Gaps = 29/196 (14%)
Query: 1 MSTLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGV 60
MSTLSGRPFS + GR A P ++ P G R + GP
Sbjct: 1 MSTLSGRPFSSLLLRQGDYRGATWLGRGGGAGPGQSGPGHGQGTATSWARTGESGAGPSP 60
Query: 61 SAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGA 120
+ +G+ A +R P +P RRP + R A
Sbjct: 61 AWRRCAGE--ASRGRQRARSGPPKSP--------------RRPDAQLR-----------A 93
Query: 121 GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPR 180
R A A + R DG PRREEDDV PEEKRLRLLLE GSAQP+DGEDAPR
Sbjct: 94 ARTQRARAQTPQLRREDA--RAGDGWPRREEDDVPPEEKRLRLLLEGGSAQPEDGEDAPR 151
Query: 181 PGRKETGTQTGGDGRG 196
PGR+ETGTQTGGDG+G
Sbjct: 152 PGREETGTQTGGDGKG 167
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 55.5 bits (132), Expect = 5e-08
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 28/199 (14%)
Query: 33 PERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAP 92
P A PQ +G+R R GV +G G++ AP + P ++ P +
Sbjct: 473 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532
Query: 93 RGPTEPALRRPSSAD--RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRRE 150
RGP+ A + ++ D RP PG + G PG A P G +G P G DGRP
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD-AGPQGKVGPSGAP-GEDGRP--- 587
Query: 151 EDDVTPEEKRLRLLLEEGSAQPDDGEDAPR----PGRKETGTQTGGDGRGVSDAGAGVRG 206
G P P PG K + G G G+RG
Sbjct: 588 -----------------GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 630
Query: 207 CRGCRGRGVGAAGGSVAGP 225
G G A AGP
Sbjct: 631 LPGKDGETGAAGPPGPAGP 649
Score = 47.4 bits (111), Expect = 1e-05
Identities = 60/210 (28%), Positives = 73/210 (34%), Gaps = 47/210 (22%)
Query: 48 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 107
+G R + P GA+G+ P SN P P P P+G + P A
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS-GPPGRAG 942
Query: 108 RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--------RGRDGRPRREEDDVTPEEK 159
P GP+ PG PG G S A G P RG G P + + P
Sbjct: 943 EPGLQGPAGPPGEKGEPG----DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-- 996
Query: 160 RLRLLLEEGSAQP----------DDGEDAP-----------RPGRKETGTQTGGDGRGVS 198
L S +P D G P PGR+ + G DG
Sbjct: 997 -----LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS---PGADGPPGR 1048
Query: 199 DAGAGVRGCRGCRGRGVGAAG--GSVAGPG 226
D AGV+G RG G VGA G G PG
Sbjct: 1049 DGAAGVKGDRGETG-AVGAPGAPGPPGSPG 1077
Score = 46.6 bits (109), Expect = 2e-05
Identities = 58/188 (30%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 57 GPGV-SAVGASGQQ-----RAPESNERPAEEP-TPAPMPSSAPRGPTEPALRRPSSADRP 109
GPG A GA G+ R PE + P EP TP S P G A P + P
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG---SPGPAG----ASGNPGTDGIP 416
Query: 110 LAPGPSSSPGAGRAPG--AMASPSGSSKATGK--PRGRDGRP-----RREEDDVTPEEKR 160
A G + +PG APG P G ATG P+G+ G P + E+
Sbjct: 417 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG-------- 468
Query: 161 LRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAG-AGVRGCRGCRG-RGVGAA 218
+G P + AP P +E G+ GV G G RG G RG G
Sbjct: 469 -----PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 523
Query: 219 GGSVAGPG 226
G PG
Sbjct: 524 AGPKGAPG 531
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/161 (32%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 6 GRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLG-QGRRAQRRPGPGVSAVG 64
G+P AG+P AG R P+ A G G +G R PG+ G
Sbjct: 249 GKPGDDGEAGKPGK-----AGERGPPGPQGARGFPGTPGLPGVKGHRGY----PGLD--G 297
Query: 65 ASGQQRAPE---SNERPAEEPTPAPM-PSSAP--RGPTEPALR--------RPSSADRPL 110
A G+ AP + P E +P PM P P RG T PA +P A P
Sbjct: 298 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357
Query: 111 APGPSSSPGAGRAPGAM--ASPSGSSKATGK--PRGRDGRP 147
GP+ PG APGA A P+G+ G PRG G P
Sbjct: 358 PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 398
Score = 43.1 bits (100), Expect = 2e-04
Identities = 72/244 (29%), Positives = 85/244 (34%), Gaps = 48/244 (19%)
Query: 5 SGRPFSPPWAGRPSGCNLVG----AGRRCRAWPERAWPQAGDSDCLG-QGRRAQRR---- 55
+G P P G P L G AG + + P A + G G QG R Q
Sbjct: 545 NGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 604
Query: 56 PGP-GVSA----VGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR-----PSS 105
PGP G + G G AP P ++ ++ P GP PA R P
Sbjct: 605 PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG---AAGPPGPAGPAGERGEQGAPGP 661
Query: 106 ADRPLAPGPSSSPGAGRAPGAMASPSGSSKATG--KPRGRDGRPRREEDDVTPEEKRLRL 163
+ PGP PG G PG P G + A G PRG G P
Sbjct: 662 SGFQGLPGPPGPPGEGGKPGDQGVP-GEAGAPGLVGPRGERGFPG--------------- 705
Query: 164 LLEEGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGS 221
E GS G PR PG T G G G G +G G GAAG
Sbjct: 706 --ERGSPGA-QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER-GAAG-- 759
Query: 222 VAGP 225
+AGP
Sbjct: 760 IAGP 763
Score = 42.0 bits (97), Expect = 5e-04
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 26/181 (14%)
Query: 64 GASGQQRAPESNERPAEEPTPA-PMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGR 122
G G++ AP R E TP P P P P P L +A +A G G G
Sbjct: 138 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ--MAGGFDEKAG-GA 194
Query: 123 APGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP---------- 172
G M P G G P G G P + P E E G + P
Sbjct: 195 QLGVMQGPMGPMGPRGPP-GPAGAPGPQGFQGNPGEPG-----EPGVSGPMGPRGPPGPP 248
Query: 173 ----DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPGL 227
DDGE A +PG+ G G G+ G +G RG G+ A G PG+
Sbjct: 249 GKPGDDGE-AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 307
Query: 228 K 228
K
Sbjct: 308 K 308
Score = 40.8 bits (94), Expect = 0.001
Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 63 VGASGQQRAP-ESNERPAEEPTPAPMPSSA--PRGPTEPALRRPSSADRPLAPGPSSSPG 119
VG G + AP + R P P P+ A +G P PGP+ S G
Sbjct: 770 VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-------------PGPAGSAG 816
Query: 120 AGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGED 177
A APG P G + G P G DG+P + + +K + G+ P
Sbjct: 817 ARGAPGERGETGPPGPAGFAGPP-GADGQPGAKGEQGEAGQKG-----DAGAPGPQGPSG 870
Query: 178 APRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-GVGAAGGSVAGPG 226
AP P + TG TG G + G G G GR G + G+ PG
Sbjct: 871 APGP-QGPTGV-TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 918
Score = 37.7 bits (86), Expect = 0.010
Identities = 59/248 (23%), Positives = 75/248 (30%), Gaps = 28/248 (11%)
Query: 6 GRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLG--QGRRAQRRPGPGVSAV 63
G P +P G P G G A + + LG QG P
Sbjct: 156 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 215
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGP-----TEPALRRPSSADRPLAPGPSSSP 118
GA G Q + P E PM P GP + +P A PGP +
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 275
Query: 119 GAGRAPG-----------------AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRL 161
G PG A G +G P G +G P P E+
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSP-GENGSPGPMGPRGLPGERGR 334
Query: 162 RLLLEEGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAA 218
A+ +DG+ P PG G G + AG G RG G +G
Sbjct: 335 TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 394
Query: 219 GGSVAGPG 226
G+ PG
Sbjct: 395 PGTPGSPG 402
Score = 35.4 bits (80), Expect = 0.050
Identities = 43/155 (27%), Positives = 53/155 (34%), Gaps = 27/155 (17%)
Query: 6 GRPFSPPWAGRPSGCNLVGA-GRRCRAWPERAWPQAGDSDCLG----QGRRAQRRPG--P 58
G P +P G P G G R A + +G + G QG R + P
Sbjct: 1065 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1124
Query: 59 GVSAV----GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGP 114
G + G +G Q P ++ P S PRGP P GP
Sbjct: 1125 GERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-------------GP 1171
Query: 115 SSSPGAGRAPGAMA--SPSGSSKATGKPRGRDGRP 147
S GA PG + P G S TG P G G P
Sbjct: 1172 SGKDGANGIPGPIGPPGPRGRSGETG-PAGPPGNP 1205
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 55.5 bits (132), Expect = 5e-08
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 28/199 (14%)
Query: 33 PERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAP 92
P A PQ +G+R R GV +G G++ AP + P ++ P +
Sbjct: 404 PGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 463
Query: 93 RGPTEPALRRPSSAD--RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRRE 150
RGP+ A + ++ D RP PG + G PG A P G +G P G DGRP
Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD-AGPQGKVGPSGAP-GEDGRP--- 518
Query: 151 EDDVTPEEKRLRLLLEEGSAQPDDGEDAPR----PGRKETGTQTGGDGRGVSDAGAGVRG 206
G P P PG K + G G G+RG
Sbjct: 519 -----------------GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG 561
Query: 207 CRGCRGRGVGAAGGSVAGP 225
G G A AGP
Sbjct: 562 LPGKDGETGAAGPPGPAGP 580
Score = 47.4 bits (111), Expect = 1e-05
Identities = 60/210 (28%), Positives = 73/210 (34%), Gaps = 47/210 (22%)
Query: 48 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 107
+G R + P GA+G+ P SN P P P P+G + P A
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDS-GPPGRAG 873
Query: 108 RPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--------RGRDGRPRREEDDVTPEEK 159
P GP+ PG PG G S A G P RG G P + + P
Sbjct: 874 EPGLQGPAGPPGEKGEPG----DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-- 927
Query: 160 RLRLLLEEGSAQP----------DDGEDAP-----------RPGRKETGTQTGGDGRGVS 198
L S +P D G P PGR+ + G DG
Sbjct: 928 -----LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS---PGADGPPGR 979
Query: 199 DAGAGVRGCRGCRGRGVGAAG--GSVAGPG 226
D AGV+G RG G VGA G G PG
Sbjct: 980 DGAAGVKGDRGETG-AVGAPGAPGPPGSPG 1008
Score = 46.6 bits (109), Expect = 2e-05
Identities = 58/188 (30%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 57 GPGV-SAVGASGQQ-----RAPESNERPAEEP-TPAPMPSSAPRGPTEPALRRPSSADRP 109
GPG A GA G+ R PE + P EP TP S P G A P + P
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG---SPGPAG----ASGNPGTDGIP 347
Query: 110 LAPGPSSSPGAGRAPG--AMASPSGSSKATGK--PRGRDGRP-----RREEDDVTPEEKR 160
A G + +PG APG P G ATG P+G+ G P + E+
Sbjct: 348 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG-------- 399
Query: 161 LRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAG-AGVRGCRGCRG-RGVGAA 218
+G P + AP P +E G+ GV G G RG G RG G
Sbjct: 400 -----PKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 454
Query: 219 GGSVAGPG 226
G PG
Sbjct: 455 AGPKGAPG 462
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/161 (32%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 6 GRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLG-QGRRAQRRPGPGVSAVG 64
G+P AG+P AG R P+ A G G +G R PG+ G
Sbjct: 180 GKPGDDGEAGKPGK-----AGERGPPGPQGARGFPGTPGLPGVKGHRGY----PGLD--G 228
Query: 65 ASGQQRAPE---SNERPAEEPTPAPM-PSSAP--RGPTEPALR--------RPSSADRPL 110
A G+ AP + P E +P PM P P RG T PA +P A P
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288
Query: 111 APGPSSSPGAGRAPGAM--ASPSGSSKATGK--PRGRDGRP 147
GP+ PG APGA A P+G+ G PRG G P
Sbjct: 289 PVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP 329
Score = 43.1 bits (100), Expect = 2e-04
Identities = 72/244 (29%), Positives = 85/244 (34%), Gaps = 48/244 (19%)
Query: 5 SGRPFSPPWAGRPSGCNLVG----AGRRCRAWPERAWPQAGDSDCLG-QGRRAQRR---- 55
+G P P G P L G AG + + P A + G G QG R Q
Sbjct: 476 NGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 535
Query: 56 PGP-GVSA----VGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR-----PSS 105
PGP G + G G AP P ++ ++ P GP PA R P
Sbjct: 536 PGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG---AAGPPGPAGPAGERGEQGAPGP 592
Query: 106 ADRPLAPGPSSSPGAGRAPGAMASPSGSSKATG--KPRGRDGRPRREEDDVTPEEKRLRL 163
+ PGP PG G PG P G + A G PRG G P
Sbjct: 593 SGFQGLPGPPGPPGEGGKPGDQGVP-GEAGAPGLVGPRGERGFPG--------------- 636
Query: 164 LLEEGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGS 221
E GS G PR PG T G G G G +G G GAAG
Sbjct: 637 --ERGSPGA-QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER-GAAG-- 690
Query: 222 VAGP 225
+AGP
Sbjct: 691 IAGP 694
Score = 42.0 bits (97), Expect = 5e-04
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 26/181 (14%)
Query: 64 GASGQQRAPESNERPAEEPTPA-PMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGR 122
G G++ AP R E TP P P P P P L +A +A G G G
Sbjct: 69 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ--MAGGFDEKAG-GA 125
Query: 123 APGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP---------- 172
G M P G G P G G P + P E E G + P
Sbjct: 126 QLGVMQGPMGPMGPRGPP-GPAGAPGPQGFQGNPGEPG-----EPGVSGPMGPRGPPGPP 179
Query: 173 ----DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPGL 227
DDGE A +PG+ G G G+ G +G RG G+ A G PG+
Sbjct: 180 GKPGDDGE-AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGV 238
Query: 228 K 228
K
Sbjct: 239 K 239
Score = 40.8 bits (94), Expect = 0.001
Identities = 49/170 (28%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 63 VGASGQQRAP-ESNERPAEEPTPAPMPSSA--PRGPTEPALRRPSSADRPLAPGPSSSPG 119
VG G + AP + R P P P+ A +G P PGP+ S G
Sbjct: 701 VGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGP-------------PGPAGSAG 747
Query: 120 AGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGED 177
A APG P G + G P G DG+P + + +K + G+ P
Sbjct: 748 ARGAPGERGETGPPGPAGFAGPP-GADGQPGAKGEQGEAGQKG-----DAGAPGPQGPSG 801
Query: 178 APRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-GVGAAGGSVAGPG 226
AP P + TG TG G + G G G GR G + G+ PG
Sbjct: 802 APGP-QGPTGV-TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 849
Score = 37.7 bits (86), Expect = 0.010
Identities = 59/248 (23%), Positives = 75/248 (30%), Gaps = 28/248 (11%)
Query: 6 GRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLG--QGRRAQRRPGPGVSAV 63
G P +P G P G G A + + LG QG P
Sbjct: 87 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 146
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGP-----TEPALRRPSSADRPLAPGPSSSP 118
GA G Q + P E PM P GP + +P A PGP +
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR 206
Query: 119 GAGRAPG-----------------AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRL 161
G PG A G +G P G +G P P E+
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSP-GENGSPGPMGPRGLPGERGR 265
Query: 162 RLLLEEGSAQPDDGEDAPR--PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAA 218
A+ +DG+ P PG G G + AG G RG G +G
Sbjct: 266 TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 325
Query: 219 GGSVAGPG 226
G+ PG
Sbjct: 326 PGTPGSPG 333
Score = 35.4 bits (80), Expect = 0.050
Identities = 43/155 (27%), Positives = 53/155 (34%), Gaps = 27/155 (17%)
Query: 6 GRPFSPPWAGRPSGCNLVGA-GRRCRAWPERAWPQAGDSDCLG----QGRRAQRRPG--P 58
G P +P G P G G R A + +G + G QG R + P
Sbjct: 996 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1055
Query: 59 GVSAV----GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGP 114
G + G +G Q P ++ P S PRGP P GP
Sbjct: 1056 GERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-------------GP 1102
Query: 115 SSSPGAGRAPGAMA--SPSGSSKATGKPRGRDGRP 147
S GA PG + P G S TG P G G P
Sbjct: 1103 SGKDGANGIPGPIGPPGPRGRSGETG-PAGPPGNP 1136
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 54.7 bits (130), Expect = 8e-08
Identities = 72/244 (29%), Positives = 91/244 (37%), Gaps = 27/244 (11%)
Query: 5 SGRPFSPPWAGRPSGCNLVGA-GRRCRAWPERAWPQAGDSDCLG----QGRRAQRRP--G 57
+G P +P G P G GA G + P G S G QG + +R G
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG 868
Query: 58 PGVSAV-GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA----- 111
PG + GA G P SN P P P S GP PA + ++
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGP---PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGD 925
Query: 112 ---PGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEG 168
PG SPGA PGA P G + TG RG G P +P + ++ +
Sbjct: 926 AGQPGEKGSPGAQGPPGA-PGPLGIAGITG-ARGLAGPPGMPGPRGSPGPQGVKGESGKP 983
Query: 169 SAQPDDGEDAP-----RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSV 222
A GE P PG T + G DG SD G G G +G RG + G+
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP 1043
Query: 223 AGPG 226
PG
Sbjct: 1044 GAPG 1047
Score = 44.3 bits (103), Expect = 1e-04
Identities = 51/180 (28%), Positives = 59/180 (32%), Gaps = 37/180 (20%)
Query: 56 PG-PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGP 114
PG PG A G G +P SN P + P P + +GP P P P G
Sbjct: 344 PGSPG--AKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP----PGINGSPGGKGE 397
Query: 115 SSSPGAGRAPGAMAS--PSGSSKATGKP--RGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
G APG M + P G + A G P RG G P +
Sbjct: 398 MGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGK--------------------- 436
Query: 171 QPDDGEDAPRPGRKETGT-----QTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGP 225
GE PR R E G G DG+ S G G G G AGP
Sbjct: 437 NGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGP 496
Score = 38.9 bits (89), Expect = 0.005
Identities = 58/191 (30%), Positives = 66/191 (34%), Gaps = 50/191 (26%)
Query: 56 PGPGVSAVGASGQQRAPESNERPAEEPTPA-----PMPSSAPRGPTEPALRR-------- 102
PGP V G SG R PA P PA P P PRG R
Sbjct: 1052 PGP-VGPAGKSGD-RGESGPAGPAGAPGPAGSRGAPGPQG-PRGDKGETGERGAAGIKGH 1108
Query: 103 ---PSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEK 159
P + P +PGP+ GA +PG A P G +G P G+DG
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGP-AGPRGPVGPSGPP-GKDGT------------- 1153
Query: 160 RLRLLLEEGSAQPDD-GEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAA 218
S P G PR R E G++ G G G G G GVGAA
Sbjct: 1154 ---------SGHPGPIGPPGPRGNRGERGSE-GSPGHPGQPGPPGPPGAPGPCCGGVGAA 1203
Query: 219 -----GGSVAG 224
GG AG
Sbjct: 1204 AIAGIGGEKAG 1214
Score = 35.8 bits (81), Expect = 0.039
Identities = 50/196 (25%), Positives = 63/196 (32%), Gaps = 24/196 (12%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G+ R P + G +GQ P P S RG T P P A
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP----PGPAGF 811
Query: 109 PLAPGPSSSPGA------------GRAPGAMASPSGSSKATGKP-----RGRDGRPRREE 151
P APG + PG G PG +A P G S G P +G G P
Sbjct: 812 PGAPGQNGEPGGKGERGAPGEKGEGGPPG-VAGPPGGSGPAGPPGPQGVKGERGSPGGPG 870
Query: 152 DDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 211
P + L + P + PG+ G G S +G +G G
Sbjct: 871 AAGFPGARGLP-GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQP 929
Query: 212 G-RGVGAAGGSVAGPG 226
G +G A G PG
Sbjct: 930 GEKGSPGAQGPPGAPG 945
Score = 35.4 bits (80), Expect = 0.050
Identities = 44/175 (25%), Positives = 54/175 (30%), Gaps = 32/175 (18%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR-----------PSSADRPLAP 112
G G Q P N + P P +G T P + P +P P
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEP 659
Query: 113 GPSSSPGAGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
GP GA APG G + A G+ P G G P L G
Sbjct: 660 GPKGDAGAPGAPGG----KGDAGAPGERGPPGLAGAP--------------GLRGGAGPP 701
Query: 171 QPDDGEDAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAG 224
P+ G+ A PG G G G G G +G +G G V G
Sbjct: 702 GPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG 756
Score = 34.7 bits (78), Expect = 0.086
Identities = 47/181 (25%), Positives = 55/181 (30%), Gaps = 21/181 (11%)
Query: 58 PGVSAV----GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPG 113
PGV G G P +N P P GP + + +R APG
Sbjct: 455 PGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG-APG 513
Query: 114 PSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPD 173
P+ GA PG P G RG G P D P + E G P
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGM-----RGMPGSPGGPGSDGKPGPPGSQ--GESGRPGP- 565
Query: 174 DGEDAPR--------PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGP 225
G PR PG K G +G G G +G G G GP
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
Query: 226 G 226
G
Sbjct: 626 G 626
Score = 33.9 bits (76), Expect = 0.15
Identities = 59/222 (26%), Positives = 75/222 (33%), Gaps = 38/222 (17%)
Query: 26 GRRCRAWPERAWPQAGDSDCLGQGRRAQRR-PGPGVSAVGASGQQRAPESNERPAEEPTP 84
G C P+ P A GQG + + PGP G G+ P +P +P
Sbjct: 82 GECCAVCPQP--PTAPTRPPNGQGPQGPKGDPGPP----GIPGRNGDPGIPGQPGSPGSP 135
Query: 85 AP--MPSSAPRGPTEPALRRPSS------ADRPLA--------PGPSSSPGAGRAPGAMA 128
P + S P GP + + S A LA PGP PG PG+
Sbjct: 136 GPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPG 195
Query: 129 SPSGSSKATGKP-RGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP-RPGRKET 186
SP G G+P + P + P G A D P RPG +
Sbjct: 196 SP-GYQGPPGEPGQAGPSGPPGPPGAIGP----------SGPAGKDGESGRPGRPGERGL 244
Query: 187 GTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLK 228
G G G++G RG GR G PGLK
Sbjct: 245 PGPPGIKGPAGIPGFPGMKGHRGFDGR--NGEKGETGAPGLK 284
Score = 32.3 bits (72), Expect = 0.43
Identities = 59/233 (25%), Positives = 77/233 (33%), Gaps = 55/233 (23%)
Query: 11 PPWAGRPSGCNLVGAGRRCRAWPERAWPQA--------GDSDCLGQGRRAQRRPGPGVSA 62
PP A P G + R P P+ G+S G + R PG
Sbjct: 940 PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999
Query: 63 V-GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAG 121
+ G +G P + P + P S +G DR G + SPGA
Sbjct: 1000 LPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKG------------DR----GENGSPGAP 1043
Query: 122 RAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRP 181
APG P P G+ G R E P G+ P AP P
Sbjct: 1044 GAPGHPGPPGPVG-----PAGKSG-DRGESGPAGP----------AGAPGPAGSRGAPGP 1087
Query: 182 -GRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-----GVGAAG--GSVAGPG 226
G + +TG G AG++G RG G G AG G++ PG
Sbjct: 1088 QGPRGDKGETGERG------AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 50.1 bits (118), Expect = 2e-06
Identities = 45/149 (30%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 57 GPGVSAVGASGQQRAPESNERPAEEPTPAP---MPSSAPRGPTE-PALRRPSSADRPLAP 112
G VS G +G P P P P P P SAP G + PA S P P
Sbjct: 2 GNEVSLEGGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVP 61
Query: 113 GPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP 172
GP PG G PG+ + + G R P ++ TP + R E AQ
Sbjct: 62 GPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTP-KQASATTPGHESPR----ETRAQG 116
Query: 173 DDGEDAPRPGRK---ETGTQTGGDGRGVS 198
G++A P R ++ TQ G VS
Sbjct: 117 PAGQEADGPRRTLQVDSRTQRSGRSPSVS 145
Score = 39.3 bits (90), Expect = 0.003
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 63 VGASGQQRAPE-------SNERPAEEPT----PAPMPSSAPRGPTEPALRRPSSADRPL- 110
+G +G R P S+ PAE P PA + GP+ P + ++ + PL
Sbjct: 2253 LGPTGLYRYPAPSRFPIASSVPPAEGPVYLGKPAAAKAPGAGGPSRPEMPVGAAREEPLP 2312
Query: 111 ----------APGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKR 160
A P+ +P AG+ P A A+P G S A +P +EE +E+
Sbjct: 2313 TTTPAAIKEAAGAPAPAPLAGQKPPADAAPGGGSGALSRPGFEKEEASQEERQRKQQEQL 2372
Query: 161 LRL 163
L+L
Sbjct: 2373 LQL 2375
Score = 35.8 bits (81), Expect = 0.039
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 38 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTE 97
PQ G S G P G+ G +AP+ P +P P P P+ G
Sbjct: 3821 PQPGPSTATGPQPAG---PPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAG--- 3874
Query: 98 PALRRPSSADRPLAPG-PSSSPGA-GRAPGAMASPSGSSKATGK 139
RP PG P+ PGA G + + P G+++ GK
Sbjct: 3875 ---ARPGG-----TPGAPAGQPGADGESVFSKILPGGAAEQAGK 3910
Score = 34.3 bits (77), Expect = 0.11
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 4 LSGRPFSP-PWAGRPSGCNLVGAGRRCRAWPERAWPQAG-----DSDCLGQGR-RAQRRP 56
L GR +P P + + +G R P+ Q G L Q R + Q +P
Sbjct: 3747 LQGRQAAPGPQQSQSPSSRQIPSGAASRQ-PQTQQQQQGLGLQPPQQALTQARLQQQSQP 3805
Query: 57 GPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA----- 111
SA AS P+ A P PA P + ++ + P P A
Sbjct: 3806 TTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPG 3865
Query: 112 PGPSSSPGAGRAPGAMASPSGSSKATGK 139
PGP+ R G +P+G A G+
Sbjct: 3866 PGPAGVKAGARPGGTPGAPAGQPGADGE 3893
Score = 33.9 bits (76), Expect = 0.15
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 61 SAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGA 120
+ A P + ++P +P PAP S+ GPT+ + P PGPS+ P
Sbjct: 3037 ATAAAPATPSGPTAFQQPRFQP-PAPQYSAGSGGPTQNGF---PAHQAPTYPGPSTYPAP 3092
Query: 121 GRAPGAM--ASPSGSSKATGKPRG 142
PGA A P ++ +P G
Sbjct: 3093 AFPPGASYPAEPGLPNQQAFRPTG 3116
Score = 33.5 bits (75), Expect = 0.19
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 48 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRG----PTEPALRRP 103
QGR+A PGP Q ++P S + P+ + P +G P + AL +
Sbjct: 3748 QGRQAA--PGPQ--------QSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQA 3797
Query: 104 SSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRL 163
+ S+P A + P P G S ATG G PR E+ + +
Sbjct: 3798 RLQQQSQPTTRGSAPAASQ-PAGKPQP-GPSTATGPQPA--GPPRAEQTNGS-------- 3845
Query: 164 LLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSV 222
+G+A+ AP+ GR G G AGA G G GA G SV
Sbjct: 3846 ---KGTAK------APQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESV 3895
Score = 32.0 bits (71), Expect = 0.56
Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 53 QRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAP 112
Q +P P + E+ +P P P AP TEP R
Sbjct: 374 QGQPAPSKGTPKIVFNDASKEAGPKPLGS---GPGPGPAPGAKTEPGARM---------- 420
Query: 113 GPSSSPGAGRAPGAMASP-------SGSSKATGKPR 141
GP S PGA G SP +SKA KP+
Sbjct: 421 GPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKPK 456
Score = 29.6 bits (65), Expect = 2.8
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 8 PFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRP-GPGVSAVGAS 66
P PP + +P VGA P RA +G S +G + +P GP +
Sbjct: 530 PLPPPTSQQPP----VGA-------PHRA---SGTSPLKQKGPQGLGQPSGPLPAKASPL 575
Query: 67 GQQRAP-ESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSP 118
+ +P S P +P A PS P E R P+ A+ P P ++P
Sbjct: 576 STKASPLPSKASPQAKPLRASEPSKTPSSVQEKKTRVPTKAEPMPKPPPETTP 628
Score = 28.9 bits (63), Expect = 4.7
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 77 RPAEEPTPAPMPSSA-PRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSK 135
+P + P PS P+ A + PGP +PGA PGA P
Sbjct: 368 QPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEPGARMGPGSGPG 427
Query: 136 ATGKPRG 142
A K G
Sbjct: 428 ALPKTGG 434
Score = 28.5 bits (62), Expect = 6.2
Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 9/132 (6%)
Query: 33 PERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAP 92
P A P G G G+ G G + + A P P P P P S
Sbjct: 18 PGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTS 77
Query: 93 R--GPTEPALRRPSSADRP-----LAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDG 145
R P EP + +++ P PG SP RA G + + T + R
Sbjct: 78 RRLDPKEPLGNQRAASPTPKQASATTPG-HESPRETRAQGPAGQEADGPRRTLQVDSRTQ 136
Query: 146 RPRREEDDVTPE 157
R R V+P+
Sbjct: 137 RSGR-SPSVSPD 147
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 50.1 bits (118), Expect = 2e-06
Identities = 49/149 (32%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 78 PAEEPTPAPMP--SSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSK 135
P EEP+P P P S PTEP + P+ PLA P SP P A + S K
Sbjct: 4910 PPEEPSPPPSPLAPSPASPPTEPLVELPT---EPLAEPPVPSP----LPLASSPESARPK 4962
Query: 136 ATGKP--RGRDGRPRREEDDVTPEEKRLRLLL--EEGSAQPDDGEDAPRPGRKETGTQTG 191
+P G D RP R + KRLRLLL ++GS + +D + ++ GT
Sbjct: 4963 PRARPPEEGEDSRPPRLKKWKGVRWKRLRLLLTIQKGSGRQEDEREVAE-FMEQLGTALR 5021
Query: 192 GDGRGVSDAGAGVRGCRGCRGRGVGAAGG 220
D +R C C G GA G
Sbjct: 5022 PD-----KVPRDMRRCCFCHEEGDGATDG 5045
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 38 PQAGDSDCLGQGRRAQRRP-----------GPGVSAVGASGQQRAPESNERPAEEPTP-A 85
PQ G LG G R Q P GP + V + +P+ +RP++ P+P +
Sbjct: 4269 PQTGPLQELGAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSPSS 4328
Query: 86 PMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMA 128
+P+ A PT P +P GP+ P GR A A
Sbjct: 4329 QLPTEAQLPPTHPGTPKPQ--------GPTLEPPPGRVSPAAA 4363
Score = 38.9 bits (89), Expect = 0.005
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 78 PAEEPTPAPMPSSAPRGPTEPALRR-PSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA 136
P EE +P P +P P A R P + PL+P P SP ++ P +S+
Sbjct: 575 PPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESP--------LSPPPEASRL 626
Query: 137 TGKPRGRDGRPRREEDDVTPEEKRLRL----LLEEGSAQPDDGEDAPRPGRKET 186
+ P P EE ++P + RL ++ S P++ +P P T
Sbjct: 627 SPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPT 680
Score = 36.6 bits (83), Expect = 0.023
Identities = 51/190 (26%), Positives = 64/190 (33%), Gaps = 24/190 (12%)
Query: 76 ERPAEEPTPAPMPS-SAPRGPTEPALRRPSSADRPLAP-----GPSSSPGAGRAPGAMAS 129
E A P P+PM S P PAL S AP P S P G+ PG++AS
Sbjct: 1087 EPSATSPLPSPMGDLSCPAPSPAPALDDFSGLGEDTAPLDGIDAPGSQPEPGQTPGSLAS 1146
Query: 130 PSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPR-PGRKETGT 188
S P E VTP E G P + ++ PR P T
Sbjct: 1147 ELKGSPVLLDP--------EELAPVTPMEVYPECKQTAGQGSPCEEQEEPRAPVAPTPPT 1198
Query: 189 QTGGD------GRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDS 242
D DA A G G GGS++ ++L + AR +
Sbjct: 1199 LIKSDIVNEISNLSQGDASASFPGSEPLLGSPDPEGGGSLS---MELGVSTDVSPARDEG 1255
Query: 243 SRRPPRRQLP 252
S R LP
Sbjct: 1256 SLRLCTDSLP 1265
Score = 35.4 bits (80), Expect = 0.050
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 78 PAEEPTPAPMPSSAPRGPTEPALR-RPSSADRPLAPGPSSSPGAGRAPGAMAS-PSGSSK 135
P EE +P P +P P A R P D P +P P SP + ++ S P S
Sbjct: 665 PPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESP 724
Query: 136 ATGKPRGRDGRPRREEDDVT--PEEKRLRLLLEEG--SAQPDDGEDAPRP 181
P PR E ++ PEE L EE S Q ++ +P+P
Sbjct: 725 LLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQP 774
Score = 34.7 bits (78), Expect = 0.086
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 73 ESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSG 132
ES P EE P+P + P E + P + PL+P P P + P
Sbjct: 517 ESPLSPPEESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELP--------TSPPPE 568
Query: 133 SSKATGKPRGRDGRPRREEDDVTPEEKRLRLL--LEEGSAQPDDGEDAPRP 181
+S+ + P P EE ++P + RL EE P E P
Sbjct: 569 ASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSP 619
Score = 34.3 bits (77), Expect = 0.11
Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 78 PAEEPTPAPMPSSAPRGPTEPALR----------RPSSADRPLAPGPSSSPGAGRAPGAM 127
P E+ +P P +P P R P + PL+P P SP + +
Sbjct: 629 PPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASR 688
Query: 128 ASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP 172
SP T P P PE+ + L LEE P
Sbjct: 689 LSPPPEDSPTSPP------PEDSPASPPPEDSLMSLPLEESPLLP 727
Score = 33.9 bits (76), Expect = 0.15
Identities = 34/130 (26%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 58 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPT----EPALRRPSSADRPLAPG 113
P V GQ + +EP P + P G EP L P + + PL P
Sbjct: 385 PDALYVACQGQPKGGHVTSMQPKEPGPLQCEAK-PLGKAGVQLEPQLEAPLNEEMPLLPP 443
Query: 114 PSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLL--LEEGSAQ 171
P SP ++ P S + P P EE +P + L L LEE
Sbjct: 444 PEESP--------LSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLS 495
Query: 172 PDDGEDAPRP 181
P E P
Sbjct: 496 PPPEESPLSP 505
Score = 32.7 bits (73), Expect = 0.33
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 72 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAP-GPSSSPGAGRAPGAMASP 130
P P +E P P PR P P P+ P P SSP + P + SP
Sbjct: 4267 PGPQTGPLQELGAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSP 4326
Query: 131 SGSSKATGK-PRGRDGRPRREEDDVTPEEKRL 161
S + P G P+ + + P R+
Sbjct: 4327 SSQLPTEAQLPPTHPGTPKPQGPTLEPPPGRV 4358
Score = 30.0 bits (66), Expect = 2.1
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 77 RPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA 136
RP EE +P P +P P + + PL+P P SP + ++ P +S
Sbjct: 487 RPLEESPLSPPPEESPLSPPPESSPFSPLEESPLSP-PEESPPSPALETPLSPPPEASPL 545
Query: 137 TGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRP 181
+ P EE +P + RL S P++ +P P
Sbjct: 546 SPPFEESPLSPPPEELPTSPPPEASRL-----SPPPEESPMSPPP 585
Score = 29.6 bits (65), Expect = 2.8
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 76 ERPAEEPTPAPMPSSAPRGPT-----------EPALRRPSSADRPLAPGPSSSP 118
E+P EEP P P P P EPAL P + PL+P P P
Sbjct: 865 EKPPEEPGQCPAPEELPLFPPPGEPSLSPLLGEPALSEP--GEPPLSPLPEELP 916
Score = 29.6 bits (65), Expect = 2.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 68 QQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSS-----ADRPLAPGPSSSP 118
+ ++P RP E P P + AP P+ P + RP S A PL P P P
Sbjct: 2339 EPQSPGLGLRPQEPP---PAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPP 2391
Score = 28.5 bits (62), Expect = 6.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 78 PAEEPTP-APMPSSAPRGPTEPALRRP--SSADRPLAP---GPSSSPGAGRAPGAMASPS 131
P+++P AP PR PT P P S P P G SS PGAG+ +P
Sbjct: 2172 PSQDPFGLAPAYPLEPRFPTAPPTYPPYPSPTGAPAQPPMLGASSRPGAGQPGEFHTTPP 2231
Query: 132 GSSK 135
G+ +
Sbjct: 2232 GTPR 2235
Score = 28.5 bits (62), Expect = 6.2
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 53 QRRPGPGVS---AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRP 109
Q++ GPGV A+G Q P S+ + +P P P+G PA P
Sbjct: 3756 QQQQGPGVQTNQALGPKPQGLMPPSSHQGLLVQQLSPQPPQGPQGMLGPAQVAVLQQQHP 3815
Query: 110 LAPGP 114
A GP
Sbjct: 3816 GALGP 3820
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.3 bits (116), Expect = 3e-06
Identities = 54/186 (29%), Positives = 65/186 (34%), Gaps = 24/186 (12%)
Query: 48 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRR----- 102
+G + PG G SG+ AP S + P P+ P GP +R
Sbjct: 415 RGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGE 474
Query: 103 PSSADRPLAPGPSSSPGAGRAPGA--MASPSGSSKATGK-----PRGRDGRPRREEDDVT 155
P P PG PG+ PGA +A P G + G P+G G R +
Sbjct: 475 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL 534
Query: 156 PEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG--R 213
P K L GS PD P P G DGR G RG G G
Sbjct: 535 PGAK--GLTGSPGSPGPDGKTGPPGP--------AGQDGRPGPPGPPGARGQAGVMGFPG 584
Query: 214 GVGAAG 219
GAAG
Sbjct: 585 PKGAAG 590
Score = 45.4 bits (106), Expect = 5e-05
Identities = 56/166 (33%), Positives = 62/166 (37%), Gaps = 24/166 (14%)
Query: 78 PAEEPTPAPMPS----SAPRGPTEPALRRPSSADR--PLAPGP---SSSPGAGRAPGAMA 128
P P PA P S P GP P R + DR P PGP + PGA PGA
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 129 SPSGSSKATGK-----PRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP-RPG 182
P G + A G P G G P + P K R GSA P P G
Sbjct: 828 EP-GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR-----GSAGPPGATGFPGAAG 881
Query: 183 RKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAG--GSVAGPG 226
R +G G AG G +G RG G AG G V PG
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE-TGPAGRPGEVGPPG 926
Score = 43.1 bits (100), Expect = 2e-04
Identities = 73/255 (28%), Positives = 90/255 (35%), Gaps = 52/255 (20%)
Query: 5 SGRPFSPPWAGRPSGCNLVG----AGRRCRAWPERAWPQAGDSDCLGQG--RRAQRRPGP 58
+G P P AG+ G G AGR P AG+ G A PGP
Sbjct: 892 AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP 951
Query: 59 -GVSA----VGASGQ--QRAPESNERPAEEP-TPAPMPSSAPRGPTEPA-----LRRPSS 105
G++ VG GQ +R P+ EP P +S RGP P P
Sbjct: 952 QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
Query: 106 ADRPLAPGPSSSPGAGRAPGAM--------ASPSGSSKATGK-----PRGRDGRPRREED 152
+ R APG SPG +PGA A P G+ A G P G+ G R E
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG-DRGETG 1070
Query: 153 DVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG 212
P + A+ G PR + ETG Q G RG +G RG
Sbjct: 1071 PAGPAGP-----VGPVGARGPAGPQGPRGDKGETGEQ-------------GDRGIKGHRG 1112
Query: 213 -RGVGAAGGSVAGPG 226
G+ G PG
Sbjct: 1113 FSGLQGPPGPPGSPG 1127
Score = 42.7 bits (99), Expect = 3e-04
Identities = 55/195 (28%), Positives = 70/195 (35%), Gaps = 49/195 (25%)
Query: 72 PESNERPAEEPTPA---PMPSSAPRGPTEPA--LRRPSSADRPLAPGPSSSPGAGRAPG- 125
P+ +E P ++ T P + PRGP PA R +P PGP PG PG
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGL 155
Query: 126 --------------------AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLL 165
++ P G S G P G G P + P E
Sbjct: 156 GGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP-GPPGAPGPQGFQGPPGEPG----- 209
Query: 166 EEGSAQP--------------DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCR 211
E G++ P DDGE A +PGR G G AG+ G +G R
Sbjct: 210 EPGASGPMGPRGPPGPPGKNGDDGE-AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 268
Query: 212 G-RGVGAAGGSVAGP 225
G G+ A G AGP
Sbjct: 269 GFSGLDGAKGD-AGP 282
Score = 40.0 bits (92), Expect = 0.002
Identities = 50/200 (25%), Positives = 64/200 (32%), Gaps = 35/200 (17%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRG-------PTEPALR 101
G R ++ P G G P +P E+ P + + P G P E ++
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 102 RPSSADRPL----APGPSSSPGAGRAPGAMASPSGSSKATGKP--RGRDG--RPRREEDD 153
P P APG + G APGA S G+ G P RG G P+ + D
Sbjct: 689 GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS-QGAPGLQGMPGERGAAGLPGPKGDRGD 747
Query: 154 VTPEEKRLRLLLEEGSAQPDDGEDAPR--------PGRKETGTQTGGDGRGVSDAGAGVR 205
P+ A G+D R PG G G G R
Sbjct: 748 AGPK-----------GADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR 796
Query: 206 GCRGCRGRGVGAAGGSVAGP 225
G G RG AGP
Sbjct: 797 GAPGDRGEPGPPGPAGFAGP 816
Score = 37.7 bits (86), Expect = 0.010
Identities = 49/171 (28%), Positives = 58/171 (33%), Gaps = 31/171 (18%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 123
G +G + P S P E P M PRG P RP APGP+ + G A
Sbjct: 281 GPAGPKGEPGS---PGENGAPGQM---GPRG-------LPGERGRPGAPGPAGARGNDGA 327
Query: 124 PGAMASPSGSSKATGKP--------RGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDG 175
GA A P G + G P +G G P+ P+ R G P
Sbjct: 328 TGA-AGPPGPTGPAGPPGFPGAVGAKGEAG-PQGPRGSEGPQGVR-------GEPGPPGP 378
Query: 176 EDAPRP-GRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGP 225
A P G Q G G + AG G G RG G GP
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429
Score = 34.3 bits (77), Expect = 0.11
Identities = 55/175 (31%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 64 GASGQQRAPESNERPAEEPTP-----APMPSSAPRGPTEP--ALRRPSSADRPLAPGPSS 116
GA G P PA P P AP A RG P A P +A R PGPS
Sbjct: 833 GAKGDA-GPPGPAGPAGPPGPIGNVGAPGAKGA-RGSAGPPGATGFPGAAGRVGPPGPSG 890
Query: 117 SPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGE 176
+ G PG P+G G PRG G P +V P E+GS D
Sbjct: 891 NAGPPGPPG----PAGKEGGKG-PRGETG-PAGRPGEVGPPGPP-GPAGEKGSPGADGPA 943
Query: 177 DAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG----RGVGAAGGSVAGPG 226
AP PG + Q G G G G G G +G A G PG
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG 998
Score = 29.6 bits (65), Expect = 2.8
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 123
G SG Q P P E+ + PRGP P SA P G + PG
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP-------PGSAGAPGKDGLNGLPGPIGP 1164
Query: 124 PGAMASPSGSSKATGKPRGRDGRP 147
PG P G + G P G G P
Sbjct: 1165 PG----PRGRTGDAG-PVGPPGPP 1183
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 48.9 bits (115), Expect = 4e-06
Identities = 54/183 (29%), Positives = 69/183 (37%), Gaps = 24/183 (13%)
Query: 48 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 107
+G+R R V G G++ AP + P + P P + RGP + + S D
Sbjct: 500 EGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGD 559
Query: 108 RPLAPGPSSSPGAGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLL 165
P PG PGA G + P G G P G DGRP P +R
Sbjct: 560 -PGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAP-GEDGRPG------PPGSIGIR--- 608
Query: 166 EEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR-GVGAAGGSVAG 224
QP PG K + +G G+ AGV G RG G+ G G V
Sbjct: 609 ----GQPG---SMGLPGPKGS---SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP 658
Query: 225 PGL 227
PGL
Sbjct: 659 PGL 661
Score = 41.6 bits (96), Expect = 7e-04
Identities = 66/241 (27%), Positives = 77/241 (31%), Gaps = 40/241 (16%)
Query: 6 GRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGA 65
G+P +P G PS G R A AG + G G + PG V VG
Sbjct: 168 GQPGAPGPPGHPSHPGPDGLSRPFSA------QMAGLDEKSGLGSQVGLMPG-SVGPVGP 220
Query: 66 ------SGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPG 119
GQQ P E P PM RGP P P PG PG
Sbjct: 221 RGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP----------PGKPGEDGEPG 270
Query: 120 AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP 179
PG + +GS A G P G G P + K L E A GE P
Sbjct: 271 RNGNPGEVGF-AGSPGARGFP-GAPGLPGLKGH---RGHKGLEGPKGEVGAPGSKGEAGP 325
Query: 180 RPGRKETGT-----QTGGDGRGVSDAGAGVRGCRGCRGR-------GVGAAGGSVAGPGL 227
G G GR G RG G G+ G+ + G PG+
Sbjct: 326 TGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGM 385
Query: 228 K 228
K
Sbjct: 386 K 386
Score = 40.0 bits (92), Expect = 0.002
Identities = 71/241 (29%), Positives = 87/241 (36%), Gaps = 61/241 (25%)
Query: 26 GRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEE-PTP 84
G R R P+ A Q G G +PGP + +G G P + E PT
Sbjct: 342 GERGRLGPQGAPGQRGAHGMPG-------KPGP-MGPLGIPGSSGFPGNPGMKGEAGPTG 393
Query: 85 APMPS--------SAPRGPT-EPALRRPSSAD-RPLAPGPSSSPGAGRAPGAMASPSGSS 134
A P + P GP P L D P A GP+ SPG PG+ A P GS
Sbjct: 394 ARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGS-AGPPGSP 452
Query: 135 KATGK--PRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP--------------DDGEDA 178
G P+G G+P D P K G A P GE+
Sbjct: 453 GPQGSTGPQGIRGQP---GDPGVPGFK--------GEAGPKGEPGPHGIQGPIGPPGEEG 501
Query: 179 PRPGRKETGT-----------QTGGDGRGVSDAGAGVRGCRGCRGRGVGAAG--GSVAGP 225
R R + GT G G SD G +G +G RG VG++G GS P
Sbjct: 502 KRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERG-PVGSSGPKGSQGDP 560
Query: 226 G 226
G
Sbjct: 561 G 561
Score = 36.6 bits (83), Expect = 0.023
Identities = 55/205 (26%), Positives = 63/205 (30%), Gaps = 48/205 (23%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAE--------EPTPAPMPSS-APRGPTE-P 98
G R + P V G G P P E P P + S P GP P
Sbjct: 834 GSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVP 893
Query: 99 ALRR-------------PSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKP--RGR 143
L+ P SA R PGP+ +PG A P G G P RG
Sbjct: 894 GLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP-------AGPLGEPGKEGPPGLRGD 946
Query: 144 DGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGE-DAPRPGRKETGTQTGGDGRGVSDAGA 202
G R D G A P G D PG G G +
Sbjct: 947 PGSHGRVGD--------------RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQR 992
Query: 203 GVRGCRGCRG-RGVGAAGGSVAGPG 226
G+ G G RG RG+ G PG
Sbjct: 993 GIVGMPGQRGERGMPGLPGPAGTPG 1017
Score = 36.2 bits (82), Expect = 0.030
Identities = 52/201 (25%), Positives = 64/201 (31%), Gaps = 37/201 (18%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPT------------ 96
G R ++ P G G P +P ++ P + P GP
Sbjct: 663 GERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEP 722
Query: 97 -------EPALRRPSSADRPL-APGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 148
E + D P +PGPS +PG PG P RG G P
Sbjct: 723 GITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPG--------ERGIAGTPG 774
Query: 149 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRP-GRKETGTQTGGDGRGVSDAGAGVRGC 207
+ D EK EG+A D P P G TG G G G
Sbjct: 775 PKGDRGGIGEKG-----AEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGS 829
Query: 208 RGCRG-RGVGAAGGSV--AGP 225
RG G RG G+V AGP
Sbjct: 830 RGNPGSRGENGPTGAVGFAGP 850
Score = 36.2 bits (82), Expect = 0.030
Identities = 43/177 (24%), Positives = 52/177 (29%), Gaps = 30/177 (16%)
Query: 6 GRPFSPPWAGRPSGCNLVG----AGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVS 61
G P G P +G AG+R P+ GD G R R
Sbjct: 1092 GAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGD-----HGDRGDRGQKGHRG 1146
Query: 62 AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAP--------- 112
G G P N P P P GP P+ + + PL P
Sbjct: 1147 FTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPG--PLGPIGPPGVRGS 1204
Query: 113 ----GPSSSPGAGRAPGAMASPSGSSKATGKPRGR------DGRPRREEDDVTPEEK 159
GP PG PG P + A G G D P ED P++K
Sbjct: 1205 VGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDK 1261
Score = 35.8 bits (81), Expect = 0.039
Identities = 55/200 (27%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 49 GRRAQRR----PGPG-----VSAVGASGQQR-----APESNERPAEEPTP-APMPSSAPR 93
G+R +R PGP V GA+G + P + P EP P P +
Sbjct: 999 GQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP 1058
Query: 94 GPTEPALRRPSSADRPLAPGPSSSPGAGRAPG--AMASPSGSSKATGKP--RGRDGRPRR 149
G R D PGP+ PG+ APG G + G P RG G P R
Sbjct: 1059 GRDGAVGERGDRGD----PGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGR 1114
Query: 150 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQ--TGGDGRGVSDAGAGVRGC 207
P + R + D G+ + R TG Q G G AG+ G
Sbjct: 1115 AGKRGLPGPQGPR---GDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGP 1171
Query: 208 RGCRG-RGVGAAGGSVAGPG 226
G RG G G PG
Sbjct: 1172 FGPRGPPGPVGPSGKEGNPG 1191
Score = 28.5 bits (62), Expect = 6.2
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 112 PGPSSSPGAG-----RAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLE 166
PGP+ PG+ R P P G G+P G G+P P
Sbjct: 131 PGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEP-GVPGQPGAPGPPGHPSHPG-----P 184
Query: 167 EGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPG 226
+G ++P + A + G+Q G V G RG +G +G+ GA G PG
Sbjct: 185 DGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGP--RGPQGLQGQQGGA--GPTGPPG 240
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 48.1 bits (113), Expect = 8e-06
Identities = 54/180 (30%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 56 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS 115
PGP GA+GQ+ R P S P GP PA R P APGPS
Sbjct: 1364 PGPKGDP-GAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGER----GHPGAPGPS 1418
Query: 116 SSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQ---- 171
SPG PG+M + K R + ++ + R++ +E +A
Sbjct: 1419 GSPGLPGVPGSMGDMVNYDEI--KRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPG 1476
Query: 172 PDDGEDAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGR----GVGAAG-GSVAGP 225
P + AP RPG + G GR GVRG G +G G+G AG + GP
Sbjct: 1477 PPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGP 1536
Score = 35.8 bits (81), Expect = 0.039
Identities = 50/177 (28%), Positives = 62/177 (35%), Gaps = 26/177 (14%)
Query: 6 GRPFSPPWAGRPSGCNLVGA----------GRRCRAWPERAWPQAGDSDCLGQ-GRRAQR 54
G P +P GRP G G C A P + GQ G + ++
Sbjct: 691 GDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQ 750
Query: 55 RPGPGVSAVGASGQQRAPESNERPA-----EEPTPAPMPSSAPRG-PTEPALRRPSSADR 108
P GV G GQ P P EP P P+G P P L
Sbjct: 751 GP-EGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPG 809
Query: 109 PLAP-GPSSSPGAGRAPGAMAS-----PSGSSKATGKPRGRDGRPRREEDDVTPEEK 159
P P GP+ GA +PG + P G+S P GRDG+ + TP EK
Sbjct: 810 PRGPPGPTGEKGAQGSPGVKGATGPVGPPGAS--VSGPPGRDGQQGQTGLRGTPGEK 864
Score = 34.7 bits (78), Expect = 0.086
Identities = 60/225 (26%), Positives = 77/225 (34%), Gaps = 35/225 (15%)
Query: 5 SGRPFSPPWAGRPSGCNLVGA-GRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAV 63
+G P PP P+G + GA G C P + Q GD + + + PG
Sbjct: 610 AGSP-GPPGPVGPAG--IKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGF 666
Query: 64 GASGQQ-RAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGR 122
G G+Q +A E + + P P G T RP + P GP+ G +
Sbjct: 667 GLPGKQGKAGERGLKGQKGDAGNPGDPGTP-GTTG----RPGLSGEPGVQGPAGPKGE-K 720
Query: 123 APGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPG 182
G A PS T GR G+P G E RPG
Sbjct: 721 GDGCTACPSLQGTVTDMA-GRPGQP--------------------GPKGEQGPEGVGRPG 759
Query: 183 RKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGL 227
+ Q G G GV+G G GRGV G PGL
Sbjct: 760 KPG---QPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGL 801
Score = 33.5 bits (75), Expect = 0.19
Identities = 47/170 (27%), Positives = 58/170 (34%), Gaps = 8/170 (4%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPT-EPALRRPSS-ADRPLAPGPSSSPGAG 121
G G+ P P P M +G T P L P +P PG + PGA
Sbjct: 1216 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAE 1275
Query: 122 RAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAP 179
PGAM P G G P G G+P + E G A G+ P
Sbjct: 1276 GEPGAM-GPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGL-PGQPGP 1333
Query: 180 RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAGGSVAGPGLK 228
PG + G DG + G +G G G +G A G G K
Sbjct: 1334 -PGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEK 1382
Score = 31.6 bits (70), Expect = 0.73
Identities = 49/187 (26%), Positives = 60/187 (32%), Gaps = 23/187 (12%)
Query: 48 QGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSAD 107
+G ++ PG VG+ G P + EE P S P GP P
Sbjct: 1006 RGDNSEGDPG----CVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGP--------- 1052
Query: 108 RPLAPGPSSSPGAGRAPG--AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLL 165
P PG SPG G + +G G P G+ G P P K R
Sbjct: 1053 -PGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPP-GQPGYPGATGPPGLPGIKGERGYT 1110
Query: 166 ----EEGSAQPDDGEDAP-RPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG-RGVGAAG 219
E+G P E P PG + G G G +G G G G
Sbjct: 1111 GSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFP 1170
Query: 220 GSVAGPG 226
G V PG
Sbjct: 1171 GKVGSPG 1177
Score = 30.0 bits (66), Expect = 2.1
Identities = 58/215 (26%), Positives = 71/215 (33%), Gaps = 44/215 (20%)
Query: 39 QAGDSDCLGQGRRAQRRPGPG-VSAVGASGQQRAPE--SNERPAEEPTPAPMPSSAPRGP 95
+ GD G + R PG + +G GQ+ P E A EP P
Sbjct: 403 EKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGP----------- 451
Query: 96 TEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGK--PRGRDGRP--RREE 151
P L P P PG P PG GSS GK P G+ G+P + E+
Sbjct: 452 --PGLPGPPGIGLPGTPGDPGGP-----PGPKGD-KGSSGIPGKEGPGGKPGKPGVKGEK 503
Query: 152 DD-----VTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRG------VSDA 200
D T E + G P P P R + G Q +G S
Sbjct: 504 GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVV 563
Query: 201 GA-------GVRGCRGCRGRGVGAAGGSVAGPGLK 228
GA G G G G G+ G PGLK
Sbjct: 564 GAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLK 598
Score = 28.1 bits (61), Expect = 8.1
Identities = 41/164 (25%), Positives = 53/164 (32%), Gaps = 22/164 (13%)
Query: 58 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSS 117
PG G G+ P P S P GP PA + + + P P P+ S
Sbjct: 581 PGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGE-PCEPCPALS 639
Query: 118 ---PGAGRAPGAMASPSGSSKATGKPR-GRDGRPRREEDDVTPEEKRLRLLLEEGSAQPD 173
G R A+ PSG G P G G+ + + +K
Sbjct: 640 NLQDGDVRVV-ALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQK-------------- 684
Query: 174 DGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGA 217
DA PG T TG G G G +G +G G A
Sbjct: 685 --GDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTA 726
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 47.0 bits (110), Expect = 2e-05
Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 20/229 (8%)
Query: 20 CNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSA---VGASGQQ-RAPESN 75
C + RR R W + P A + + G + P PG + +G SG+ R+P+S+
Sbjct: 30 CGVASRWRRRRPWLD---PAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSS 86
Query: 76 ERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSK 135
+ P P +P +P GP P PS P P P +P + S S S
Sbjct: 87 ---SPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSP 143
Query: 136 ATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGR 195
P P V+ + + L G + P + P G + G
Sbjct: 144 GLPPP-----APPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGG- 197
Query: 196 GVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSR 244
GAG R C C R G G + G K +R +R+ + S R
Sbjct: 198 ----PGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCR 242
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 3 TLSGRPFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSA 62
T G P AG + + G R+ P R P LG G RA RRPG
Sbjct: 124 TARGSPAGVERAGGATAASSAGT----RSVPARRLPPPCGGTSLGAGSRALRRPG----- 174
Query: 63 VGASGQQRAPESNERPAEEPTP-APMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAG 121
++ R+P S+ R A P P AP P + P A+ P +A +AP P + GA
Sbjct: 175 --SAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAP 232
Query: 122 RAP--GAMASP 130
A G +A+P
Sbjct: 233 AAAFRGWVAAP 243
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 22/136 (16%)
Query: 27 RRCRAWPERAWPQAGDSDCLGQGRRA--QRRPGPGVSAVGASGQQRAPESNERPAEEPTP 84
R RA RA P G+GR A +R P PG + +G +RA + +
Sbjct: 89 RASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRS 148
Query: 85 APMPSSAPR------GPTEPALRRPSSADRPLAPGPS------SSPGAGR--APG----- 125
P P G ALRRP SA P +P S PGA R APG
Sbjct: 149 VPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVG 208
Query: 126 -AMASPSGSSKATGKP 140
A+A+P ++ + P
Sbjct: 209 FAVAAPPAAAASVAPP 224
Score = 37.0 bits (84), Expect = 0.017
Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 17 PSGCNLVGAGRRCRAWP-ERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESN 75
P G +GAG R P A P++ S RR PGPG GA G
Sbjct: 157 PCGGTSLGAGSRALRRPGSAALPRSPSSS-----RRWAAMPGPGAPRPGAPGTW------ 205
Query: 76 ERPAEEPTPAPMPSSAPRGPTEPALR-RPSSADR--PLAPGPSSSPGAGRAPGA 126
P AP ++A P PA+ P++A R AP P +PG AP +
Sbjct: 206 --PVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 257
Score = 35.0 bits (79), Expect = 0.066
Identities = 39/146 (26%), Positives = 53/146 (36%), Gaps = 23/146 (15%)
Query: 88 PSSAPRGPTEPALRRPSSA---DRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRD 144
P+ A RG + P + +SA + P A GP P A G P+ +S+A G+ G
Sbjct: 45 PAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWG---PPARASRAAGRRAGPA 101
Query: 145 GRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGV 204
G P R R R S P +P G + G S AG
Sbjct: 102 GPPCRAPG-------RGRAAATRRSPAPGTARGSP------AGVERAGGATAASSAGTRS 148
Query: 205 RGCR----GCRGRGVGAAGGSVAGPG 226
R C G +GA ++ PG
Sbjct: 149 VPARRLPPPCGGTSLGAGSRALRRPG 174
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 47.0 bits (110), Expect = 2e-05
Identities = 52/186 (27%), Positives = 67/186 (36%), Gaps = 25/186 (13%)
Query: 53 QRRPGPGVSAVGASGQQRAPESNERPAEEPTP-APMPSSAPRGPTEPALRRPSSADRPLA 111
Q P P + QQ+ P + P ++P P P P P +P S+ +A
Sbjct: 53 QSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVA 112
Query: 112 PGPSSSPGAGRAPGAMAS-PSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
GP +PG G AP A +S P + +G P G P TP G+
Sbjct: 113 QGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGP-------TPTPPPAVTSAPPGAP 165
Query: 171 QPDDGEDAPRPGRKETGTQTGG--------DGRGVS-DAGAGVRGCRGCRGRGVGAAGGS 221
P P G T Q GG G G G G G +G + G GG
Sbjct: 166 PP----TPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGG- 220
Query: 222 VAGPGL 227
GPGL
Sbjct: 221 --GPGL 224
Score = 37.7 bits (86), Expect = 0.010
Identities = 34/114 (29%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 38 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMP----SSAPR 93
PQ + QG G A ++ P S P P P P P +SAP
Sbjct: 103 PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPP 162
Query: 94 G---PTEPALRRPSSADRPLAPGPSSSPGA--GRAPGAMASPSGSSKATGKPRG 142
G PT P+ P++ P A GP P A G PG P GK G
Sbjct: 163 GAPPPTPPSSGVPTTP--PQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG 214
Score = 33.9 bits (76), Expect = 0.15
Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 47 GQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPT-------PAPMPSSAPRGPTEPA 99
G G P P V++ P S+ P P PA +P P P
Sbjct: 144 GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG 203
Query: 100 LRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRG 142
P P P P PG PG P + G+PRG
Sbjct: 204 PGGPKGGKMPGGPKPGGGPGLS-TPG--GHPKPPHRGGGEPRG 243
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 123
G S +RA + RP + S + P +PA R S+ PLA GPSS AG
Sbjct: 281 GPSDTKRADVAGPRPCQR-------SLSVLSPRQPAQNREST---PLASGPSSFQRAGSV 330
Query: 124 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 183
+ + S R +DG P+ +TP L A G + P
Sbjct: 331 RDRVHKFTSDSPMAA--RLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGP-- 386
Query: 184 KETGTQTGGDGRGVSDAGAGVRGC---RGCRGRGVGA------AGGSVA 223
+T ++ + RGV+ A +R C G RGRG+ A AGG VA
Sbjct: 387 SDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVA 435
Score = 34.3 bits (77), Expect = 0.11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 72 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPS 131
P S P+ +P P+S P P EPA + +A+ P +P P SP +P SP+
Sbjct: 195 PGSTSSSPASPSSSPTPAS-PEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPT 253
Score = 32.3 bits (72), Expect = 0.43
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 69 QRAPESNERPAEEPTPAPMPSS-----------APRGPTEPALRRPSSADRPLAPGPSSS 117
+R + + +PTP P +S AP G T + PSS+ P +P P
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 118 PG-----AGRAPGAMASPSGSSKAT 137
P PG+ P K T
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTT 244
Score = 29.6 bits (65), Expect = 2.8
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 56 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS 115
PG S+ + P S E P EP A ++ G EP P S + +P P
Sbjct: 195 PGSTSSSPASPSSSPTPASPEPPL-EPAEAQCLTAEVPGSPEP----PPSPPKTTSPEPQ 249
Query: 116 SSPGAGRAPG-----AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
SP G ++ P + A RG R + P ++ L +L A
Sbjct: 250 ESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPA 309
Query: 171 Q 171
Q
Sbjct: 310 Q 310
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 47.0 bits (110), Expect = 2e-05
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 123
G S +RA + RP + S + P +PA R S+ PLA GPSS AG
Sbjct: 281 GPSDTKRADVAGPRPCQR-------SLSVLSPRQPAQNREST---PLASGPSSFQRAGSV 330
Query: 124 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 183
+ + S R +DG P+ +TP L A G + P
Sbjct: 331 RDRVHKFTSDSPMAA--RLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGP-- 386
Query: 184 KETGTQTGGDGRGVSDAGAGVRGC---RGCRGRGVGA------AGGSVA 223
+T ++ + RGV+ A +R C G RGRG+ A AGG VA
Sbjct: 387 SDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVA 435
Score = 34.3 bits (77), Expect = 0.11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 72 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPS 131
P S P+ +P P+S P P EPA + +A+ P +P P SP +P SP+
Sbjct: 195 PGSTSSSPASPSSSPTPAS-PEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPT 253
Score = 32.3 bits (72), Expect = 0.43
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 69 QRAPESNERPAEEPTPAPMPSS-----------APRGPTEPALRRPSSADRPLAPGPSSS 117
+R + + +PTP P +S AP G T + PSS+ P +P P
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 118 PG-----AGRAPGAMASPSGSSKAT 137
P PG+ P K T
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTT 244
Score = 29.6 bits (65), Expect = 2.8
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 56 PGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS 115
PG S+ + P S E P EP A ++ G EP P S + +P P
Sbjct: 195 PGSTSSSPASPSSSPTPASPEPPL-EPAEAQCLTAEVPGSPEP----PPSPPKTTSPEPQ 249
Query: 116 SSPGAGRAPG-----AMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSA 170
SP G ++ P + A RG R + P ++ L +L A
Sbjct: 250 ESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPA 309
Query: 171 Q 171
Q
Sbjct: 310 Q 310
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 47.0 bits (110), Expect = 2e-05
Identities = 51/169 (30%), Positives = 69/169 (40%), Gaps = 18/169 (10%)
Query: 65 ASGQQRAPESNERPAEEPTPAPMPSS-APRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 123
A R P +R A+ P P S + P +PA R S+ PLA GPSS AG
Sbjct: 275 AQSPHRGPSDTKR-ADVAGPRPCQRSLSVLSPRQPAQNREST---PLASGPSSFQRAGSV 330
Query: 124 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 183
+ + S R +DG P+ +TP L A G + P
Sbjct: 331 RDRVHKFTSDSPMAA--RLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGP-- 386
Query: 184 KETGTQTGGDGRGVSDAGAGVRGC---RGCRGRGVGA------AGGSVA 223
+T ++ + RGV+ A +R C G RGRG+ A AGG VA
Sbjct: 387 SDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVA 435
Score = 34.3 bits (77), Expect = 0.11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 72 PESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPS 131
P S P+ +P P+S P P EPA + +A+ P +P P SP +P SP+
Sbjct: 195 PGSTSSSPASPSSSPTPAS-PEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPT 253
Score = 32.3 bits (72), Expect = 0.43
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 69 QRAPESNERPAEEPTPAPMPSS-----------APRGPTEPALRRPSSADRPLAPGPSSS 117
+R + + +PTP P +S AP G T + PSS+ P +P P
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLE 219
Query: 118 PG-----AGRAPGAMASPSGSSKAT 137
P PG+ P K T
Sbjct: 220 PAEAQCLTAEVPGSPEPPPSPPKTT 244
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.6 bits (109), Expect = 2e-05
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 40/220 (18%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G R+ R P G AP S R P + S PR PT + D
Sbjct: 44 GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDL 103
Query: 109 PLAPGPSSSPG------------AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTP 156
P P P + G G G + G+ + +GK RG RP+R
Sbjct: 104 PRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQR------- 156
Query: 157 EEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC-RGCRGRGV 215
R RL G P G APR + G + GV G RG G
Sbjct: 157 --VRSRL---AGLGAPRGGAAAPRGWGGQ-----GAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 216 GAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLG 255
G GG+ P RAR S RP R+ LLG
Sbjct: 207 GGGGGARPSP----------PRARQPPSGRPRPRRTRLLG 236
Score = 35.4 bits (80), Expect = 0.050
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 52 AQRRPGPGVSAVGASGQQRAPESNERPAEEPTP--APMPSSAPRGPTEPALRRPSSADRP 109
A R G G G + P + + P+ P P + SA R AL R RP
Sbjct: 197 ALRGGGGGSEGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRP 256
Query: 110 LAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 148
A +SS G G A A+ + R DGR R
Sbjct: 257 HAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.6 bits (109), Expect = 2e-05
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 40/220 (18%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G R+ R P G AP S R P + S PR PT + D
Sbjct: 44 GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDL 103
Query: 109 PLAPGPSSSPG------------AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTP 156
P P P + G G G + G+ + +GK RG RP+R
Sbjct: 104 PRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQR------- 156
Query: 157 EEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC-RGCRGRGV 215
R RL G P G APR + G + GV G RG G
Sbjct: 157 --VRSRL---AGLGAPRGGAAAPRGWGGQ-----GAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 216 GAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLG 255
G GG+ P RAR S RP R+ LLG
Sbjct: 207 GGGGGARPSP----------PRARQPPSGRPRPRRTRLLG 236
Score = 35.4 bits (80), Expect = 0.050
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 52 AQRRPGPGVSAVGASGQQRAPESNERPAEEPTP--APMPSSAPRGPTEPALRRPSSADRP 109
A R G G G + P + + P+ P P + SA R AL R RP
Sbjct: 197 ALRGGGGGSEGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRP 256
Query: 110 LAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 148
A +SS G G A A+ + R DGR R
Sbjct: 257 HAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 46.6 bits (109), Expect = 2e-05
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 40/220 (18%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G R+ R P G AP S R P + S PR PT + D
Sbjct: 44 GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDL 103
Query: 109 PLAPGPSSSPG------------AGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTP 156
P P P + G G G + G+ + +GK RG RP+R
Sbjct: 104 PRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQR------- 156
Query: 157 EEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC-RGCRGRGV 215
R RL G P G APR + G + GV G RG G
Sbjct: 157 --VRSRL---AGLGAPRGGAAAPRGWGGQ-----GAERLGVHQPGLPTHAALRGGGGGSE 206
Query: 216 GAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLPLLG 255
G GG+ P RAR S RP R+ LLG
Sbjct: 207 GGGGGARPSP----------PRARQPPSGRPRPRRTRLLG 236
Score = 35.4 bits (80), Expect = 0.050
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 52 AQRRPGPGVSAVGASGQQRAPESNERPAEEPTP--APMPSSAPRGPTEPALRRPSSADRP 109
A R G G G + P + + P+ P P + SA R AL R RP
Sbjct: 197 ALRGGGGGSEGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRP 256
Query: 110 LAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 148
A +SS G G A A+ + R DGR R
Sbjct: 257 HAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRAR 295
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/194 (25%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS---APRGPTEPALRRPSS 105
G R QR P GA G + P E P P + P+GP P P
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP----PGK 813
Query: 106 ADRPLAPGPSSSPG-----AGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEE 158
P PG G P + P G++ TG RG G P + P
Sbjct: 814 DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGT 873
Query: 159 KRLRLLLEEGSAQPDDGEDAPR-----PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG- 212
+ G+D P PG + GG G ++ +G G G G
Sbjct: 874 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGE 933
Query: 213 RGVGAAGGSVAGPG 226
RG +GG + PG
Sbjct: 934 RGAAGSGGPIGPPG 947
Score = 42.7 bits (99), Expect = 3e-04
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 45/202 (22%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA------------ 111
G G Q P + E PM P GP PA P+ AD P
Sbjct: 1067 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA--GPNGADGPQGPPGGVGNLGPPG 1124
Query: 112 ----PGPSSSPGAGRAPGAMA-----------------SPSGSSKATGK--PRGRDGRPR 148
PG S SPG PG P G TG P+G G
Sbjct: 1125 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVG 1184
Query: 149 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 208
D P E R + A+ D GED PG+ + TG +G G G
Sbjct: 1185 FPGDPGPPGEGGPR---GQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSP 1240
Query: 209 GCRGR--GVGAAG--GSVAGPG 226
G GR G GA G G++ PG
Sbjct: 1241 GSEGRQGGKGAKGDPGAIGAPG 1262
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/218 (25%), Positives = 72/218 (33%), Gaps = 23/218 (10%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G R P ++G G+ P P + P P + P G P +P
Sbjct: 539 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ-GKPGLPGM 597
Query: 109 PLAPGPSSSPGAGRAPGAMAS--PSGSSKATGKP-----------RGRDGRPRREEDDVT 155
P + GP PG PG + PSG G P RG G + +D
Sbjct: 598 PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGF 657
Query: 156 PEEK---RLRLLLEEGSAQPDDGEDAPRPGRKETGT--QTGGDGRGVSDAGAGVRGCRGC 210
P K ++ E GED P + TG G G GV G G
Sbjct: 658 PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGY 717
Query: 211 RGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPR 248
GR GS+ PG + + AR S + PR
Sbjct: 718 PGR--QGPKGSLGFPGFPGASGE--KGARGLSGKSGPR 751
Score = 32.0 bits (71), Expect = 0.56
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 41/183 (22%)
Query: 58 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS-- 115
PG+ G G + P + P P+ RGP A P S P PG S
Sbjct: 307 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRA-GLPGSDGAPGPPGTSLM 365
Query: 116 -----SSPGAGRAPG-----------------AMASPSGSSKATGKPR--GRDGRP--RR 149
S G + P A+ P G TG+P G+ G P +
Sbjct: 366 LPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKG 425
Query: 150 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 209
E D+ P+ R +G P PG+ + G DG GV+G RG
Sbjct: 426 ESGDLGPQGPRG----PQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKGDRG 473
Query: 210 CRG 212
G
Sbjct: 474 FDG 476
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/194 (25%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS---APRGPTEPALRRPSS 105
G R QR P GA G + P E P P + P+GP P P
Sbjct: 737 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP----PGK 792
Query: 106 ADRPLAPGPSSSPG-----AGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEE 158
P PG G P + P G++ TG RG G P + P
Sbjct: 793 DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGT 852
Query: 159 KRLRLLLEEGSAQPDDGEDAPR-----PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG- 212
+ G+D P PG + GG G ++ +G G G G
Sbjct: 853 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGE 912
Query: 213 RGVGAAGGSVAGPG 226
RG +GG + PG
Sbjct: 913 RGAAGSGGPIGPPG 926
Score = 42.7 bits (99), Expect = 3e-04
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 45/202 (22%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA------------ 111
G G Q P + E PM P GP PA P+ AD P
Sbjct: 1046 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA--GPNGADGPQGPPGGVGNLGPPG 1103
Query: 112 ----PGPSSSPGAGRAPGAMA-----------------SPSGSSKATGK--PRGRDGRPR 148
PG S SPG PG P G TG P+G G
Sbjct: 1104 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVG 1163
Query: 149 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 208
D P E R + A+ D GED PG+ + TG +G G G
Sbjct: 1164 FPGDPGPPGEGGPR---GQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSP 1219
Query: 209 GCRGR--GVGAAG--GSVAGPG 226
G GR G GA G G++ PG
Sbjct: 1220 GSEGRQGGKGAKGDPGAIGAPG 1241
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/218 (25%), Positives = 72/218 (33%), Gaps = 23/218 (10%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G R P ++G G+ P P + P P + P G P +P
Sbjct: 518 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ-GKPGLPGM 576
Query: 109 PLAPGPSSSPGAGRAPGAMAS--PSGSSKATGKP-----------RGRDGRPRREEDDVT 155
P + GP PG PG + PSG G P RG G + +D
Sbjct: 577 PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGF 636
Query: 156 PEEK---RLRLLLEEGSAQPDDGEDAPRPGRKETGT--QTGGDGRGVSDAGAGVRGCRGC 210
P K ++ E GED P + TG G G GV G G
Sbjct: 637 PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGY 696
Query: 211 RGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPR 248
GR GS+ PG + + AR S + PR
Sbjct: 697 PGR--QGPKGSLGFPGFPGASGE--KGARGLSGKSGPR 730
Score = 32.0 bits (71), Expect = 0.56
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 41/183 (22%)
Query: 58 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS-- 115
PG+ G G + P + P P+ RGP A P S P PG S
Sbjct: 286 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRA-GLPGSDGAPGPPGTSLM 344
Query: 116 -----SSPGAGRAPG-----------------AMASPSGSSKATGKPR--GRDGRP--RR 149
S G + P A+ P G TG+P G+ G P +
Sbjct: 345 LPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKG 404
Query: 150 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 209
E D+ P+ R +G P PG+ + G DG GV+G RG
Sbjct: 405 ESGDLGPQGPRG----PQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKGDRG 452
Query: 210 CRG 212
G
Sbjct: 453 FDG 455
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/194 (25%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS---APRGPTEPALRRPSS 105
G R QR P GA G + P E P P + P+GP P P
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP----PGK 899
Query: 106 ADRPLAPGPSSSPG-----AGRAPGAMASPSGSSKATGK--PRGRDGRPRREEDDVTPEE 158
P PG G P + P G++ TG RG G P + P
Sbjct: 900 DGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGT 959
Query: 159 KRLRLLLEEGSAQPDDGEDAPR-----PGRKETGTQTGGDGRGVSDAGAGVRGCRGCRG- 212
+ G+D P PG + GG G ++ +G G G G
Sbjct: 960 AGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGE 1019
Query: 213 RGVGAAGGSVAGPG 226
RG +GG + PG
Sbjct: 1020 RGAAGSGGPIGPPG 1033
Score = 42.7 bits (99), Expect = 3e-04
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 45/202 (22%)
Query: 64 GASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLA------------ 111
G G Q P + E PM P GP PA P+ AD P
Sbjct: 1153 GPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPA--GPNGADGPQGPPGGVGNLGPPG 1210
Query: 112 ----PGPSSSPGAGRAPGAMA-----------------SPSGSSKATGK--PRGRDGRPR 148
PG S SPG PG P G TG P+G G
Sbjct: 1211 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVG 1270
Query: 149 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 208
D P E R + A+ D GED PG+ + TG +G G G
Sbjct: 1271 FPGDPGPPGEGGPR---GQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSP 1326
Query: 209 GCRGR--GVGAAG--GSVAGPG 226
G GR G GA G G++ PG
Sbjct: 1327 GSEGRQGGKGAKGDPGAIGAPG 1348
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/218 (25%), Positives = 72/218 (33%), Gaps = 23/218 (10%)
Query: 49 GRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADR 108
G R P ++G G+ P P + P P + P G P +P
Sbjct: 625 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQ-GKPGLPGM 683
Query: 109 PLAPGPSSSPGAGRAPGAMAS--PSGSSKATGKP-----------RGRDGRPRREEDDVT 155
P + GP PG PG + PSG G P RG G + +D
Sbjct: 684 PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGF 743
Query: 156 PEEK---RLRLLLEEGSAQPDDGEDAPRPGRKETGT--QTGGDGRGVSDAGAGVRGCRGC 210
P K ++ E GED P + TG G G GV G G
Sbjct: 744 PGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGY 803
Query: 211 RGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPR 248
GR GS+ PG + + AR S + PR
Sbjct: 804 PGR--QGPKGSLGFPGFPGASGE--KGARGLSGKSGPR 837
Score = 32.0 bits (71), Expect = 0.56
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 41/183 (22%)
Query: 58 PGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPS-- 115
PG+ G G + P + P P+ RGP A P S P PG S
Sbjct: 393 PGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRA-GLPGSDGAPGPPGTSLM 451
Query: 116 -----SSPGAGRAPG-----------------AMASPSGSSKATGKPR--GRDGRP--RR 149
S G + P A+ P G TG+P G+ G P +
Sbjct: 452 LPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKG 511
Query: 150 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 209
E D+ P+ R +G P PG+ + G DG GV+G RG
Sbjct: 512 ESGDLGPQGPRG----PQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKGDRG 559
Query: 210 CRG 212
G
Sbjct: 560 FDG 562
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.2 bits (108), Expect = 3e-05
Identities = 59/208 (28%), Positives = 74/208 (35%), Gaps = 26/208 (12%)
Query: 8 PFSPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASG 67
P S GR +G GAGRR R R + S RR +RRP P +
Sbjct: 370 PSSQGRGGRAAG----GAGRRRR---RRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRS 422
Query: 68 QQRAPESNE----RPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA 123
RA S++ R A P P P G + A RP A RP + P SPG A
Sbjct: 423 LSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRA-RPASTSP--SPG---A 476
Query: 124 PGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGR 183
G P G S + R PR +P + R R +P +P P +
Sbjct: 477 HGRRGGPEGKSSS----RSPGPHPRSWSSSRSPSKSRSR----SAEKRPHSPSRSPSP-K 527
Query: 184 KETGTQTGGDGRGVSDAGAGVRGCRGCR 211
K G+GR R R R
Sbjct: 528 KPLSRDKDGEGRARHSEAEATRARRRSR 555
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/218 (24%), Positives = 74/218 (33%), Gaps = 22/218 (10%)
Query: 33 PERAWPQAGDSDCLGQGRRAQ--RRPGPGVSAVGASGQQRAPESNERPAE--EPTPAPMP 88
P R P+ D +R+ R P P + S Q+ A P A P
Sbjct: 275 PSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSP 334
Query: 89 SSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPR 148
P P+ P D+ A P+ +P ++PS + G+ G GR R
Sbjct: 335 PDKPSSPS------PRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRG-GRAAGGAGRRR 387
Query: 149 REEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCR 208
R +R R SA G PRP +++ R SD+G+G R
Sbjct: 388 R-------RRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSG----R 436
Query: 209 GCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRP 246
G G G G K ER R + +S P
Sbjct: 437 GAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSP 474
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 46.2 bits (108), Expect = 3e-05
Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 38 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTE 97
P A DSD A +P P A AS + S++ P PRG
Sbjct: 229 PSASDSDSKADSDGA--KPEPVAMARSASSSSSSSSSSDSDVSVKKP-------PRG--- 276
Query: 98 PALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS--------KATGKPRGRDGRPRR 149
R+P A++PL P R P + +S S S K + R R+ RR
Sbjct: 277 ---RKP--AEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISEWKRRDEARRRELEARR 331
Query: 150 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 209
+ +E+ LR L E+ + + + G E G+ G G + + V+ RG
Sbjct: 332 RRE----QEEELRRLREQEKEEKERRRERADRGEAERGSG-GSSGDELREDDEPVKK-RG 385
Query: 210 CRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQ 250
+GRG G S + P +L E + + SS P R+
Sbjct: 386 RKGRGRGPPSSSDSEPEAELEREAKKSAKKPQSSSTEPARK 426
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 46.2 bits (108), Expect = 3e-05
Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 31/221 (14%)
Query: 38 PQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTE 97
P A DSD A +P P A AS + S++ P PRG
Sbjct: 229 PSASDSDSKADSDGA--KPEPVAMARSASSSSSSSSSSDSDVSVKKP-------PRG--- 276
Query: 98 PALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSS--------KATGKPRGRDGRPRR 149
R+P A++PL P R P + +S S S K + R R+ RR
Sbjct: 277 ---RKP--AEKPLPKPRGRKPKPERPPSSSSSDSDSDEVDRISEWKRRDEARRRELEARR 331
Query: 150 EEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRG 209
+ +E+ LR L E+ + + + G E G+ G G + + V+ RG
Sbjct: 332 RRE----QEEELRRLREQEKEEKERRRERADRGEAERGSG-GSSGDELREDDEPVKK-RG 385
Query: 210 CRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQ 250
+GRG G S + P +L E + + SS P R+
Sbjct: 386 RKGRGRGPPSSSDSEPEAELEREAKKSAKKPQSSSTEPARK 426
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 45.8 bits (107), Expect = 4e-05
Identities = 63/223 (28%), Positives = 82/223 (36%), Gaps = 26/223 (11%)
Query: 53 QRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPM------PSSAPRGPTEPALRRPSSA 106
Q + +G+SG R P S P P P P P+S+PR P +
Sbjct: 56 QSKQKADTETIGSSGGSRGP-SPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYT 114
Query: 107 DRPLAPGPSSSPGAG--RAPGAMASPSGSSKATGKPRGRDGRPRREED---DVTPEEKRL 161
P GP+ GAG RA G + + + ++ PR R RR PE +
Sbjct: 115 SAPRGSGPTYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAA 174
Query: 162 RLLLEEGSAQPDDGED-----APRPGRKETGTQTGGDGRG------VSDAGAGVRG-CRG 209
R L SA+ P PG TG + G G + G+ RG R
Sbjct: 175 RQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARH 234
Query: 210 CRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSSRRPPRRQLP 252
RG V AA + GL +L RS S RPP R P
Sbjct: 235 LRGGSVAAAAAARC-LGLSPPGRSRLFSPRS-SLARPPLRFPP 275
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 45.8 bits (107), Expect = 4e-05
Identities = 57/194 (29%), Positives = 69/194 (35%), Gaps = 38/194 (19%)
Query: 78 PAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRA-------PGAMASP 130
P E PAP P GPT P R P+ R G + S G+G A PG SP
Sbjct: 201 PQETAAPAPQP-----GPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSP 255
Query: 131 SGSS------KATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRK 184
+ + +A G GR RPR E E + L G D R G
Sbjct: 256 APPAPELREGRAPGSTAGR--RPRPREPQAAEESGCATVGLRRG--------DCDRAGSS 305
Query: 185 ETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLK---LVTERQLRRARSD 241
+ T G+G R G G G A G + PG + V LR +
Sbjct: 306 QP-PATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGE 364
Query: 242 SSRR------PPRR 249
SRR PPRR
Sbjct: 365 GSRRGLQLTPPPRR 378
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,161,205
Number of Sequences: 37866
Number of extensions: 1123586
Number of successful extensions: 17663
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 1875
Number of HSP's that attempted gapping in prelim test: 8975
Number of HSP's gapped (non-prelim): 7770
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.