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Search of human proteins with 239755567
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755567 PREDICTED: similar to protein phosphatase 1
regulatory subunit 14B [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755567 PREDICTED: similar to protein phosphatase 1 regulat... 299 5e-82
gi|20162550 protein phosphatase 1 regulatory subunit 14B [Homo s... 299 5e-82
gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens] 216 4e-57
gi|19311006 protein phosphatase 1, regulatory (inhibitor) subuni... 166 6e-42
gi|15147250 protein phosphatase 1, regulatory (inhibitor) subuni... 95 2e-20
gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform... 76 1e-14
gi|95147333 phospholipase C, beta 2 [Homo sapiens] 40 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.003
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 37 0.008
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 36 0.010
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 36 0.010
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 36 0.010
gi|194306647 protein phosphatase 1, regulatory subunit 14D isofo... 36 0.010
gi|102469037 jun D proto-oncogene [Homo sapiens] 35 0.023
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.023
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.023
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.023
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 35 0.023
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 35 0.023
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 35 0.023
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 35 0.023
gi|4505531 oxysterol binding protein [Homo sapiens] 35 0.029
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 34 0.038
gi|122937219 F-box protein 41 [Homo sapiens] 34 0.038
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 34 0.050
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 34 0.050
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 34 0.050
gi|130977756 transmembrane anterior posterior transformation 1 [... 34 0.050
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 34 0.050
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 34 0.050
>gi|239755567 PREDICTED: similar to protein phosphatase 1 regulatory
subunit 14B [Homo sapiens]
Length = 147
Score = 299 bits (766), Expect = 5e-82
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60
MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY
Sbjct: 1 MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60
Query: 61 DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120
DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC
Sbjct: 61 DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120
Query: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147
YKPTEAFISGLLDKIRGMQKLSTPQKK
Sbjct: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147
>gi|20162550 protein phosphatase 1 regulatory subunit 14B [Homo
sapiens]
Length = 147
Score = 299 bits (766), Expect = 5e-82
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60
MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY
Sbjct: 1 MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60
Query: 61 DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120
DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC
Sbjct: 61 DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120
Query: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147
YKPTEAFISGLLDKIRGMQKLSTPQKK
Sbjct: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147
>gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens]
Length = 686
Score = 216 bits (551), Expect = 4e-57
Identities = 107/117 (91%), Positives = 111/117 (94%)
Query: 31 QSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEEWILEQLTRLYDCQEEEI 90
++PPGAAGEGPG ADDEGPVRRQGKVT+KYD KELRK LNLEEWILEQLTRLYDCQEEEI
Sbjct: 570 RAPPGAAGEGPGCADDEGPVRRQGKVTIKYDPKELRKHLNLEEWILEQLTRLYDCQEEEI 629
Query: 91 PELEIDVDELLDMESDDARAARVKELLVDCYKPTEAFISGLLDKIRGMQKLSTPQKK 147
ELEIDVDELLDMESDDA A+RVKELLVDCYKPTEAFISGLLDKIR MQKLSTPQKK
Sbjct: 630 SELEIDVDELLDMESDDAWASRVKELLVDCYKPTEAFISGLLDKIRAMQKLSTPQKK 686
>gi|19311006 protein phosphatase 1, regulatory (inhibitor) subunit
14C [Homo sapiens]
Length = 165
Score = 166 bits (420), Expect = 6e-42
Identities = 86/151 (56%), Positives = 106/151 (70%), Gaps = 23/151 (15%)
Query: 20 GSGGPGPRVYFQSPPGAAGEGPGGA-------DDEGPV----------------RRQGKV 56
G+ G G RV+FQSP G AG PG + +D PV +QGKV
Sbjct: 13 GASGGGARVFFQSPRGGAGGSPGSSSGSGSSREDSAPVATAAAAGQVQQQQQRRHQQGKV 72
Query: 57 TVKYDRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKEL 116
TVKYDRKELRKRL LEEWI+EQL +LY C+EEE+PE+EID+D+LLD +SD+ RA++++E
Sbjct: 73 TVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPEVEIDIDDLLDADSDEERASKLQEA 132
Query: 117 LVDCYKPTEAFISGLLDKIRGMQKLSTPQKK 147
LVDCYKPTE FI LL +IRGM+KLS PQKK
Sbjct: 133 LVDCYKPTEEFIKELLSRIRGMRKLSPPQKK 163
>gi|15147250 protein phosphatase 1, regulatory (inhibitor) subunit
14A [Homo sapiens]
Length = 147
Score = 94.7 bits (234), Expect = 2e-20
Identities = 49/116 (42%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 25 GPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEEWILEQLTRLYD 84
G RV + + GPGG+ G +R +VTVKYDR+EL++RL++E+WI +L LY
Sbjct: 7 GKRVLSKLQSPSRARGPGGSPG-GLQKRHARVTVKYDRRELQRRLDVEKWIDGRLEELYR 65
Query: 85 CQEEEIPELEIDVDELLDMESDDARAARVKELLVDCYKPTEAFISGLLDKIRGMQK 140
E ++P+ EI++DELL++ES++ R+ +++ LL C KP E FI LL K++G+ +
Sbjct: 66 GMEADMPD-EINIDELLELESEEERSRKIQGLLKSCGKPVEDFIQELLAKLQGLHR 120
>gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform 1
[Homo sapiens]
Length = 145
Score = 75.9 bits (185), Expect = 1e-14
Identities = 38/97 (39%), Positives = 70/97 (72%), Gaps = 4/97 (4%)
Query: 51 RRQGKVTVKYDRKELRKRLNLEEWILEQLTRLYDCQEEEIP-ELEIDVDELLDMESDDAR 109
RR ++TVKYDR +L++ L +E+W+ Q+ L+ Q++ P E EID++ L+D+ +++ +
Sbjct: 52 RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF--QDQATPSEPEIDLEALMDLSTEEQK 109
Query: 110 AARVKELLVDCYKPTEAFISGLLDKIRGMQKLSTPQK 146
+++ +L +C +PTEAFIS LL +++ +++LS PQK
Sbjct: 110 T-QLEAILGNCPRPTEAFISELLSQLKKLRRLSRPQK 145
>gi|95147333 phospholipase C, beta 2 [Homo sapiens]
Length = 1185
Score = 39.7 bits (91), Expect = 0.001
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 30/153 (19%)
Query: 1 MADSGTAGGAALAAPAPGPGSGGPGPRVY--FQSPPGAAGEGPGGADDEGPVRRQGKVTV 58
+A+ G G + A GPG G R +S A GEGP G D G+V
Sbjct: 931 LAELGPPGVGGVGACKLGPGKGSRKKRSLPREESAGAAPGEGPEGVD--------GRV-- 980
Query: 59 KYDRKELRKRLNLEEWILEQLTRLYDC----QEEEIPELEIDVDELLDMESDDARAARVK 114
+EL+ RL LE +L Q Y+C +E+ + E + +++++ + + +AA +K
Sbjct: 981 ----RELKDRLELE--LLRQGEEQYECVLKRKEQHVAE---QISKMMEL-AREKQAAELK 1030
Query: 115 ELLVDCYKPTEAFISGL----LDKIRGMQKLST 143
L T+ L L++I+GM K++T
Sbjct: 1031 ALKETSENDTKEMKKKLETKRLERIQGMTKVTT 1063
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.003
Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 8 GGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPG-GADDEGPVR 51
GG+A AAPAP P +GGP V Q PGAA P G E P R
Sbjct: 306 GGSAGAAPAPAPAAGGPA-GVSGQPGPGAAAAAPAPGVKAESPKR 349
Score = 34.7 bits (78), Expect = 0.029
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 SGTAGGAALAAPAPGPGSG-GPGPRVYFQSPPGAAGEGPGGA 44
+G A AA A P PGPG G GPGP + PGAA G A
Sbjct: 161 AGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA 202
Score = 30.4 bits (67), Expect = 0.55
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 4 SGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGP 49
SG+ GAA A PA P G PG PP A PGG + P
Sbjct: 64 SGSPAGAAGAGPA-APAEGAPGAA---PEPPPAGRARPGGGGPQRP 105
Score = 29.3 bits (64), Expect = 1.2
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 7 AGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGP 49
A GA AAPA G P P P G A G GG GP
Sbjct: 70 AAGAGPAAPAEGAPGAAPEP-----PPAGRARPGGGGPQRPGP 107
Score = 27.7 bits (60), Expect = 3.6
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 7 AGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGP 49
AG A A PA GPGP P G GPG GP
Sbjct: 155 AGPAKPAGPAALAARAGPGP-----GPGPGPGPGPGPGKPAGP 192
Score = 26.9 bits (58), Expect = 6.1
Identities = 16/46 (34%), Positives = 17/46 (36%)
Query: 10 AALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
AA A P P GP + AG GPG GP GK
Sbjct: 143 AAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188
Score = 26.6 bits (57), Expect = 8.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 ADSGTAGGAALAAPAPGPGS--GGPGPRVYFQSPPGAAGEGPGGA 44
A + AGG A + PGPG+ P P V +SP P A
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA 358
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 36.6 bits (83), Expect = 0.008
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 14 APAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEE 73
AP PGPGSG PG + + PG PG E P K V+ +E K L+
Sbjct: 83 APGPGPGSGAPGSQEE-EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQN 141
Query: 74 WILEQL 79
+ +Q+
Sbjct: 142 EVEKQM 147
Score = 32.7 bits (73), Expect = 0.11
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 7 AGGAALAAPAPGPGSGGPGPRVYF-QSPPGAAGEG-PGGADDEG 48
A AA AA A G GPG R + G AGEG PGGA D G
Sbjct: 4 AAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYG 47
Score = 30.4 bits (67), Expect = 0.55
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 15 PAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEEW 74
P P P P PR +PPGA G GPG + V+ D + +E+
Sbjct: 66 PEPEPEEEPPRPR----APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGA----IEDP 117
Query: 75 ILEQL-TRLYDCQE--EEIPELEIDVDELLDMESDDARAARV 113
LE + R+ + +E E++ EL+ +V++ ++M A V
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 36.2 bits (82), Expect = 0.010
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)
Query: 1 MADSGTAGGAALAAPAP---------GPGSGGPGPR-------VYFQSPPGAAG 38
+A+ G A G+A AAP P GPGSG P P F+SPPG +G
Sbjct: 513 LAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.2 bits (82), Expect = 0.010
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)
Query: 1 MADSGTAGGAALAAPAP---------GPGSGGPGPR-------VYFQSPPGAAG 38
+A+ G A G+A AAP P GPGSG P P F+SPPG +G
Sbjct: 513 LAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.2 bits (82), Expect = 0.010
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)
Query: 1 MADSGTAGGAALAAPAP---------GPGSGGPGPR-------VYFQSPPGAAG 38
+A+ G A G+A AAP P GPGSG P P F+SPPG +G
Sbjct: 513 LAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566
>gi|194306647 protein phosphatase 1, regulatory subunit 14D
isoform 2 [Homo sapiens]
Length = 200
Score = 36.2 bits (82), Expect = 0.010
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 51 RRQGKVTVKYDRKELRKRLNLEEWILEQLTRLY 83
RR ++TVKYDR +L++ L +E+W+ Q+ L+
Sbjct: 52 RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF 84
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 35.0 bits (79), Expect = 0.023
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 4 SGTAGGAALAA---------PAPGPGSGGPGPRVYFQSPPGAAGEGP--GGADDEGPVRR 52
+G AGGAA A P P PG+ GP + P + P G + P+
Sbjct: 204 AGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALKDEPQTVPDVPSFGESPPLSPIDM 263
Query: 53 QGKVTVKYDRKELRKRL---NLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMES 105
+ +K +RK LR R+ + LE+++RL EE++ L+ EL S
Sbjct: 264 DTQERIKAERKRLRNRIAASKCRKRKLERISRL----EEKVKTLKSQNTELASTAS 315
Score = 27.7 bits (60), Expect = 3.6
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 9 GAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPV 50
GA AA A +GGP +PPG P A E PV
Sbjct: 154 GAGAAAAAAAAAAGGPSGTATGSAPPGEL--APAAAAPEAPV 193
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.0 bits (79), Expect = 0.023
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 5 GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGE--GPGGADDEGPVRRQG 54
G G A A P PG GP Q PPG AGE PG +GP R G
Sbjct: 1090 GERGPAGAAGPIGIPGRPGP------QGPPGPAGEKGAPGEKGPQGPAGRDG 1135
Score = 34.3 bits (77), Expect = 0.038
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 3 DSGTAGGAALAAPAPGPG----SGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQG 54
+SG +G A P PG G PGP V F PG GE PG A +GP +G
Sbjct: 1313 ESGPSGAAGPPGPKGPPGDDGPKGSPGP-VGFPGDPGPPGE-PGPAGQDGPPGDKG 1366
Score = 27.7 bits (60), Expect = 3.6
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 3 DSGTAGGAALAAPAPGPG-SGGPGPRVYFQSPPGAAG-EG-------PGGADDEGPVRRQ 53
D G G P PG SG PG R PPG AG EG G A EGP +
Sbjct: 1367 DDGEPGQTGSPGPTGEPGPSGPPGKR----GPPGPAGPEGRQGEKGAKGEAGLEGPPGKT 1422
Query: 54 GKV 56
G +
Sbjct: 1423 GPI 1425
Score = 26.6 bits (57), Expect = 8.0
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 4 SGTAGGAALAAPAPGPGSGG----------PGPRVYFQSPPGAAGE--GPGGADDEGPVR 51
+G G P PGSGG GPR Q PPG AG+ G A +G
Sbjct: 561 AGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGV-QGPPGPAGKPGRRGRAGSDGARG 619
Query: 52 RQGKVTVKYDR 62
G+ K DR
Sbjct: 620 MPGQTGPKGDR 630
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 35.0 bits (79), Expect = 0.023
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 3 DSGTAGGAA--------LAAPAPGPGSGGPGPRVYFQSPPGA-----AGEGPGGAD 45
DSG GGAA LAA P S GP P + F+ PGA GPG AD
Sbjct: 646 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 701
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.0 bits (79), Expect = 0.023
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 3 DSGTAGGAA--------LAAPAPGPGSGGPGPRVYFQSPPGA-----AGEGPGGAD 45
DSG GGAA LAA P S GP P + F+ PGA GPG AD
Sbjct: 915 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 970
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.023
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 3 DSGTAGGAA--------LAAPAPGPGSGGPGPRVYFQSPPGA-----AGEGPGGAD 45
DSG GGAA LAA P S GP P + F+ PGA GPG AD
Sbjct: 607 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 662
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 35.0 bits (79), Expect = 0.023
Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 5 GTAGGAALA-----APAPGP----------GSGGP-GP--RVYFQSPPGAAGEG--PGGA 44
GTAGG L + PGP GSGGP GP R Q PPGAAGE PG
Sbjct: 908 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 967
Query: 45 DDEGPVRRQG 54
GP R G
Sbjct: 968 GPIGPTGRDG 977
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 17 PG-PGSGGPGPRVYFQSPPGAAG-EGPGGADDEGPVRRQGKVTVK 59
PG PGS GP + PPG G +GP G +GP+ G VK
Sbjct: 595 PGMPGSDGPPGHPGKEGPPGTKGNQGPSG--PQGPLGYPGPRGVK 637
Score = 26.9 bits (58), Expect = 6.1
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 3 DSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
++G G PA PGS G + PGA G PG GP GK
Sbjct: 1224 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG-APGKTGPVGPAGPAGK 1275
Score = 26.6 bits (57), Expect = 8.0
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 3 DSGTAGGAALAAPAPGP-GSGGPGPRVYFQSPPGAAGE-GPGGADDE----GPVRRQGKV 56
++G G P PGP G GP Q PPG G GP G E G QG+
Sbjct: 1083 ETGDVGPMGPPGP-PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1141
Query: 57 TVKYDRKE 64
VK R E
Sbjct: 1142 GVKGPRGE 1149
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 35.0 bits (79), Expect = 0.023
Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 5 GTAGGAALA-----APAPGP----------GSGGP-GP--RVYFQSPPGAAGEG--PGGA 44
GTAGG L + PGP GSGGP GP R Q PPGAAGE PG
Sbjct: 887 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 946
Query: 45 DDEGPVRRQG 54
GP R G
Sbjct: 947 GPIGPTGRDG 956
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 17 PG-PGSGGPGPRVYFQSPPGAAG-EGPGGADDEGPVRRQGKVTVK 59
PG PGS GP + PPG G +GP G +GP+ G VK
Sbjct: 574 PGMPGSDGPPGHPGKEGPPGTKGNQGPSG--PQGPLGYPGPRGVK 616
Score = 26.9 bits (58), Expect = 6.1
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 3 DSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
++G G PA PGS G + PGA G PG GP GK
Sbjct: 1203 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG-APGKTGPVGPAGPAGK 1254
Score = 26.6 bits (57), Expect = 8.0
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 3 DSGTAGGAALAAPAPGP-GSGGPGPRVYFQSPPGAAGE-GPGGADDE----GPVRRQGKV 56
++G G P PGP G GP Q PPG G GP G E G QG+
Sbjct: 1062 ETGDVGPMGPPGP-PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1120
Query: 57 TVKYDRKE 64
VK R E
Sbjct: 1121 GVKGPRGE 1128
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 35.0 bits (79), Expect = 0.023
Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 5 GTAGGAALA-----APAPGP----------GSGGP-GP--RVYFQSPPGAAGEG--PGGA 44
GTAGG L + PGP GSGGP GP R Q PPGAAGE PG
Sbjct: 994 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 1053
Query: 45 DDEGPVRRQG 54
GP R G
Sbjct: 1054 GPIGPTGRDG 1063
Score = 27.7 bits (60), Expect = 3.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 17 PG-PGSGGPGPRVYFQSPPGAAG-EGPGGADDEGPVRRQGKVTVK 59
PG PGS GP + PPG G +GP G +GP+ G VK
Sbjct: 681 PGMPGSDGPPGHPGKEGPPGTKGNQGPSG--PQGPLGYPGPRGVK 723
Score = 26.9 bits (58), Expect = 6.1
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 3 DSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
++G G PA PGS G + PGA G PG GP GK
Sbjct: 1310 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG-APGKTGPVGPAGPAGK 1361
Score = 26.6 bits (57), Expect = 8.0
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 3 DSGTAGGAALAAPAPGP-GSGGPGPRVYFQSPPGAAGE-GPGGADDE----GPVRRQGKV 56
++G G P PGP G GP Q PPG G GP G E G QG+
Sbjct: 1169 ETGDVGPMGPPGP-PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1227
Query: 57 TVKYDRKE 64
VK R E
Sbjct: 1228 GVKGPRGE 1235
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 34.7 bits (78), Expect = 0.029
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 4 SGTAGGAALAAPAPGPGSGGPGPRVYFQSP-PGAAGEGPGGADDEGPVR 51
SG A G +AA A GPG G G +P P G G GA G R
Sbjct: 43 SGAASGTVVAAAAGGPGPGAGGVAAAGPAPAPPTGGSGGSGAGGSGSAR 91
Score = 31.6 bits (70), Expect = 0.25
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 2 ADSGTAGGAALAAPAPGPG---SGGPGPRVYFQSPP--GAAGEGPGGA 44
A SGT AA P PG G + GP P +PP G+ G G GG+
Sbjct: 45 AASGTVVAAAAGGPGPGAGGVAAAGPAP-----APPTGGSGGSGAGGS 87
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 34.3 bits (77), Expect = 0.038
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 2/111 (1%)
Query: 5 GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKE 64
G GA A A G G ++ GA G GPG G G T R
Sbjct: 1900 GAEAGAGAEAGAGAEAGAGAGAEAGAEAGAGA-GAGPGTESGAGVWSWDGDATTVESRLG 1958
Query: 65 LRKRLNLEEWILEQLTRLYDCQEEEIPEL-EIDVDELLDMESDDARAARVK 114
+ +E W L + + E P++ EI + L ES+++ R K
Sbjct: 1959 AGEEAGVESWTLARNVGEDELSRESSPDIEEISLRSLFWAESENSNTFRSK 2009
>gi|122937219 F-box protein 41 [Homo sapiens]
Length = 936
Score = 34.3 bits (77), Expect = 0.038
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 6 TAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGAD---DEGPVRRQGKVTVK--Y 60
+ +A + P PGP GPGP P A+ P AD +EG R + + K
Sbjct: 223 SVASSACSTPPPGP---GPGP---CPGPASASPASPSPADVAYEEGLARLKIRALEKLEV 276
Query: 61 DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELL 117
DR+ R +E+ I Q+ RL ELE EL + AR R KE L
Sbjct: 277 DRRLERLSEEVEQKIAGQVGRLQ-------AELERKAAELETARQESARLGREKEEL 326
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 33.9 bits (76), Expect = 0.050
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 10/39 (25%)
Query: 14 APAPGPGSGGPG--------PRVY--FQSPPGAAGEGPG 42
+P PG G GPG PR + FQ PPG G GPG
Sbjct: 12 SPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPG 50
Score = 27.3 bits (59), Expect = 4.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 30 FQSPPGAAGEGPGGAD 45
F PPG G+GPGG +
Sbjct: 11 FSPPPGGGGDGPGGPE 26
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 33.9 bits (76), Expect = 0.050
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 1 MADSGTAGGAALAAPAPG-PGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVK 59
+A+ G AGGA A APG PG P +PP A+ GP PV +V++
Sbjct: 40 LAEGGPAGGALYAPIAPGAPGPAPPASPAAPAAPPVASDLGP-----RPPVSLDPRVSIY 94
Query: 60 YDRKELRKRLNLEEWILEQLTR 81
R+ + R +++ + L R
Sbjct: 95 STRRPVLARTHVQGRVYNFLER 116
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
Length = 1747
Score = 33.9 bits (76), Expect = 0.050
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 2 ADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPP 34
A S + + L +PA GPG G PGPR FQ P
Sbjct: 1648 ARSRSPSPSPLPSPASGPGPGAPGPRRPFQQKP 1680
Score = 28.9 bits (63), Expect = 1.6
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 10 AALAAPAPGPGSGG----PGPRVYFQSPPG---AAGEGPG 42
AALA +PGPG G P P P G AG+GPG
Sbjct: 983 AALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPG 1022
Score = 28.5 bits (62), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 4 SGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGA 36
+G AG + ++ P PGPG G P PPGA
Sbjct: 426 AGRAGQSKISDPGPGPGGVGGAP----LPPPGA 454
>gi|130977756 transmembrane anterior posterior transformation 1
[Homo sapiens]
Length = 567
Score = 33.9 bits (76), Expect = 0.050
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 7 AGGAALAAPAPGPGSGGPGP----RVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDR 62
AG AAP G G G GP R + P G+ G+GP A + + +R
Sbjct: 2 AGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRER 61
Query: 63 KELRKRLNLEEWILEQLTRLYDCQEEE 89
+ R L+L ++ +LTR Y + E
Sbjct: 62 RRGRTELSLLRFLSAELTRGYFLEHNE 88
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 33.9 bits (76), Expect = 0.050
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 5 GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADD-------EGPVRRQGKVT 57
GT G L P PG GP Q PPG EGP GA +G R+GK
Sbjct: 780 GTPGNEGLDGPRGDPGQPGPPGE---QGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTG 836
Query: 58 VKYD 61
K D
Sbjct: 837 PKGD 840
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 5 GTAGGAALAAPAPGPGS-GGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVK 59
G G L P PG G PGP +F P GP G E + +G+ VK
Sbjct: 177 GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVK 232
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 33.9 bits (76), Expect = 0.050
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 5 GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADD-------EGPVRRQGKVT 57
GT G L P PG GP Q PPG EGP GA +G R+GK
Sbjct: 780 GTPGNEGLDGPRGDPGQPGPPGE---QGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTG 836
Query: 58 VKYD 61
K D
Sbjct: 837 PKGD 840
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 5 GTAGGAALAAPAPGPGS-GGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVK 59
G G L P PG G PGP +F P GP G E + +G+ VK
Sbjct: 177 GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVK 232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,780,042
Number of Sequences: 37866
Number of extensions: 486467
Number of successful extensions: 4451
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 301
Number of HSP's that attempted gapping in prelim test: 3419
Number of HSP's gapped (non-prelim): 1245
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.