Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239755567

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755567 PREDICTED: similar to protein phosphatase 1
regulatory subunit 14B [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755567 PREDICTED: similar to protein phosphatase 1 regulat...   299   5e-82
gi|20162550 protein phosphatase 1 regulatory subunit 14B [Homo s...   299   5e-82
gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens]              216   4e-57
gi|19311006 protein phosphatase 1, regulatory (inhibitor) subuni...   166   6e-42
gi|15147250 protein phosphatase 1, regulatory (inhibitor) subuni...    95   2e-20
gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform...    76   1e-14
gi|95147333 phospholipase C, beta 2 [Homo sapiens]                     40   0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    38   0.003
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]           37   0.008
gi|239757043 PREDICTED: functional smad suppressing element 18 [...    36   0.010
gi|239751555 PREDICTED: functional smad suppressing element 18 [...    36   0.010
gi|239746067 PREDICTED: functional smad suppressing element 18 [...    36   0.010
gi|194306647 protein phosphatase 1, regulatory subunit 14D isofo...    36   0.010
gi|102469037 jun D proto-oncogene [Homo sapiens]                       35   0.023
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       35   0.023
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    35   0.023
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    35   0.023
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    35   0.023
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    35   0.023
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    35   0.023
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    35   0.023
gi|4505531 oxysterol binding protein [Homo sapiens]                    35   0.029
gi|239757861 PREDICTED: similar to armadillo repeat containing, ...    34   0.038
gi|122937219 F-box protein 41 [Homo sapiens]                           34   0.038
gi|42560248 POU domain, class 5, transcription factor 1 isoform ...    34   0.050
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,...    34   0.050
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    34   0.050
gi|130977756 transmembrane anterior posterior transformation 1 [...    34   0.050
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    34   0.050
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    34   0.050

>gi|239755567 PREDICTED: similar to protein phosphatase 1 regulatory
           subunit 14B [Homo sapiens]
          Length = 147

 Score =  299 bits (766), Expect = 5e-82
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60
           MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY
Sbjct: 1   MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60

Query: 61  DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120
           DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC
Sbjct: 61  DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120

Query: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147
           YKPTEAFISGLLDKIRGMQKLSTPQKK
Sbjct: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147


>gi|20162550 protein phosphatase 1 regulatory subunit 14B [Homo
           sapiens]
          Length = 147

 Score =  299 bits (766), Expect = 5e-82
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60
           MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY
Sbjct: 1   MADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKY 60

Query: 61  DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120
           DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC
Sbjct: 61  DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELLVDC 120

Query: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147
           YKPTEAFISGLLDKIRGMQKLSTPQKK
Sbjct: 121 YKPTEAFISGLLDKIRGMQKLSTPQKK 147


>gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens]
          Length = 686

 Score =  216 bits (551), Expect = 4e-57
 Identities = 107/117 (91%), Positives = 111/117 (94%)

Query: 31  QSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEEWILEQLTRLYDCQEEEI 90
           ++PPGAAGEGPG ADDEGPVRRQGKVT+KYD KELRK LNLEEWILEQLTRLYDCQEEEI
Sbjct: 570 RAPPGAAGEGPGCADDEGPVRRQGKVTIKYDPKELRKHLNLEEWILEQLTRLYDCQEEEI 629

Query: 91  PELEIDVDELLDMESDDARAARVKELLVDCYKPTEAFISGLLDKIRGMQKLSTPQKK 147
            ELEIDVDELLDMESDDA A+RVKELLVDCYKPTEAFISGLLDKIR MQKLSTPQKK
Sbjct: 630 SELEIDVDELLDMESDDAWASRVKELLVDCYKPTEAFISGLLDKIRAMQKLSTPQKK 686


>gi|19311006 protein phosphatase 1, regulatory (inhibitor) subunit
           14C [Homo sapiens]
          Length = 165

 Score =  166 bits (420), Expect = 6e-42
 Identities = 86/151 (56%), Positives = 106/151 (70%), Gaps = 23/151 (15%)

Query: 20  GSGGPGPRVYFQSPPGAAGEGPGGA-------DDEGPV----------------RRQGKV 56
           G+ G G RV+FQSP G AG  PG +       +D  PV                 +QGKV
Sbjct: 13  GASGGGARVFFQSPRGGAGGSPGSSSGSGSSREDSAPVATAAAAGQVQQQQQRRHQQGKV 72

Query: 57  TVKYDRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKEL 116
           TVKYDRKELRKRL LEEWI+EQL +LY C+EEE+PE+EID+D+LLD +SD+ RA++++E 
Sbjct: 73  TVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPEVEIDIDDLLDADSDEERASKLQEA 132

Query: 117 LVDCYKPTEAFISGLLDKIRGMQKLSTPQKK 147
           LVDCYKPTE FI  LL +IRGM+KLS PQKK
Sbjct: 133 LVDCYKPTEEFIKELLSRIRGMRKLSPPQKK 163


>gi|15147250 protein phosphatase 1, regulatory (inhibitor) subunit
           14A [Homo sapiens]
          Length = 147

 Score = 94.7 bits (234), Expect = 2e-20
 Identities = 49/116 (42%), Positives = 78/116 (67%), Gaps = 2/116 (1%)

Query: 25  GPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEEWILEQLTRLYD 84
           G RV  +    +   GPGG+   G  +R  +VTVKYDR+EL++RL++E+WI  +L  LY 
Sbjct: 7   GKRVLSKLQSPSRARGPGGSPG-GLQKRHARVTVKYDRRELQRRLDVEKWIDGRLEELYR 65

Query: 85  CQEEEIPELEIDVDELLDMESDDARAARVKELLVDCYKPTEAFISGLLDKIRGMQK 140
             E ++P+ EI++DELL++ES++ R+ +++ LL  C KP E FI  LL K++G+ +
Sbjct: 66  GMEADMPD-EINIDELLELESEEERSRKIQGLLKSCGKPVEDFIQELLAKLQGLHR 120


>gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform 1
           [Homo sapiens]
          Length = 145

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 38/97 (39%), Positives = 70/97 (72%), Gaps = 4/97 (4%)

Query: 51  RRQGKVTVKYDRKELRKRLNLEEWILEQLTRLYDCQEEEIP-ELEIDVDELLDMESDDAR 109
           RR  ++TVKYDR +L++ L +E+W+  Q+  L+  Q++  P E EID++ L+D+ +++ +
Sbjct: 52  RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF--QDQATPSEPEIDLEALMDLSTEEQK 109

Query: 110 AARVKELLVDCYKPTEAFISGLLDKIRGMQKLSTPQK 146
             +++ +L +C +PTEAFIS LL +++ +++LS PQK
Sbjct: 110 T-QLEAILGNCPRPTEAFISELLSQLKKLRRLSRPQK 145


>gi|95147333 phospholipase C, beta 2 [Homo sapiens]
          Length = 1185

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 30/153 (19%)

Query: 1    MADSGTAGGAALAAPAPGPGSGGPGPRVY--FQSPPGAAGEGPGGADDEGPVRRQGKVTV 58
            +A+ G  G   + A   GPG G    R     +S   A GEGP G D        G+V  
Sbjct: 931  LAELGPPGVGGVGACKLGPGKGSRKKRSLPREESAGAAPGEGPEGVD--------GRV-- 980

Query: 59   KYDRKELRKRLNLEEWILEQLTRLYDC----QEEEIPELEIDVDELLDMESDDARAARVK 114
                +EL+ RL LE  +L Q    Y+C    +E+ + E    + +++++ + + +AA +K
Sbjct: 981  ----RELKDRLELE--LLRQGEEQYECVLKRKEQHVAE---QISKMMEL-AREKQAAELK 1030

Query: 115  ELLVDCYKPTEAFISGL----LDKIRGMQKLST 143
             L       T+     L    L++I+GM K++T
Sbjct: 1031 ALKETSENDTKEMKKKLETKRLERIQGMTKVTT 1063


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 8   GGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPG-GADDEGPVR 51
           GG+A AAPAP P +GGP   V  Q  PGAA   P  G   E P R
Sbjct: 306 GGSAGAAPAPAPAAGGPA-GVSGQPGPGAAAAAPAPGVKAESPKR 349



 Score = 34.7 bits (78), Expect = 0.029
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 4   SGTAGGAALAAPAPGPGSG-GPGPRVYFQSPPGAAGEGPGGA 44
           +G A  AA A P PGPG G GPGP     + PGAA    G A
Sbjct: 161 AGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA 202



 Score = 30.4 bits (67), Expect = 0.55
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 4   SGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGP 49
           SG+  GAA A PA  P  G PG       PP A    PGG   + P
Sbjct: 64  SGSPAGAAGAGPA-APAEGAPGAA---PEPPPAGRARPGGGGPQRP 105



 Score = 29.3 bits (64), Expect = 1.2
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 7   AGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGP 49
           A GA  AAPA G     P P      P G A  G GG    GP
Sbjct: 70  AAGAGPAAPAEGAPGAAPEP-----PPAGRARPGGGGPQRPGP 107



 Score = 27.7 bits (60), Expect = 3.6
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 7   AGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGP 49
           AG A  A PA      GPGP      P    G GPG     GP
Sbjct: 155 AGPAKPAGPAALAARAGPGP-----GPGPGPGPGPGPGKPAGP 192



 Score = 26.9 bits (58), Expect = 6.1
 Identities = 16/46 (34%), Positives = 17/46 (36%)

Query: 10  AALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
           AA  A  P P   GP       +    AG GPG     GP    GK
Sbjct: 143 AAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188



 Score = 26.6 bits (57), Expect = 8.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 2   ADSGTAGGAALAAPAPGPGS--GGPGPRVYFQSPPGAAGEGPGGA 44
           A +  AGG A  +  PGPG+    P P V  +SP       P  A
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA 358


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 14  APAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEE 73
           AP PGPGSG PG +   +  PG     PG    E P     K  V+   +E  K   L+ 
Sbjct: 83  APGPGPGSGAPGSQEE-EEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQN 141

Query: 74  WILEQL 79
            + +Q+
Sbjct: 142 EVEKQM 147



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 7  AGGAALAAPAPGPGSGGPGPRVYF-QSPPGAAGEG-PGGADDEG 48
          A  AA AA A G    GPG R +      G AGEG PGGA D G
Sbjct: 4  AAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYG 47



 Score = 30.4 bits (67), Expect = 0.55
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 15  PAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKELRKRLNLEEW 74
           P P P    P PR    +PPGA G GPG          +    V+ D  +      +E+ 
Sbjct: 66  PEPEPEEEPPRPR----APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGA----IEDP 117

Query: 75  ILEQL-TRLYDCQE--EEIPELEIDVDELLDMESDDARAARV 113
            LE +  R+ + +E  E++ EL+ +V++ ++M      A  V
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV 159


>gi|239757043 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 996

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)

Query: 1   MADSGTAGGAALAAPAP---------GPGSGGPGPR-------VYFQSPPGAAG 38
           +A+ G A G+A AAP P         GPGSG P P          F+SPPG +G
Sbjct: 513 LAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566


>gi|239751555 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)

Query: 1   MADSGTAGGAALAAPAP---------GPGSGGPGPR-------VYFQSPPGAAG 38
           +A+ G A G+A AAP P         GPGSG P P          F+SPPG +G
Sbjct: 513 LAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566


>gi|239746067 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)

Query: 1   MADSGTAGGAALAAPAP---------GPGSGGPGPR-------VYFQSPPGAAG 38
           +A+ G A G+A AAP P         GPGSG P P          F+SPPG +G
Sbjct: 513 LAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSG 566


>gi|194306647 protein phosphatase 1, regulatory subunit 14D
          isoform 2 [Homo sapiens]
          Length = 200

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 51 RRQGKVTVKYDRKELRKRLNLEEWILEQLTRLY 83
          RR  ++TVKYDR +L++ L +E+W+  Q+  L+
Sbjct: 52 RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF 84


>gi|102469037 jun D proto-oncogene [Homo sapiens]
          Length = 347

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 4   SGTAGGAALAA---------PAPGPGSGGPGPRVYFQSPPGAAGEGP--GGADDEGPVRR 52
           +G AGGAA  A         P P PG+ GP      +  P    + P  G +    P+  
Sbjct: 204 AGGAGGAATVAFAAEPVPFPPPPPPGALGPPRLAALKDEPQTVPDVPSFGESPPLSPIDM 263

Query: 53  QGKVTVKYDRKELRKRL---NLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMES 105
             +  +K +RK LR R+      +  LE+++RL    EE++  L+    EL    S
Sbjct: 264 DTQERIKAERKRLRNRIAASKCRKRKLERISRL----EEKVKTLKSQNTELASTAS 315



 Score = 27.7 bits (60), Expect = 3.6
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 9   GAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPV 50
           GA  AA A    +GGP       +PPG     P  A  E PV
Sbjct: 154 GAGAAAAAAAAAAGGPSGTATGSAPPGEL--APAAAAPEAPV 193


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 5    GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGE--GPGGADDEGPVRRQG 54
            G  G A  A P   PG  GP      Q PPG AGE   PG    +GP  R G
Sbjct: 1090 GERGPAGAAGPIGIPGRPGP------QGPPGPAGEKGAPGEKGPQGPAGRDG 1135



 Score = 34.3 bits (77), Expect = 0.038
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 3    DSGTAGGAALAAPAPGPG----SGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQG 54
            +SG +G A    P   PG     G PGP V F   PG  GE PG A  +GP   +G
Sbjct: 1313 ESGPSGAAGPPGPKGPPGDDGPKGSPGP-VGFPGDPGPPGE-PGPAGQDGPPGDKG 1366



 Score = 27.7 bits (60), Expect = 3.6
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 3    DSGTAGGAALAAPAPGPG-SGGPGPRVYFQSPPGAAG-EG-------PGGADDEGPVRRQ 53
            D G  G      P   PG SG PG R     PPG AG EG        G A  EGP  + 
Sbjct: 1367 DDGEPGQTGSPGPTGEPGPSGPPGKR----GPPGPAGPEGRQGEKGAKGEAGLEGPPGKT 1422

Query: 54   GKV 56
            G +
Sbjct: 1423 GPI 1425



 Score = 26.6 bits (57), Expect = 8.0
 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 4   SGTAGGAALAAPAPGPGSGG----------PGPRVYFQSPPGAAGE--GPGGADDEGPVR 51
           +G  G      P   PGSGG           GPR   Q PPG AG+    G A  +G   
Sbjct: 561 AGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGV-QGPPGPAGKPGRRGRAGSDGARG 619

Query: 52  RQGKVTVKYDR 62
             G+   K DR
Sbjct: 620 MPGQTGPKGDR 630


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 3   DSGTAGGAA--------LAAPAPGPGSGGPGPRVYFQSPPGA-----AGEGPGGAD 45
           DSG  GGAA        LAA  P   S GP P + F+  PGA        GPG AD
Sbjct: 646 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 701


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 3   DSGTAGGAA--------LAAPAPGPGSGGPGPRVYFQSPPGA-----AGEGPGGAD 45
           DSG  GGAA        LAA  P   S GP P + F+  PGA        GPG AD
Sbjct: 915 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 970


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 3   DSGTAGGAA--------LAAPAPGPGSGGPGPRVYFQSPPGA-----AGEGPGGAD 45
           DSG  GGAA        LAA  P   S GP P + F+  PGA        GPG AD
Sbjct: 607 DSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSAD 662


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 20/70 (28%)

Query: 5   GTAGGAALA-----APAPGP----------GSGGP-GP--RVYFQSPPGAAGEG--PGGA 44
           GTAGG  L      +  PGP          GSGGP GP  R   Q PPGAAGE   PG  
Sbjct: 908 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 967

Query: 45  DDEGPVRRQG 54
              GP  R G
Sbjct: 968 GPIGPTGRDG 977



 Score = 27.7 bits (60), Expect = 3.6
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 17  PG-PGSGGPGPRVYFQSPPGAAG-EGPGGADDEGPVRRQGKVTVK 59
           PG PGS GP      + PPG  G +GP G   +GP+   G   VK
Sbjct: 595 PGMPGSDGPPGHPGKEGPPGTKGNQGPSG--PQGPLGYPGPRGVK 637



 Score = 26.9 bits (58), Expect = 6.1
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3    DSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
            ++G  G      PA  PGS G       +  PGA G  PG     GP    GK
Sbjct: 1224 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG-APGKTGPVGPAGPAGK 1275



 Score = 26.6 bits (57), Expect = 8.0
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 3    DSGTAGGAALAAPAPGP-GSGGPGPRVYFQSPPGAAGE-GPGGADDE----GPVRRQGKV 56
            ++G  G      P PGP G  GP      Q PPG  G  GP G   E    G    QG+ 
Sbjct: 1083 ETGDVGPMGPPGP-PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1141

Query: 57   TVKYDRKE 64
             VK  R E
Sbjct: 1142 GVKGPRGE 1149


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 20/70 (28%)

Query: 5   GTAGGAALA-----APAPGP----------GSGGP-GP--RVYFQSPPGAAGEG--PGGA 44
           GTAGG  L      +  PGP          GSGGP GP  R   Q PPGAAGE   PG  
Sbjct: 887 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 946

Query: 45  DDEGPVRRQG 54
              GP  R G
Sbjct: 947 GPIGPTGRDG 956



 Score = 27.7 bits (60), Expect = 3.6
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 17  PG-PGSGGPGPRVYFQSPPGAAG-EGPGGADDEGPVRRQGKVTVK 59
           PG PGS GP      + PPG  G +GP G   +GP+   G   VK
Sbjct: 574 PGMPGSDGPPGHPGKEGPPGTKGNQGPSG--PQGPLGYPGPRGVK 616



 Score = 26.9 bits (58), Expect = 6.1
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3    DSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
            ++G  G      PA  PGS G       +  PGA G  PG     GP    GK
Sbjct: 1203 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG-APGKTGPVGPAGPAGK 1254



 Score = 26.6 bits (57), Expect = 8.0
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 3    DSGTAGGAALAAPAPGP-GSGGPGPRVYFQSPPGAAGE-GPGGADDE----GPVRRQGKV 56
            ++G  G      P PGP G  GP      Q PPG  G  GP G   E    G    QG+ 
Sbjct: 1062 ETGDVGPMGPPGP-PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1120

Query: 57   TVKYDRKE 64
             VK  R E
Sbjct: 1121 GVKGPRGE 1128


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 20/70 (28%)

Query: 5    GTAGGAALA-----APAPGP----------GSGGP-GP--RVYFQSPPGAAGEG--PGGA 44
            GTAGG  L      +  PGP          GSGGP GP  R   Q PPGAAGE   PG  
Sbjct: 994  GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEK 1053

Query: 45   DDEGPVRRQG 54
               GP  R G
Sbjct: 1054 GPIGPTGRDG 1063



 Score = 27.7 bits (60), Expect = 3.6
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 17  PG-PGSGGPGPRVYFQSPPGAAG-EGPGGADDEGPVRRQGKVTVK 59
           PG PGS GP      + PPG  G +GP G   +GP+   G   VK
Sbjct: 681 PGMPGSDGPPGHPGKEGPPGTKGNQGPSG--PQGPLGYPGPRGVK 723



 Score = 26.9 bits (58), Expect = 6.1
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3    DSGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGK 55
            ++G  G      PA  PGS G       +  PGA G  PG     GP    GK
Sbjct: 1310 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG-APGKTGPVGPAGPAGK 1361



 Score = 26.6 bits (57), Expect = 8.0
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 3    DSGTAGGAALAAPAPGP-GSGGPGPRVYFQSPPGAAGE-GPGGADDE----GPVRRQGKV 56
            ++G  G      P PGP G  GP      Q PPG  G  GP G   E    G    QG+ 
Sbjct: 1169 ETGDVGPMGPPGP-PGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEP 1227

Query: 57   TVKYDRKE 64
             VK  R E
Sbjct: 1228 GVKGPRGE 1235


>gi|4505531 oxysterol binding protein [Homo sapiens]
          Length = 807

 Score = 34.7 bits (78), Expect = 0.029
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 4  SGTAGGAALAAPAPGPGSGGPGPRVYFQSP-PGAAGEGPGGADDEGPVR 51
          SG A G  +AA A GPG G  G      +P P   G G  GA   G  R
Sbjct: 43 SGAASGTVVAAAAGGPGPGAGGVAAAGPAPAPPTGGSGGSGAGGSGSAR 91



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 10/48 (20%)

Query: 2  ADSGTAGGAALAAPAPGPG---SGGPGPRVYFQSPP--GAAGEGPGGA 44
          A SGT   AA   P PG G   + GP P     +PP  G+ G G GG+
Sbjct: 45 AASGTVVAAAAGGPGPGAGGVAAAGPAP-----APPTGGSGGSGAGGS 87


>gi|239757861 PREDICTED: similar to armadillo repeat containing,
            X-linked 4 [Homo sapiens]
          Length = 2382

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 5    GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDRKE 64
            G   GA   A A      G G     ++  GA G GPG     G     G  T    R  
Sbjct: 1900 GAEAGAGAEAGAGAEAGAGAGAEAGAEAGAGA-GAGPGTESGAGVWSWDGDATTVESRLG 1958

Query: 65   LRKRLNLEEWILEQLTRLYDCQEEEIPEL-EIDVDELLDMESDDARAARVK 114
              +   +E W L +     +   E  P++ EI +  L   ES+++   R K
Sbjct: 1959 AGEEAGVESWTLARNVGEDELSRESSPDIEEISLRSLFWAESENSNTFRSK 2009


>gi|122937219 F-box protein 41 [Homo sapiens]
          Length = 936

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 18/117 (15%)

Query: 6   TAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGAD---DEGPVRRQGKVTVK--Y 60
           +   +A + P PGP   GPGP      P  A+   P  AD   +EG  R + +   K   
Sbjct: 223 SVASSACSTPPPGP---GPGP---CPGPASASPASPSPADVAYEEGLARLKIRALEKLEV 276

Query: 61  DRKELRKRLNLEEWILEQLTRLYDCQEEEIPELEIDVDELLDMESDDARAARVKELL 117
           DR+  R    +E+ I  Q+ RL         ELE    EL     + AR  R KE L
Sbjct: 277 DRRLERLSEEVEQKIAGQVGRLQ-------AELERKAAELETARQESARLGREKEEL 326


>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
          [Homo sapiens]
          Length = 360

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 10/39 (25%)

Query: 14 APAPGPGSGGPG--------PRVY--FQSPPGAAGEGPG 42
          +P PG G  GPG        PR +  FQ PPG  G GPG
Sbjct: 12 SPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPG 50



 Score = 27.3 bits (59), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 30 FQSPPGAAGEGPGGAD 45
          F  PPG  G+GPGG +
Sbjct: 11 FSPPPGGGGDGPGGPE 26


>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
           member 1 isoform 1 [Homo sapiens]
          Length = 676

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 1   MADSGTAGGAALAAPAPG-PGSGGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVK 59
           +A+ G AGGA  A  APG PG   P       +PP A+  GP       PV    +V++ 
Sbjct: 40  LAEGGPAGGALYAPIAPGAPGPAPPASPAAPAAPPVASDLGP-----RPPVSLDPRVSIY 94

Query: 60  YDRKELRKRLNLEEWILEQLTR 81
             R+ +  R +++  +   L R
Sbjct: 95  STRRPVLARTHVQGRVYNFLER 116


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
          Length = 1747

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 2    ADSGTAGGAALAAPAPGPGSGGPGPRVYFQSPP 34
            A S +   + L +PA GPG G PGPR  FQ  P
Sbjct: 1648 ARSRSPSPSPLPSPASGPGPGAPGPRRPFQQKP 1680



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 7/40 (17%)

Query: 10   AALAAPAPGPGSGG----PGPRVYFQSPPG---AAGEGPG 42
            AALA  +PGPG G     P P      P G    AG+GPG
Sbjct: 983  AALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPG 1022



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 4   SGTAGGAALAAPAPGPGSGGPGPRVYFQSPPGA 36
           +G AG + ++ P PGPG  G  P      PPGA
Sbjct: 426 AGRAGQSKISDPGPGPGGVGGAP----LPPPGA 454


>gi|130977756 transmembrane anterior posterior transformation 1
          [Homo sapiens]
          Length = 567

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 7  AGGAALAAPAPGPGSGGPGP----RVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVKYDR 62
          AG    AAP  G G G  GP    R   + P G+ G+GP  A          +   + +R
Sbjct: 2  AGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRER 61

Query: 63 KELRKRLNLEEWILEQLTRLYDCQEEE 89
          +  R  L+L  ++  +LTR Y  +  E
Sbjct: 62 RRGRTELSLLRFLSAELTRGYFLEHNE 88


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 5   GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADD-------EGPVRRQGKVT 57
           GT G   L  P   PG  GP      Q PPG   EGP GA         +G   R+GK  
Sbjct: 780 GTPGNEGLDGPRGDPGQPGPPGE---QGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTG 836

Query: 58  VKYD 61
            K D
Sbjct: 837 PKGD 840



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 5   GTAGGAALAAPAPGPGS-GGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVK 59
           G  G   L  P   PG  G PGP  +F  P      GP G   E  +  +G+  VK
Sbjct: 177 GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVK 232


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 33.9 bits (76), Expect = 0.050
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 5   GTAGGAALAAPAPGPGSGGPGPRVYFQSPPGAAGEGPGGADD-------EGPVRRQGKVT 57
           GT G   L  P   PG  GP      Q PPG   EGP GA         +G   R+GK  
Sbjct: 780 GTPGNEGLDGPRGDPGQPGPPGE---QGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTG 836

Query: 58  VKYD 61
            K D
Sbjct: 837 PKGD 840



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 5   GTAGGAALAAPAPGPGS-GGPGPRVYFQSPPGAAGEGPGGADDEGPVRRQGKVTVK 59
           G  G   L  P   PG  G PGP  +F  P      GP G   E  +  +G+  VK
Sbjct: 177 GAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVK 232


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,780,042
Number of Sequences: 37866
Number of extensions: 486467
Number of successful extensions: 4451
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 301
Number of HSP's that attempted gapping in prelim test: 3419
Number of HSP's gapped (non-prelim): 1245
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press